GBrowse Details

Vigan.02G050600.01

Basic Information:
Name: Vigan.02G050600.01
Multiple alignment
Variant Information
Position: Chr02:3809550..3813765 (+ strand)
Length: 4216
Functional Information:
Description: Similar to Uncharacterized protein. [I1JTP4, Glycine max]
GO: Biological Process: transport (GO:0006810)
Cellular Component: membrane (GO:0016020)
Molecular Function: transporter activity (GO:0005215)
InterPro: Natural resistance-associated macrophage like (IPR001046)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:5.55,6.29,3.82,3.08,19.83,6.28,4.55,3.93
Arabidopsis thaliana homolog: AT1G47240.1, AT2G23150.1, AT4G18790.1, AT5G67330.1
Automatic updates:
Name: NM_001357779 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max divalent metal ion transporter NRAMP3a (GMNRAMP3A), mRNA.
PubMed ID: 28868061 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr02:3809550..3809904 (+ strand)
Length: 355
Type: five_prime_UTR
Position: Chr02:3809905..3810473 (+ strand)
Length: 569
Type: CDS
Position: Chr02:3810972..3811108 (+ strand)
Length: 137
Type: CDS
Position: Chr02:3811268..3811920 (+ strand)
Length: 653
Type: CDS
Position: Chr02:3812806..3813027 (+ strand)
Length: 222
Type: CDS
Position: Chr02:3813028..3813765 (+ strand)
Length: 738
Type: three_prime_UTR

>Vigan.02G050600.01 class=Sequence position=Chr02:3809550..3813765 (+ strand)
CTTGAAGTGT TGTATAAATT GTAGTAATAA CCGCGCACCT GACAAGATAA ACAAACAAGA ATGATGGTGA AATAAATGAT
CGAACGGCCA CAGACGCAGA CGATGCAATA GTTTCTCTAA GGAAATGACG AAAATAAGCC CTGTAATTGT GACGTGTCGC
TAGATGTTAG TTTAAACCGA GCGATTGCAT CTAGAACGGA GTAGAGAGTA ACTAGCTGCA GAACACATTG GCTAGGCCAG
ATGGTAGATA GATCCGTATA AATAGGTGCG TTGAGTTTGC ACACGTAGCA GGTAGCAGGC CACCGCGAAC TGGCTTCCTC
CACCGTCCGC GCACGCCGGA AAGTTTGATC AGAAAATGAG TGCTCCGCCG CGAGAAGAGG GGTCGAAAGA AGAGGAGAAA
GACGAGGAGG CGAACCGGCT TCTAGAGGAA GCAGGAGCGG TATCGTCATC GGAAGAAGAT GTCGCATACG AAGCGGGGGA
GAAGATCCTG GTGGCGGATT TCGATTTTGA CACAGTGGAC GATGCGACGG TTCCTCCTTT CTCATGGAAG AAGCTGTGGC
TCTTCACTGG GCCTGGGTTC TTGATGAGCA TAGCTTTTTT GGATCCGGGG AATCTCGAGG GGGATCTCCA GTCTGGGGCC
ATCGCGGGCT ACTCGCTCCT CTGGCTCTTG ATGTGGGCCA CCATCATGGG CCTCTTGATC CAGCTTCTGT CCGCCAGAGT
CGGGGTCGCC ACGGGCCGCC ACCTCGCTGA GCTCTGTCGG GATGAGTATC CCCATTGGGC CCGCCTTGTG CTCTGGTTCA
TGGCCGAGCT GGCCCTGATT GGCGCCGACA TTCAAGAGGT CATTGGAAGT GCCATCGCCA TCCAAATTCT TAGCCGAGGC
GTCCTCCCTC TCTGGGTTGG AGTTCTAATC ACTGCTTCCG ACTGGTATCC TTCCTCGCTG TTGCTAACTC CTGTTATTTA
ACTCATGTTA CCATTGGATT TTTATATACC GGAAATGCAT TTACCTCAAC TTTTGGAGAG AGCCTTGCAT GCAAAACTAA
TTTTAGTTGT TGGAAAAAGT TTGATTAATT TTACCCTTTT ATCTCGTTTT TCTATCCACA CTACTTTATC CAAATTCTCG
TTCTTTGAAT TCCACCAGTC ATGTTTTGAG GTGGTTTTTA TGTTCTTTGG TTTTGGTTTC ATGTTTTTCA ATTCTATTTT
TCTTTTTCAA ATTAGTTTCT CTACAACTTT ATTTTTAATT TATGCATTCA CAAGCTCATT TTAGTTCATG GAGGATTTTA
TTTTATTTTC TTATTACTTT TCTTACAAAT TATATGTACC CTTGTTTGTA GTATATTGTT CCCTTTCATT AATTGCTTGC
AAGCTTTCCA TTTTCTCGTC TGAACGTGTT TTAACTGTGG TATATTCTCT GTTGTTGAAC AGCTTTTTCT TTCTATTTCT
TGAGAACTAT GGTGTGAGGA AGTTGGAAGC TGCTTTTGCA GTTCTCATTT CTATTATGGG TCTTTCTTTT GCCTGGATGT
TTGCTGATGC AAGACCTAAT AGACAAGAGC TTTTAATGGG TAAATTTCAT CTGATGTTGT GGTTGAAATA TCACTTTTTT
ATATGACCCA TGTGTTCTTT ATTAGCTTGC CCTTCTCACT GGTGTTTCAC AAATTAAAAG ATATCTAGCC TTTCATAGTC
CATGGATATA ATATAACTGT GTTTGTTCCT TTTGATAGGT ATTTTGGTTC CGAGACTAAG CTCAAAAACA ATTCGTCAAG
CTGTGGGTGT TGTGGGTTGT GTCATTATGC CTCACAATGT ATTCCTGCAT TCTGCTTTGG TTCAATCAAG GAAGGTTGAT
CCTAATAAGA AAGGTCGGGT ACAGGAGGCT CTCAACTACT ATTCAATCGA GTCATCAGCT GCACTTTCAG TCTCCTTCTT
GATCAATCTA TTTGTCACAA CAGTTTTTGC TAAGGGTTTT TATGGAACAA AGCAGGCAAA AGACATAGGA CTCGTCAATG
CAGGGCAATA TCTTGAAGAA AAGTATGGAG GAGGAGTTTT CCCTATTCTT TATATATGGG GAATTGGGTT ATTGGCAGCT
GGCCAGAGTA GCACCATCAC TGGCACATAC GCTGGGCAGT TCATAATGGG GGGTTTCCTC AACCTTCGTT TAAAGAAATG
GATGAGAGCA TTGATCACTC GAAGTTTTGC AATTGTGCCA ACTATAATTG TAGCTATAGT TTTTAATACA TCAGAAGCCT
CCTTGGACAT TTTGAATGAA TGGCTCAATG TGCTTCAGTC CATGCAAATT CCCTTTGCTT TGATTCCCCT CCTCACATTG
GTCTCCAAAG AGCAGCTCAT GGGAACCTTT AGAGTTGGAC CTGTTCTTGA GGTTAGTTAA TCATCTAACT GTTCTTTCAT
TTTGTTGATT GTTAATTATA AGATCTACCT AAAGCAACTT CCCACATGGT TCAAAATTAT GTTTCAGTAA GAGAACAAAG
GTAAAGCTGT CCAATGTTTT TGCTTTGTGT CTGCAATACC TTTTTCTGTA GTTAAGGATG GTTGTCCGTC AGGCTTGACA
GTCAGTGCCC AATCTGATTA TCAAATCTGA AGTTATTTAA GATGTGTGTT GGTAATACAA TAACAATCTA TACCTGTTTG
CTGGATAAAA CAAGAAATAG ATCTGCCAGT TATACTTAAG AGAGTGCAAC GTGGTTGATG CCTGATGTTT TTCTATAGTT
GCTTCTATCC CCTTTCTTTT CTTGTTTTTC TGCTTAGATG CATTTGGTTT GAATGATTTT TATATGAAGG TGAATTTAAA
AAAAAAAATG TTTTAATTCT CCAGTTGAAT TTCTGCAACA GAAATGATCA ACAAACATGA ATTTAAGTTA CTTCGAGATC
TGTTTCTGTG CAGTGTAATG TGAAGATGTT TTAATTTCAG TTCATTTTTC TATAGGAAAA AAATAGAAAA ATTATACAGT
TCCTTGCTTG AGTTCATGGA GTCCTAAAGT TTTAAGGAAT TCTCTCATAA CTGTAAGGAA AAGTATTGCT ACTCATTGAC
TTCCATTTAC ATAAGTATCA TATAATGTAC ATTAAAATTC TTGCCAAGGA TTTGTTCCTA TACAAGATTC ACGTGCTTGT
GGGAATTGGG TTGATGTAGA AGTAATTTAA GGAAAAACGA TGATCAAATA CCATATTCAT TAAGTATACT GATTTCAATA
TTACAAAATC TTCTCTCTTT TTTCCATACT AAAGTTAACT TATTTTGTAC TTGTAGAGAG TAGCATGGAC TGTTGCTGGA
CTGATAATAG TGATTAATGG GTATCTCTTG TTAGATTTCT TCATTTCTGA AGTGAATGGC GTCTTGCTTG GTCTTTTAGC
CTGCTCCTGC ACGACAGCCT ATATTGCGTT CATAGTATAT TTGGTTTCAC AGAGCGGTAT TCTTCCTTCT GCATGGGTTA
ATCGTCTTCC CAAGGGATTT TCTTCAACTG GGAATTAACT CAACAAAATT CATCCTTTGA TGAAAAATCT GGAAATAGTA
CGGCAAACTT CTGCTAGACA ATTTTGCATG AGTTTTGCTT CATAAACCAT AGAGTTTATA GAGTTTCTCT AACCATGCAA
CCTGAATTAA ATTGAATACA AGGTCAGGTA GGGGAAACCA CCTAGTTTTA ACTGCACTTC AATTTTGCAA TAGCCTTACA
AAGTTTACCT TCCATGTGCA CCAAGATGGA TATACCTTTC GGATGGAAGA CATGGAGAGA GCATCATTAC AACATGCAGG
ATAGATTATC GATTTACCGC TCGGCATACC TGCCATTCTA TTTCTAACAA GTTGTGAATT GCTGCATTAT TCTTTGATGT
ATACAGTTTG TATTTAACTT GGCACTGGCA CATGTTCCGT TCATGAAGGA ACACGAGATA CATTCTACTT GCTGAGGGCA
GAAAGGTAAT TAAGACAGCA GACATAAGTT GTCCGGAATA CCCAATAGTA AAATCTGGAG TACATTTATT TTATATTATC
TTTATGTTTT CTAGCTAGTT ATGATCTCAC CTTACTTGAA GGTGCTACTC AGTTGCTGAG CAACACACTG GCAATAACAA
ACTGTTAGGG CCTTAATCTG ATTAGGCTGT AGTTATTGGG TTACTTTTTT GTTGAAAAGT AAAAGGTGTC AAACCAATTT
GATGAATTAC TTGTTGAATT ATATGTAAAA AAACTCATTT CTCTTATTTC TATCCA

>Vigan.02G050600.01
CTTGAAGTGT TGTATAAATT GTAGTAATAA CCGCGCACCT GACAAGATAA ACAAACAAGA ATGATGGTGA AATAAATGAT
CGAACGGCCA CAGACGCAGA CGATGCAATA GTTTCTCTAA GGAAATGACG AAAATAAGCC CTGTAATTGT GACGTGTCGC
TAGATGTTAG TTTAAACCGA GCGATTGCAT CTAGAACGGA GTAGAGAGTA ACTAGCTGCA GAACACATTG GCTAGGCCAG
ATGGTAGATA GATCCGTATA AATAGGTGCG TTGAGTTTGC ACACGTAGCA GGTAGCAGGC CACCGCGAAC TGGCTTCCTC
CACCGTCCGC GCACGCCGGA AAGTTTGATC AGAAAATGAG TGCTCCGCCG CGAGAAGAGG GGTCGAAAGA AGAGGAGAAA
GACGAGGAGG CGAACCGGCT TCTAGAGGAA GCAGGAGCGG TATCGTCATC GGAAGAAGAT GTCGCATACG AAGCGGGGGA
GAAGATCCTG GTGGCGGATT TCGATTTTGA CACAGTGGAC GATGCGACGG TTCCTCCTTT CTCATGGAAG AAGCTGTGGC
TCTTCACTGG GCCTGGGTTC TTGATGAGCA TAGCTTTTTT GGATCCGGGG AATCTCGAGG GGGATCTCCA GTCTGGGGCC
ATCGCGGGCT ACTCGCTCCT CTGGCTCTTG ATGTGGGCCA CCATCATGGG CCTCTTGATC CAGCTTCTGT CCGCCAGAGT
CGGGGTCGCC ACGGGCCGCC ACCTCGCTGA GCTCTGTCGG GATGAGTATC CCCATTGGGC CCGCCTTGTG CTCTGGTTCA
TGGCCGAGCT GGCCCTGATT GGCGCCGACA TTCAAGAGGT CATTGGAAGT GCCATCGCCA TCCAAATTCT TAGCCGAGGC
GTCCTCCCTC TCTGGGTTGG AGTTCTAATC ACTGCTTCCG ACTGCTTTTT CTTTCTATTT CTTGAGAACT ATGGTGTGAG
GAAGTTGGAA GCTGCTTTTG CAGTTCTCAT TTCTATTATG GGTCTTTCTT TTGCCTGGAT GTTTGCTGAT GCAAGACCTA
ATAGACAAGA GCTTTTAATG GGTATTTTGG TTCCGAGACT AAGCTCAAAA ACAATTCGTC AAGCTGTGGG TGTTGTGGGT
TGTGTCATTA TGCCTCACAA TGTATTCCTG CATTCTGCTT TGGTTCAATC AAGGAAGGTT GATCCTAATA AGAAAGGTCG
GGTACAGGAG GCTCTCAACT ACTATTCAAT CGAGTCATCA GCTGCACTTT CAGTCTCCTT CTTGATCAAT CTATTTGTCA
CAACAGTTTT TGCTAAGGGT TTTTATGGAA CAAAGCAGGC AAAAGACATA GGACTCGTCA ATGCAGGGCA ATATCTTGAA
GAAAAGTATG GAGGAGGAGT TTTCCCTATT CTTTATATAT GGGGAATTGG GTTATTGGCA GCTGGCCAGA GTAGCACCAT
CACTGGCACA TACGCTGGGC AGTTCATAAT GGGGGGTTTC CTCAACCTTC GTTTAAAGAA ATGGATGAGA GCATTGATCA
CTCGAAGTTT TGCAATTGTG CCAACTATAA TTGTAGCTAT AGTTTTTAAT ACATCAGAAG CCTCCTTGGA CATTTTGAAT
GAATGGCTCA ATGTGCTTCA GTCCATGCAA ATTCCCTTTG CTTTGATTCC CCTCCTCACA TTGGTCTCCA AAGAGCAGCT
CATGGGAACC TTTAGAGTTG GACCTGTTCT TGAGAGAGTA GCATGGACTG TTGCTGGACT GATAATAGTG ATTAATGGGT
ATCTCTTGTT AGATTTCTTC ATTTCTGAAG TGAATGGCGT CTTGCTTGGT CTTTTAGCCT GCTCCTGCAC GACAGCCTAT
ATTGCGTTCA TAGTATATTT GGTTTCACAG AGCGGTATTC TTCCTTCTGC ATGGGTTAAT CGTCTTCCCA AGGGATTTTC
TTCAACTGGG AATTAACTCA ACAAAATTCA TCCTTTGATG AAAAATCTGG AAATAGTACG GCAAACTTCT GCTAGACAAT
TTTGCATGAG TTTTGCTTCA TAAACCATAG AGTTTATAGA GTTTCTCTAA CCATGCAACC TGAATTAAAT TGAATACAAG
GTCAGGTAGG GGAAACCACC TAGTTTTAAC TGCACTTCAA TTTTGCAATA GCCTTACAAA GTTTACCTTC CATGTGCACC
AAGATGGATA TACCTTTCGG ATGGAAGACA TGGAGAGAGC ATCATTACAA CATGCAGGAT AGATTATCGA TTTACCGCTC
GGCATACCTG CCATTCTATT TCTAACAAGT TGTGAATTGC TGCATTATTC TTTGATGTAT ACAGTTTGTA TTTAACTTGG
CACTGGCACA TGTTCCGTTC ATGAAGGAAC ACGAGATACA TTCTACTTGC TGAGGGCAGA AAGGTAATTA AGACAGCAGA
CATAAGTTGT CCGGAATACC CAATAGTAAA ATCTGGAGTA CATTTATTTT ATATTATCTT TATGTTTTCT AGCTAGTTAT
GATCTCACCT TACTTGAAGG TGCTACTCAG TTGCTGAGCA ACACACTGGC AATAACAAAC TGTTAGGGCC TTAATCTGAT
TAGGCTGTAG TTATTGGGTT ACTTTTTTGT TGAAAAGTAA AAGGTGTCAA ACCAATTTGA TGAATTACTT GTTGAATTAT
ATGTAAAAAA ACTCATTTCT CTTATTTCTA TCCA

>Vigan.02G050600.01
ATGAGTGCTC CGCCGCGAGA AGAGGGGTCG AAAGAAGAGG AGAAAGACGA GGAGGCGAAC CGGCTTCTAG AGGAAGCAGG
AGCGGTATCG TCATCGGAAG AAGATGTCGC ATACGAAGCG GGGGAGAAGA TCCTGGTGGC GGATTTCGAT TTTGACACAG
TGGACGATGC GACGGTTCCT CCTTTCTCAT GGAAGAAGCT GTGGCTCTTC ACTGGGCCTG GGTTCTTGAT GAGCATAGCT
TTTTTGGATC CGGGGAATCT CGAGGGGGAT CTCCAGTCTG GGGCCATCGC GGGCTACTCG CTCCTCTGGC TCTTGATGTG
GGCCACCATC ATGGGCCTCT TGATCCAGCT TCTGTCCGCC AGAGTCGGGG TCGCCACGGG CCGCCACCTC GCTGAGCTCT
GTCGGGATGA GTATCCCCAT TGGGCCCGCC TTGTGCTCTG GTTCATGGCC GAGCTGGCCC TGATTGGCGC CGACATTCAA
GAGGTCATTG GAAGTGCCAT CGCCATCCAA ATTCTTAGCC GAGGCGTCCT CCCTCTCTGG GTTGGAGTTC TAATCACTGC
TTCCGACTGC TTTTTCTTTC TATTTCTTGA GAACTATGGT GTGAGGAAGT TGGAAGCTGC TTTTGCAGTT CTCATTTCTA
TTATGGGTCT TTCTTTTGCC TGGATGTTTG CTGATGCAAG ACCTAATAGA CAAGAGCTTT TAATGGGTAT TTTGGTTCCG
AGACTAAGCT CAAAAACAAT TCGTCAAGCT GTGGGTGTTG TGGGTTGTGT CATTATGCCT CACAATGTAT TCCTGCATTC
TGCTTTGGTT CAATCAAGGA AGGTTGATCC TAATAAGAAA GGTCGGGTAC AGGAGGCTCT CAACTACTAT TCAATCGAGT
CATCAGCTGC ACTTTCAGTC TCCTTCTTGA TCAATCTATT TGTCACAACA GTTTTTGCTA AGGGTTTTTA TGGAACAAAG
CAGGCAAAAG ACATAGGACT CGTCAATGCA GGGCAATATC TTGAAGAAAA GTATGGAGGA GGAGTTTTCC CTATTCTTTA
TATATGGGGA ATTGGGTTAT TGGCAGCTGG CCAGAGTAGC ACCATCACTG GCACATACGC TGGGCAGTTC ATAATGGGGG
GTTTCCTCAA CCTTCGTTTA AAGAAATGGA TGAGAGCATT GATCACTCGA AGTTTTGCAA TTGTGCCAAC TATAATTGTA
GCTATAGTTT TTAATACATC AGAAGCCTCC TTGGACATTT TGAATGAATG GCTCAATGTG CTTCAGTCCA TGCAAATTCC
CTTTGCTTTG ATTCCCCTCC TCACATTGGT CTCCAAAGAG CAGCTCATGG GAACCTTTAG AGTTGGACCT GTTCTTGAGA
GAGTAGCATG GACTGTTGCT GGACTGATAA TAGTGATTAA TGGGTATCTC TTGTTAGATT TCTTCATTTC TGAAGTGAAT
GGCGTCTTGC TTGGTCTTTT AGCCTGCTCC TGCACGACAG CCTATATTGC GTTCATAGTA TATTTGGTTT CACAGAGCGG
TATTCTTCCT TCTGCATGGG TTAATCGTCT TCCCAAGGGA TTTTCTTCAA CTGGGAATTA A

>Vigan.02G050600.01
MSAPPREEGS KEEEKDEEAN RLLEEAGAVS SSEEDVAYEA GEKILVADFD FDTVDDATVP PFSWKKLWLF TGPGFLMSIA
FLDPGNLEGD LQSGAIAGYS LLWLLMWATI MGLLIQLLSA RVGVATGRHL AELCRDEYPH WARLVLWFMA ELALIGADIQ
EVIGSAIAIQ ILSRGVLPLW VGVLITASDC FFFLFLENYG VRKLEAAFAV LISIMGLSFA WMFADARPNR QELLMGILVP
RLSSKTIRQA VGVVGCVIMP HNVFLHSALV QSRKVDPNKK GRVQEALNYY SIESSAALSV SFLINLFVTT VFAKGFYGTK
QAKDIGLVNA GQYLEEKYGG GVFPILYIWG IGLLAAGQSS TITGTYAGQF IMGGFLNLRL KKWMRALITR SFAIVPTIIV
AIVFNTSEAS LDILNEWLNV LQSMQIPFAL IPLLTLVSKE QLMGTFRVGP VLERVAWTVA GLIIVINGYL LLDFFISEVN
GVLLGLLACS CTTAYIAFIV YLVSQSGILP SAWVNRLPKG FSSTGN*