VIGGS:Variant information

Chr02:3809550 - 3813765

Position	Ref.	Alt.	Depth	Score	Freq. Of Alt.	Effect	Species
3809803	C	T	40	1550.77	1.00	UTR_5_PRIME(\|102\|\|None\|Vigan.02G050600.01)	Vigna nepalensis
3810294	C	A	36	1333.77	1.00	SYNONYMOUS_CODING(SILENT\|ctC/ctA\|L130\|None\|Vigan.02G050600.01)	Vigna nepalensis
3810668	C	T	50	1968.77	1.00	INTRON(\|\|\|None\|Vigan.02G050600.01)	Vigna nepalensis
3810883	T	C	61	2416.77	1.00	INTRON(\|\|\|None\|Vigan.02G050600.01)	Vigna nepalensis
3812010	G	C	63	2486.77	1.00	INTRON(\|\|\|None\|Vigan.02G050600.01)	Vigna nepalensis
3813503	C	G	45	1735.77	1.00	UPSTREAM(\|3886\|\|None\|Vigan.02G050700.01), UTR_3_PRIME(\|476\|\|None\|Vigan.02G050600.01)	Vigna nepalensis
3813570	A	T	50	1936.77	1.00	UPSTREAM(\|3819\|\|None\|Vigan.02G050700.01), UTR_3_PRIME(\|543\|\|None\|Vigan.02G050600.01)	Vigna nepalensis
3813619	G	A	49	2013.77	1.00	UPSTREAM(\|3770\|\|None\|Vigan.02G050700.01), UTR_3_PRIME(\|592\|\|None\|Vigan.02G050600.01)	Vigna nepalensis
3813742	A	C	61	2617.77	0.98	UPSTREAM(\|3647\|\|None\|Vigan.02G050700.01), UTR_3_PRIME(\|715\|\|None\|Vigan.02G050600.01)	Vigna nepalensis
3813751	T	C	56	2520.77	1.00	UPSTREAM(\|3638\|\|None\|Vigan.02G050700.01), UTR_3_PRIME(\|724\|\|None\|Vigan.02G050600.01)	Vigna nepalensis

Position	Ref.	Alt.	Depth	Score	Freq. Of Alt.	Effect	Species
3809669	AG	A	50	1821.73	1.00	UTR_5_PRIME(\|235\|\|None\|Vigan.02G050600.01)	Vigna nepalensis
3809846	A	AGGCCACCGCGAACT	34	1713.73	1.00	UTR_5_PRIME(\|58\|\|None\|Vigan.02G050600.01)	Vigna nepalensis
3812092	TGTC	T	60	2641.73	1.00	INTRON(\|\|\|None\|Vigan.02G050600.01)	Vigna nepalensis
3812346	TA	T	53	1451.73	1.00	INTRON(\|\|\|None\|Vigan.02G050600.01)	Vigna nepalensis