GBrowse Details

Vigan.01G526200.01

Basic Information:
Name: Vigan.01G526200.01
Multiple alignment
Variant Information
Position: Chr01:65051282..65055591 (+ strand)
Length: 4310
Functional Information:
Description: Similar to RING finger and CHY zinc finger domain-containing protein 1-like. [XP_004486052.1, Cicer arietinum]
GO: Molecular Function: protein binding (GO:0005515)
Molecular Function: zinc ion binding (GO:0008270)
InterPro: Zinc finger, RING-type (IPR001841)
Rubredoxin-type fold (IPR004039)
Zinc finger, CHY-type (IPR008913)
Zinc finger, RING/FYVE/PHD-type (IPR013083)
Zinc finger, CTCHY-type (IPR017921)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:32.77,22.83,8.67,9.27,16.72,10.55,8.13,7.97
Arabidopsis thaliana homolog: AT5G18650.1
Automatic updates:
Name: NM_001252907 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max RING finger and CHY zinc finger domain-containing protein 1-like (LOC100812839), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001254573 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max RING finger and CHY zinc finger domain-containing protein 1-like (LOC100792038), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:65051282..65052256 (+ strand)
Length: 975
Type: five_prime_UTR
Position: Chr01:65052257..65052306 (+ strand)
Length: 50
Type: CDS
Position: Chr01:65052408..65052495 (+ strand)
Length: 88
Type: CDS
Position: Chr01:65052593..65052649 (+ strand)
Length: 57
Type: CDS
Position: Chr01:65052770..65052802 (+ strand)
Length: 33
Type: CDS
Position: Chr01:65052946..65053023 (+ strand)
Length: 78
Type: CDS
Position: Chr01:65053181..65053224 (+ strand)
Length: 44
Type: CDS
Position: Chr01:65053318..65053358 (+ strand)
Length: 41
Type: CDS
Position: Chr01:65053973..65054055 (+ strand)
Length: 83
Type: CDS
Position: Chr01:65054179..65054270 (+ strand)
Length: 92
Type: CDS
Position: Chr01:65054364..65054433 (+ strand)
Length: 70
Type: CDS
Position: Chr01:65054579..65054620 (+ strand)
Length: 42
Type: CDS
Position: Chr01:65055000..65055125 (+ strand)
Length: 126
Type: CDS
Position: Chr01:65055126..65055591 (+ strand)
Length: 466
Type: three_prime_UTR

>Vigan.01G526200.01 class=Sequence position=Chr01:65051282..65055591 (+ strand)
ATTTTTTTCT GTCAAAATAC TTATTTCCTT AACAGTTATA GTTAGATTAG TCGCAAGAGA AGGTTTTTAC GTTTAAGATG
TAGATTTTTA AATAGACGGT TGAGATTTTT TTCTCTTTTA TCTTTCCGAA TTTGTTCCCG TCTATTCTCT CTCCTTCAGG
TGCGTATTTT ACGCTATCGC CGCCATGTCG ACAGCGTCGC TGCCAGACAG CCCCACCAGA TCTGTAACTA CCACAACACG
GTGATGCCTC CGCTGTAACC ACAACAATCC ACTACCGGAA TCAGAAAAAG ATCATCAGAA ACGGAAACAA CCGCTGGCCT
TCAATTCCCC GTTGCAATTT AAAGAAATAG GAAATACTCG TGGTTTGGGG ACAGACACTC GCATGTACCT CACCGCCTAG
GTATTTTCAA AATCAAACAA CAAATAAACA ACCATTCGTC GTTGAAATCA ATTTAAGTCA TTCTAATTCT AATGGAATTT
TGGAGTTGGC TGTGAATGCT GGACTCGATA ACACGAAGAA CATGATTAAC CCTAGCACGT CACGTGTTGA TTCTGGTGAG
AAAAGAGGAT GAGGCCAGAG GGCAAATAGG GAATAAGAAA AAAAAAACCT TGATCTTTGA TCGGGAAAGA GTAAATCTAA
ACCCTAGAAT CTGTGACGAT TGGGTTGGTT TTCTGGAATC CTCTCTTGTT GAAGCCACCC TTGTTGTCTG CCCTCTCCCC
CTCCCTCTCT CTCTCTCTCT CTCATCCCAG GTGGCCACAA TCTATTACTG CTCAAAACCG AAGCAGAGAA AATATTTGTT
TCATATTATT ATATTGCATT TAAAAAATGA AAATGGTGTC GTGTTTGTGA AAGAGACTAC TCCATTTTTA ACCCTTTCAC
TTTTGGGAAT CACGGCACGG CATAATCTAA TAAATTCCCA ACCAAGAAAC TCTCATCTTC CCTTTCTCTG TCTCGCGCAG
AGGAAACACC AACTCATGGA AGGTTCTGTC AACGAACGTC TTGATTTTGG GAAGATGAAA TACGGGTATT TTTTTTTTCG
CTATTCCTAT TGCCTATTGA ATCTCTTTTA TTTCCATATT TTTAACATAT TCATAACTTT TTTTGTTTCA ACCGTGGTGA
TAATAGGTGC AAGCATTACA GGAGAAGATG CAGGATACGT GCCCCCTGCT GCAACGAGAT CCATTCATGC CGTCACTGTC
ACAACGAGGA AGCGGTATTT CGCCTTCGTT TTCTTCTACT TTTGTTCAAA GGTTTTTCCT TTATACGCTT ATATAAACTG
GGTTTTGACT CTCTCTTTTT TTTCCAATCA GAGTTTGTCG AAGAATTCAT TTGATCGCCA CGAACTCGTT CGCCAAGATG
TTAAACAAGT ACGATGACAC TGCATTTCAT ATTGCACTGT GTTTTCTATT TGTTTTCTTT ATTTCTTAGC GATGAATACG
GGATGATGAA ACTAATGCGC TTTTTGCACC TTTTTGTTGT TGTTTCAGGT TGTTTGTTCA GTTTGTGACA CTGAGCAATC
TGTATGTATT TAAACCAAAT TTCGGTTTAA AACTTCAATT GCTTATTTTC TTGATTTTTT TTTGCAGAAG GGTGGTTGTG
ATAAGCTCCT GACTTTATTT ACCCCCTTTT CACACTTTTT TAACCTCTTA TTTTTCTTCT GAAGGTCGCT CAAGTTTGCA
CTAACTGTGG CGTCAAAATG GGAGAATATT TCTGCAACAT ATGTAAATTC TTCGATGATG ATGTAATGCT TTACCGAACT
TAATAAATGG CAGTATTGGA TTGTTTTTTA GTTTTTGAAT GTGATTGATG TACTTCTACT TTGGACTGAT CTTGCTGTAC
GGTCCTGGAT TTTGGATTCT GACGATGATA ATAAGTGTTT AATCAATTTG CATTTGCAGA CAGAGAAACA GCAGTTTCAT
TGTGATGATT GCGGGATCTG CAGGTGTGTT TGAGTATATC CTTCTGTCAT GTCATATTCA CAATTAAGTT TTCCTAAATT
GTGCCTTATG AACTAAGTAG TGGAAATTTG AAACAGGGTT GGTGGTCGGG AAAATTTTTT CCACTGCAAG AAGTGTGGTA
TGCATTTGTC ACCAAGTCTG CCTTTGTACC TTATTTACTT TGCTTTTGAA TTCCTCCCCC ACCCGAGTTT GGTCATTTTT
AAAATGGATA TATTAATACC AGTCTCAATT CATTTTAGAG CCTGTCACTG TTTTATGTAA TATATAAGTT GATGATACTG
GATCAGATTT AACTCATTCA AGTAATTGTA ATTAGTAAAG TTTAATCTTG ACACCTTTGG TTTATCAATA TCAAAGGAAC
ATTTTATATT CAACCCTTTG GGTGTATTAT ATATATATAT ATATATATTT TAAATATGTG ATTAGTCAGT TTTAAACGTT
CTGTAGAACT AACTAAATTT TGTTTTGGTG ATGGTGTGCT TGATCTTACG TCTTGTTGGT TCATACTAGA GTAGAGTTTG
AACAGAGCGC CCTCTCTTAT AAAGACTTGT CCTGCATTCT TCAACGGTTG ATTATTCTAT ATGTATGAAT TTGGCTGCTG
ATCCTATAAC ATGTCACATT AGCTATTGAA TGGAATTATT TTTTTCTTCC TTTGTTAGCT AAAGGAAATA CATTGCTCAA
TGCTCTTTTT GTTGTGTAAG GACTTCTGTA GTAATGAACT ATGCTCTACA GGGTCTTGTT ATTCAATTGG TCTGCGTGAT
AATCATTTAT GTGTGGAGAA CTCAATGAGG CATCACTGCC CCATTTGTTA TGAGGTGCTT GCTTTATTTC CCTCCTTTTT
ACCTGGATTT GGTGTATCTG CCAAACAGAG GATTTCATTT TCCATTGAAA ACCTTAGATT ACTTTGTTAA TGTTGGGACT
TTATTATTTT TGTGTAGTAT CTATTTGATT CATTGAAAGA CACGGTTGTT ATGAAATGTG GTCATACAAT GCACCAAGAA
TGTTACCACG AGATGGTAAA TCGTGATAGG TGAGTTCCTT ATCCTTAAGT CTTTGAAAAA TTCTTTAGTC TATGAGCATG
ACATATGCTT AACAAGGAAC TTGCTTTTTT TACATGGCTT AGGTATTGCT GTCCCATATG CTCCAAGTCG GTGGTGGACA
TGTCCAGGAC GTGGAAGAGA ATTGATGAAG AGGTAGCTGA TTAAATCACA GCACATGGAT GTTTCTCTTT AAATGATTTA
TAGATTTTAC ATCGTGCACT TGTCTAGTCA AAAATATTAT TATGCTTCCG TTCACTTAAG ATGTCTTTCT GATGTTTTTA
TCGTCATATG ATATTAGATT GAAGCATCTA TCATGCCTGA AGATTATCGA TACAGGAAGG TAAGGTTTCA TCCTCTGAAT
TGCTTCTAAT AATAATTACC TATTTCTATC TTCAGCTTTG AGTAACCTAC TTGATTTAAC CTTTCCCTTA ATGCACTGAT
TGGCCATGAG GGTGCTTTTG AGTATGAATG TGCATTTTTT GTCCTTTATG CCTGTGGAGC GAAATCTCTA AGCAAAACTA
TCGAAAAAAA AAGAATGAAG TTGATGTTTA TGAGAAAACT TACCCGTATG ATATTCGTGA TATATGGCAT TTTAACATGT
AATTATGTCA TGTGTTAAAA TGATAACACA AAATCCTCAT ATGCAAATCA ATTATACGTG TATATCTCGA TATAACTAAG
CATCTACCTT CCAAAAGGCT AAGAAGGCTT CCCTGCAGGT CTGGATACTA TGTAACGACT GCAATGACAC AACAGAAGTT
AACTTCCATA TTCTTGGCCA TAAATGCGGT CATTGCAATT CATATAATAC TCGCTCAATT GCGCCTCCAG TTCTTCCTCA
ATGATTGGAT TCTTGTGATT CAACTTGAAC AGTACGAGGG GAAAAAAAAT CAAAGTTAGC ACATTGGTTT ATTTCAGAGG
ATTATTGGAT TAAATTCAGC ATCAACAATA ATTATTATGT TGTGTCCTAG ATAGTTTCTT CAGGTTATTT TTCGACCACC
AACATGTGGA GTGGTATTGG TTGTCTCTTG GTTTTTGGAC AGACATAAAT ATCTTCATGC TATACTGTAA TAGGGGGGGA
ACTTTTTTCT CCCTCTAAAT TGCAGGTAAT AGTAGTGATG ATGTATTGAT ACTTGATGAT TGATTGCATT GTCTGCCGCA
GTGCTTTTTT TTAATTTGGT TGATGCTATT TGATCATGTT TTAGGTCTGT CTCGCAGATT GGTAGACAGT GATTGTTATT
AGTTTTGATT ACTCTATTCC CAGCCATGAT TTCATAAAAA GCAGAAATAG TCGTCTTTTT GCTATTGACT 

>Vigan.01G526200.01
ATTTTTTTCT GTCAAAATAC TTATTTCCTT AACAGTTATA GTTAGATTAG TCGCAAGAGA AGGTTTTTAC GTTTAAGATG
TAGATTTTTA AATAGACGGT TGAGATTTTT TTCTCTTTTA TCTTTCCGAA TTTGTTCCCG TCTATTCTCT CTCCTTCAGG
TGCGTATTTT ACGCTATCGC CGCCATGTCG ACAGCGTCGC TGCCAGACAG CCCCACCAGA TCTGTAACTA CCACAACACG
GTGATGCCTC CGCTGTAACC ACAACAATCC ACTACCGGAA TCAGAAAAAG ATCATCAGAA ACGGAAACAA CCGCTGGCCT
TCAATTCCCC GTTGCAATTT AAAGAAATAG GAAATACTCG TGGTTTGGGG ACAGACACTC GCATGTACCT CACCGCCTAG
GTATTTTCAA AATCAAACAA CAAATAAACA ACCATTCGTC GTTGAAATCA ATTTAAGTCA TTCTAATTCT AATGGAATTT
TGGAGTTGGC TGTGAATGCT GGACTCGATA ACACGAAGAA CATGATTAAC CCTAGCACGT CACGTGTTGA TTCTGGTGAG
AAAAGAGGAT GAGGCCAGAG GGCAAATAGG GAATAAGAAA AAAAAAACCT TGATCTTTGA TCGGGAAAGA GTAAATCTAA
ACCCTAGAAT CTGTGACGAT TGGGTTGGTT TTCTGGAATC CTCTCTTGTT GAAGCCACCC TTGTTGTCTG CCCTCTCCCC
CTCCCTCTCT CTCTCTCTCT CTCATCCCAG GTGGCCACAA TCTATTACTG CTCAAAACCG AAGCAGAGAA AATATTTGTT
TCATATTATT ATATTGCATT TAAAAAATGA AAATGGTGTC GTGTTTGTGA AAGAGACTAC TCCATTTTTA ACCCTTTCAC
TTTTGGGAAT CACGGCACGG CATAATCTAA TAAATTCCCA ACCAAGAAAC TCTCATCTTC CCTTTCTCTG TCTCGCGCAG
AGGAAACACC AACTCATGGA AGGTTCTGTC AACGAACGTC TTGATTTTGG GAAGATGAAA TACGGGTGCA AGCATTACAG
GAGAAGATGC AGGATACGTG CCCCCTGCTG CAACGAGATC CATTCATGCC GTCACTGTCA CAACGAGGAA GCGAGTTTGT
CGAAGAATTC ATTTGATCGC CACGAACTCG TTCGCCAAGA TGTTAAACAA GTTGTTTGTT CAGTTTGTGA CACTGAGCAA
TCTGTCGCTC AAGTTTGCAC TAACTGTGGC GTCAAAATGG GAGAATATTT CTGCAACATA TGTAAATTCT TCGATGATGA
TACAGAGAAA CAGCAGTTTC ATTGTGATGA TTGCGGGATC TGCAGGGTTG GTGGTCGGGA AAATTTTTTC CACTGCAAGA
AGTGTGGGTC TTGTTATTCA ATTGGTCTGC GTGATAATCA TTTATGTGTG GAGAACTCAA TGAGGCATCA CTGCCCCATT
TGTTATGAGT ATCTATTTGA TTCATTGAAA GACACGGTTG TTATGAAATG TGGTCATACA ATGCACCAAG AATGTTACCA
CGAGATGGTA AATCGTGATA GGTATTGCTG TCCCATATGC TCCAAGTCGG TGGTGGACAT GTCCAGGACG TGGAAGAGAA
TTGATGAAGA GATTGAAGCA TCTATCATGC CTGAAGATTA TCGATACAGG AAGGTCTGGA TACTATGTAA CGACTGCAAT
GACACAACAG AAGTTAACTT CCATATTCTT GGCCATAAAT GCGGTCATTG CAATTCATAT AATACTCGCT CAATTGCGCC
TCCAGTTCTT CCTCAATGAT TGGATTCTTG TGATTCAACT TGAACAGTAC GAGGGGAAAA AAAATCAAAG TTAGCACATT
GGTTTATTTC AGAGGATTAT TGGATTAAAT TCAGCATCAA CAATAATTAT TATGTTGTGT CCTAGATAGT TTCTTCAGGT
TATTTTTCGA CCACCAACAT GTGGAGTGGT ATTGGTTGTC TCTTGGTTTT TGGACAGACA TAAATATCTT CATGCTATAC
TGTAATAGGG GGGGAACTTT TTTCTCCCTC TAAATTGCAG GTAATAGTAG TGATGATGTA TTGATACTTG ATGATTGATT
GCATTGTCTG CCGCAGTGCT TTTTTTTAAT TTGGTTGATG CTATTTGATC ATGTTTTAGG TCTGTCTCGC AGATTGGTAG
ACAGTGATTG TTATTAGTTT TGATTACTCT ATTCCCAGCC ATGATTTCAT AAAAAGCAGA AATAGTCGTC TTTTTGCTAT
TGACT

>Vigan.01G526200.01
ATGGAAGGTT CTGTCAACGA ACGTCTTGAT TTTGGGAAGA TGAAATACGG GTGCAAGCAT TACAGGAGAA GATGCAGGAT
ACGTGCCCCC TGCTGCAACG AGATCCATTC ATGCCGTCAC TGTCACAACG AGGAAGCGAG TTTGTCGAAG AATTCATTTG
ATCGCCACGA ACTCGTTCGC CAAGATGTTA AACAAGTTGT TTGTTCAGTT TGTGACACTG AGCAATCTGT CGCTCAAGTT
TGCACTAACT GTGGCGTCAA AATGGGAGAA TATTTCTGCA ACATATGTAA ATTCTTCGAT GATGATACAG AGAAACAGCA
GTTTCATTGT GATGATTGCG GGATCTGCAG GGTTGGTGGT CGGGAAAATT TTTTCCACTG CAAGAAGTGT GGGTCTTGTT
ATTCAATTGG TCTGCGTGAT AATCATTTAT GTGTGGAGAA CTCAATGAGG CATCACTGCC CCATTTGTTA TGAGTATCTA
TTTGATTCAT TGAAAGACAC GGTTGTTATG AAATGTGGTC ATACAATGCA CCAAGAATGT TACCACGAGA TGGTAAATCG
TGATAGGTAT TGCTGTCCCA TATGCTCCAA GTCGGTGGTG GACATGTCCA GGACGTGGAA GAGAATTGAT GAAGAGATTG
AAGCATCTAT CATGCCTGAA GATTATCGAT ACAGGAAGGT CTGGATACTA TGTAACGACT GCAATGACAC AACAGAAGTT
AACTTCCATA TTCTTGGCCA TAAATGCGGT CATTGCAATT CATATAATAC TCGCTCAATT GCGCCTCCAG TTCTTCCTCA
ATGA

>Vigan.01G526200.01
MEGSVNERLD FGKMKYGCKH YRRRCRIRAP CCNEIHSCRH CHNEEASLSK NSFDRHELVR QDVKQVVCSV CDTEQSVAQV
CTNCGVKMGE YFCNICKFFD DDTEKQQFHC DDCGICRVGG RENFFHCKKC GSCYSIGLRD NHLCVENSMR HHCPICYEYL
FDSLKDTVVM KCGHTMHQEC YHEMVNRDRY CCPICSKSVV DMSRTWKRID EEIEASIMPE DYRYRKVWIL CNDCNDTTEV
NFHILGHKCG HCNSYNTRSI APPVLPQ*