Variant information

Chr01:65051282 - 65055591

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 [SNPs] [Indels] [SSR-associated indels]

SNPs

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
65051897TC521993.771.00UPSTREAM(|1834||None|Vigan.01G526100.01), UPSTREAM(|4490||None|Vigan.01G526000.01), UTR_5_PRIME(|360||None|Vigan.01G526200.01)Vigna nepalensis
65052587AG622452.771.00INTRON(|||None|Vigan.01G526200.01), SPLICE_SITE_REGION(|||None|Vigan.01G526200.01), UPSTREAM(|2524||None|Vigan.01G526100.01), UPSTREAM(|4779||None|Vigan.01G526300.01)Vigna nepalensis
65052931AC662692.771.00INTRON(|||None|Vigan.01G526200.01), UPSTREAM(|2868||None|Vigan.01G526100.01), UPSTREAM(|4435||None|Vigan.01G526300.01)Vigna nepalensis
65054920AG632426.771.00INTRON(|||None|Vigan.01G526200.01), UPSTREAM(|2446||None|Vigan.01G526300.01), UPSTREAM(|4857||None|Vigan.01G526100.01)Vigna nepalensis
65055200GC562263.771.00UPSTREAM(|2166||None|Vigan.01G526300.01), UTR_3_PRIME(|75||None|Vigan.01G526200.01)Vigna nepalensis
65055279AT572271.771.00UPSTREAM(|2087||None|Vigan.01G526300.01), UTR_3_PRIME(|154||None|Vigan.01G526200.01)Vigna nepalensis
65055328AT592247.771.00UPSTREAM(|2038||None|Vigan.01G526300.01), UTR_3_PRIME(|203||None|Vigan.01G526200.01)Vigna nepalensis

Indels

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
65052309AATT451726.731.00INTRON(|||None|Vigan.01G526200.01), UPSTREAM(|2247||None|Vigan.01G526100.01), UPSTREAM(|4903||None|Vigan.01G526000.01)Vigna nepalensis
65055353AAG441291.731.00UPSTREAM(|2012||None|Vigan.01G526300.01), UTR_3_PRIME(|229||None|Vigan.01G526200.01)Vigna nepalensis

SSR-associated indels

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
65052005(CT)9(CT)10288010.93UPSTREAM(|1943||None|Vigan.01G526100.01), UPSTREAM(|4599||None|Vigan.01G526000.01), UTR_5_PRIME(|251||None|Vigan.01G526200.01)Vigna nepalensis
65053628(TA)10(TA)8472061.731.00INTRON(|||None|Vigan.01G526200.01), UPSTREAM(|3566||None|Vigan.01G526100.01), UPSTREAM(|3737||None|Vigan.01G526300.01)Vigna nepalensis