GBrowse Details

Vigan.01G499400.01

Basic Information:
Name: Vigan.01G499400.01
Multiple alignment
Variant Information
Position: Chr01:62832633..62835975 (+ strand)
Length: 3343
Functional Information:
Description: Similar to Eukaryotic translation initiation factor 3 subunit K. [I1MS38, Glycine max]
GO: Biological Process: regulation of translational initiation (GO:0006446)
Cellular Component: cytoplasm (GO:0005737)
Cellular Component: eukaryotic translation initiation factor 3 complex (GO:0005852)
Molecular Function: translation initiation factor activity (GO:0003743)
Molecular Function: binding (GO:0005488)
Molecular Function: ribosome binding (GO:0043022)
InterPro: SAC3/GANP/Nin1/mts3/eIF-3 p25 (IPR005062)
Eukaryotic translation initiation factor 3 subunit K (IPR009374)
Winged helix-turn-helix DNA-binding domain (IPR011991)
Translation initiation factor 3, subunit 12, N-terminal, eukaryotic (IPR016020)
Armadillo-type fold (IPR016024)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:90.91,75.69,64.57,44.03,88.08,146.78,85.33,46.86
Arabidopsis thaliana homolog: AT4G33250.1
Automatic updates:
Name: NM_001248227 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max CSN8/PSMD8/EIF3K domain-containing protein (LOC100306445), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:62832633..62832710 (+ strand)
Length: 78
Type: five_prime_UTR
Position: Chr01:62832711..62832824 (+ strand)
Length: 114
Type: CDS
Position: Chr01:62832954..62833010 (+ strand)
Length: 57
Type: CDS
Position: Chr01:62833104..62833154 (+ strand)
Length: 51
Type: CDS
Position: Chr01:62833254..62833316 (+ strand)
Length: 63
Type: CDS
Position: Chr01:62833954..62834004 (+ strand)
Length: 51
Type: CDS
Position: Chr01:62834077..62834143 (+ strand)
Length: 67
Type: CDS
Position: Chr01:62834954..62835036 (+ strand)
Length: 83
Type: CDS
Position: Chr01:62835471..62835674 (+ strand)
Length: 204
Type: CDS
Position: Chr01:62835675..62835975 (+ strand)
Length: 301
Type: three_prime_UTR

>Vigan.01G499400.01 class=Sequence position=Chr01:62832633..62835975 (+ strand)
GGATTCCTTT GTCTCTAATA AAAAGAGAAG GGTTTGGTAG AAAGAAGTAG GGTTTGAGTT GCAGAGCATA CGAGAGAGAT
GGGAAGAGAA AGAGAGGCAA CGAAGGTAGC ATACACAGTG GAGCAGCTTG TGGCCTTCAA TCGATACAAT CCCGATATTC
TTCCAGATCT CGAAAACTAT GTCAACGATC AGGTTCCTTC TCCCTCTCTT TTCTCTATAT CCAATTTGCT TCCTCTTCCA
CTTTTTCCTA AATCAAAAAC CTAGGTTTCC AACCACGCAC TTCTATGTCA ATGCTCAATA ACAATTTCTT TCTCTTGCTA
GGTTTCGTCT CAAACATATA GCTTGGACGC CAATCTCTGC CTTCTTCGCC TTTACCAGGT ATTTCTCTTT TTTCCATCTC
AATGAAACTT ATTAATTGAG TAGTTGTGAG TTGCTAGTTG CTAGTAATAG TTTGATTATC GATTGCTGCA GTTTGAACCG
GACAAAATGA GTTCCCAGAT TGTGGCCCGC ATATTGGTTA AGGTGTGCTT ATTTTTTTTC TGTGTTGGCT TATTGGTTGG
ATTGTGAATG CCATCACGTG CTTAAATTTT GTTAATCGAT TTTCTTTTTA TCTTTGAACA GGCGCTTATG GCAATGCCGG
CCCCAGATTT CAGCCTATGT CTCTTTTTAA TTCCAGAACG TGTGGTATGA TTCTCGCAGA TTATGATTCT TTTCTTTCTT
TTATTTTGTG TTGCTTTCAC TCACAAATAA ATAGAGGTTT GAATCAGTTA GTGACTCTAG TTAATGATCA ATCTGTTGCA
TTTTATGAAT TTTACTCGGT TGAATTTATA ATGTTTTATG GGATTTGCTA TGGCAATAAT TAAAGTACGC CAAGTTGTCC
CAAGTGATGA CAATACACAT TTCAGGGACG AAGCATTAGA ATATTGATTT TGCCAATTCC TTCCCAACCG AAATCATTCT
TGAACATGTG ATAGCAATTC GGCAAATTTT CCAAACACTC CTCAATTATC CTTTTTAATT AGTTTTCAAG TTGCCAATTC
TTTAGTTGTA TAACTTCAAC CACAGAAAGG AAAAGCAGTC AAGGCAGTGT AGCTAATCCA AAAGTTATAG GATAGTTTAG
TTCAAATCCA TGAATGAACT GAAAGCGAAA ATGAGAATGG GAGGTCTGTT GAAGTTCCAA TTCAACCTTA AATTTATAAG
TTTTGGTTTT ATATGCCAGT TTAGCATTCA GCCTAATCAT ATCATTATCA ATGCTTTTCC TTGTTTTTGG ACCTTACTGC
TGTTGATTTA TTTCTTTGTG TTATTCTTTT ATGAATCTTA GCAAATGGAG GAGCAGTTCA AGACTTTGAT TGTTCTGTCT
CATTATTTGG AGGTAAGCTT TGGCGTTATT TGTTCTAGCA CTAATTAGGC ATTTAAAATT AGAAATTAAT ACATGCCTCT
TCAGACAGGA AGATTTCGTC AGTTCTGGGA TGAAGCAGCA AAAAGTCGTC ATATAGTTGA AGCTGTGCCA GGTTGTTATA
TATTTTTAAT TTATGAAATG GTAATTAGAT ATAATGACTG ATGAACTTTG AATAATTTAA TCAATTGATT TCAAATCTAA
AAAAAAATAC GAATCCCTTG TTGCTGCTTT ATTTCGTCAT GCTCTATCTG GTTAATTAGA ACTTGCCATT TGGAAGCTTA
ATTATCCCCC TTGCCATGAA ATTGAGCTTA TATTATAGGA CTAGCCATAC ATATTATATA GTTGTCTTCT CTTCCCCTTT
TTTGAAATAA TGCACTCTTT GTAATGTTAT GCTACACTGT CTTATATAGA TGATAGATGA TAATATAGCT TTGTCGGGAA
ACAACTGGGA TTTTCACCTT GGGTTCATTT GATACAGGAG GAAAATTGAG TAGACGATGA TAAAAAGGTG AGTGAAATTG
GTCAGAAATG AAACGAAAAT TAAAGGTGTT TAGTTGAATA GGAATAGTGA ATAAATCAGA GATATTGAGA TGAATATGTG
AGAAATAGAA TGGAAAGTGG TGGTGGAATC CACTAACTTT GATTTTCTCC TCGGTATCTC TATTATGCTA AGCGAACCTA
ATTAAGTCTG TCATCCTATT TCTAATCTAA CACCCCTCCC CCCATCAAAA CCTGCACACC ATTAGGCTTG ACGAAGGCTT
CCCCTTGTTG ACACTGATTA AGCTCGTAGG CTTCATTTTT TTCCTCATTC TTATTAGAGA TCAGATTAAT GGTGTGCCAT
TGACATTGAC TAGGCTTAAA AGATTCGTTT TTCCCTATTA ATTAATGCTT ATATAGACGC TAAATTTGAA TTTGATTGCA
GGGTTTGAGC AGGCAATTCA AGGATATGCA GTCCATGTCC TTTCCCTGAC TTACCAAAAG ATTCCTAGAA CTGTTCTTGC
TGAGGTATGT TTGTTATTTT GTCCATTTCA AGCATTGTCT CATTGCATAG TGGAAGAGTG TTTCATCTCT AGCTAAGCTA
GAAGTCGTTA GCCCAAAATC CTTGTTTTTA TTCCCTAATT GCTTGTTGAA CTGGTGTTTA ATGTGACTCG TACCGTAAGA
ATGCAACACT TCTGAAGTCC GCTATGATCC TCTATTTATT CTTTGGATGT TAAATAGTTC TTGGAAACTT TGGCAACTTG
TTATTTGCAT TTTTCTCACT GTTTGTCAGA AACAATTGAG TCAAACCATT GACTGGTATT GTGGATTCTT TTATTAGCCG
TTGGTTCTGT AAATTATGTT GTTTTTATGA ATTCCACTTA CCTGTACGAG TCAGCAGGAA CCTAGTTTCT CATTATTTTG
AAATGTATGA TCATTGATTC TTTGTTAAAC TTTCATAGGC TATCAACATC GAAGGTTTAT CCTTGGACAA ATTTCTTGAG
CACCAAGTAG CCAACAGTGG TTGGGTTATT GAGAAAAGCC AAGGCAGGGG TCAAGTCATT GTCCTTCCGA GAAATGAATT
TAATGACCCA GCTTTGAAGA AAAATGCTGC AGACAGTGTA CCATTGGAGC ACATTACCCG TATCTTCCCC ATTCTTAGTT
GATTTTTTTT CCGTGTAGAA TGCGAATTTT CTTTCTGAAG GATTTGTACG AATGAGACCA GTTGGAGCAA CATCTTACAA
TTTTCCCCTC GATACTTAAA TTACAATTAG TGGACACCTA TTGTAGTTTA CTCATGTTTT ATCGTCCTGT CTGAAATTAA
TCTATTGTGG GTACGTTCTA AAATACGACT CTATTTATTA TTCTCTTTAG TTTACAGGGT GCGAAGGGCG AGTTTTAAAG
AAACTTTTAT TGCATATTGT GCTTTTCTTT AGACCGCTAA AGAGAATTAG AATTTTCCTA GTA

>Vigan.01G499400.01
GGATTCCTTT GTCTCTAATA AAAAGAGAAG GGTTTGGTAG AAAGAAGTAG GGTTTGAGTT GCAGAGCATA CGAGAGAGAT
GGGAAGAGAA AGAGAGGCAA CGAAGGTAGC ATACACAGTG GAGCAGCTTG TGGCCTTCAA TCGATACAAT CCCGATATTC
TTCCAGATCT CGAAAACTAT GTCAACGATC AGGTTTCGTC TCAAACATAT AGCTTGGACG CCAATCTCTG CCTTCTTCGC
CTTTACCAGT TTGAACCGGA CAAAATGAGT TCCCAGATTG TGGCCCGCAT ATTGGTTAAG GCGCTTATGG CAATGCCGGC
CCCAGATTTC AGCCTATGTC TCTTTTTAAT TCCAGAACGT GTGCAAATGG AGGAGCAGTT CAAGACTTTG ATTGTTCTGT
CTCATTATTT GGAGACAGGA AGATTTCGTC AGTTCTGGGA TGAAGCAGCA AAAAGTCGTC ATATAGTTGA AGCTGTGCCA
GGGTTTGAGC AGGCAATTCA AGGATATGCA GTCCATGTCC TTTCCCTGAC TTACCAAAAG ATTCCTAGAA CTGTTCTTGC
TGAGGCTATC AACATCGAAG GTTTATCCTT GGACAAATTT CTTGAGCACC AAGTAGCCAA CAGTGGTTGG GTTATTGAGA
AAAGCCAAGG CAGGGGTCAA GTCATTGTCC TTCCGAGAAA TGAATTTAAT GACCCAGCTT TGAAGAAAAA TGCTGCAGAC
AGTGTACCAT TGGAGCACAT TACCCGTATC TTCCCCATTC TTAGTTGATT TTTTTTCCGT GTAGAATGCG AATTTTCTTT
CTGAAGGATT TGTACGAATG AGACCAGTTG GAGCAACATC TTACAATTTT CCCCTCGATA CTTAAATTAC AATTAGTGGA
CACCTATTGT AGTTTACTCA TGTTTTATCG TCCTGTCTGA AATTAATCTA TTGTGGGTAC GTTCTAAAAT ACGACTCTAT
TTATTATTCT CTTTAGTTTA CAGGGTGCGA AGGGCGAGTT TTAAAGAAAC TTTTATTGCA TATTGTGCTT TTCTTTAGAC
CGCTAAAGAG AATTAGAATT TTCCTAGTA

>Vigan.01G499400.01
ATGGGAAGAG AAAGAGAGGC AACGAAGGTA GCATACACAG TGGAGCAGCT TGTGGCCTTC AATCGATACA ATCCCGATAT
TCTTCCAGAT CTCGAAAACT ATGTCAACGA TCAGGTTTCG TCTCAAACAT ATAGCTTGGA CGCCAATCTC TGCCTTCTTC
GCCTTTACCA GTTTGAACCG GACAAAATGA GTTCCCAGAT TGTGGCCCGC ATATTGGTTA AGGCGCTTAT GGCAATGCCG
GCCCCAGATT TCAGCCTATG TCTCTTTTTA ATTCCAGAAC GTGTGCAAAT GGAGGAGCAG TTCAAGACTT TGATTGTTCT
GTCTCATTAT TTGGAGACAG GAAGATTTCG TCAGTTCTGG GATGAAGCAG CAAAAAGTCG TCATATAGTT GAAGCTGTGC
CAGGGTTTGA GCAGGCAATT CAAGGATATG CAGTCCATGT CCTTTCCCTG ACTTACCAAA AGATTCCTAG AACTGTTCTT
GCTGAGGCTA TCAACATCGA AGGTTTATCC TTGGACAAAT TTCTTGAGCA CCAAGTAGCC AACAGTGGTT GGGTTATTGA
GAAAAGCCAA GGCAGGGGTC AAGTCATTGT CCTTCCGAGA AATGAATTTA ATGACCCAGC TTTGAAGAAA AATGCTGCAG
ACAGTGTACC ATTGGAGCAC ATTACCCGTA TCTTCCCCAT TCTTAGTTGA 

>Vigan.01G499400.01
MGREREATKV AYTVEQLVAF NRYNPDILPD LENYVNDQVS SQTYSLDANL CLLRLYQFEP DKMSSQIVAR ILVKALMAMP
APDFSLCLFL IPERVQMEEQ FKTLIVLSHY LETGRFRQFW DEAAKSRHIV EAVPGFEQAI QGYAVHVLSL TYQKIPRTVL
AEAINIEGLS LDKFLEHQVA NSGWVIEKSQ GRGQVIVLPR NEFNDPALKK NAADSVPLEH ITRIFPILS*