GBrowse Details

Vigan.01G479100.01

Basic Information:
Name: Vigan.01G479100.01
Multiple alignment
Variant Information
Position: Chr01:60792193..60797797 (+ strand)
Length: 5605
Functional Information:
Description: Similar to Uncharacterized protein. [I1LVR1, Glycine max]
InterPro: Afadin/alpha-actinin-binding (IPR021622)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:1.93,3.61,12.83,8.68,7.46,5.64,9.04,10.83
Arabidopsis thaliana homolog: AT2G18876.1, AT5G57410.3
Automatic updates:
Name: NM_001255143 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100811569 (LOC100811569), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:60792193..60792672 (+ strand)
Length: 480
Type: five_prime_UTR
Position: Chr01:60792673..60792705 (+ strand)
Length: 33
Type: CDS
Position: Chr01:60792779..60792807 (+ strand)
Length: 29
Type: CDS
Position: Chr01:60792901..60793012 (+ strand)
Length: 112
Type: CDS
Position: Chr01:60793107..60793204 (+ strand)
Length: 98
Type: CDS
Position: Chr01:60793295..60793391 (+ strand)
Length: 97
Type: CDS
Position: Chr01:60793583..60793672 (+ strand)
Length: 90
Type: CDS
Position: Chr01:60793775..60793837 (+ strand)
Length: 63
Type: CDS
Position: Chr01:60793979..60794053 (+ strand)
Length: 75
Type: CDS
Position: Chr01:60794134..60794199 (+ strand)
Length: 66
Type: CDS
Position: Chr01:60794292..60794369 (+ strand)
Length: 78
Type: CDS
Position: Chr01:60795013..60795123 (+ strand)
Length: 111
Type: CDS
Position: Chr01:60795205..60795282 (+ strand)
Length: 78
Type: CDS
Position: Chr01:60795369..60795488 (+ strand)
Length: 120
Type: CDS
Position: Chr01:60796589..60796632 (+ strand)
Length: 44
Type: CDS
Position: Chr01:60796714..60796819 (+ strand)
Length: 106
Type: CDS
Position: Chr01:60796820..60797797 (+ strand)
Length: 978
Type: three_prime_UTR

>Vigan.01G479100.01 class=Sequence position=Chr01:60792193..60797797 (+ strand)
GAAAGTCGCA TCTCAACCAA CGAAAATAGA AAACAAAAAC CTGCACGTCT AATTCAAGAG ATGTTTGCTT TCACTTCATT
TCTTCCCAAA CCCAAAATCC AGAGTCAAAA CGATTCTCTA GTTAGGCGCC ATAATTCACA ACCAAAAATA AAGTTCGCGA
TTGCCACCTT GCATCTTTCT ACCCAATCAA GAACCGCCAC GTCACTAATC TTTCAAAGAA AAAGTGCAGG TGAAGCCAGC
TGTGAGGGTT TAATTGGAGG GTATAGAAAC AAATATCCAG ATCCGAGTAC AGAGTATAAT TCGGAGACAT AGTCATAATT
CAGAATTCAG CATCCCCAAC CATAGCAACC GCTTTATTGA TTGATTCCAC TTCAAATTTG GGCACCGCTT AAAATCTCAG
AATTTAGATC TAAAACTGAT ACTACTCTCA CTCGAGTCAC ACGCAGAGCC CAGAAACACT TCTTTCTCAC TCTAACAACA
ATGCCTCCCA CTGAAGGAGA CTTCGATCTT AGGGTAAAAC TCCGAGAATC CCTATTTACG TTTTTGTTCG TCTCTATTTC
TCTCACACTC TCTCTTTTCT CTGCAGCATC CGTCTCAATC TGCCTTCGCT GCCGGGTTAG TTTAGAACTT CAGAAAACCC
TATGCTCTTC AATTTTTCTT CCACTGTAAT CCATTCGGAG GGTTTTCGTT TTCCTTTCTT TGTTTCAGAG AGTACACGTT
CGCCGATGTC GAGAATTTGG AGCATTGCGC TAAGTATCTC AACCAATCGC TCGTCACGTT CGGATTCCCT GCTTCGCTCG
ATCTCTTCGC AAATGACCCC GTGAGAATTT AACGGATCTT CACTTAACGT CGTTTTTTGC GCCAATGTGT GTTCGTGTGT
TATGTGAATG GTGTTGTTTT GGAAAATGTG GTAGGTTTCC ATTGCGAGGA CTTGCAATTG CATTTACTTT CTGCTCCAAC
AGAGACAGCG CGATGTCGAA TTTAGAGAGT CTGCTAATGA TCAAAGACAA CGGTAGTTCC TGTATGAACC ATTGTTTAGT
GTTTCCCTCG TGATGCATTA TCTGAACGAG TTCAATGTGT TTTGCCTTTG CTGTTGTTGT AGACTGTTGT CTGACATCTC
GAGGTTAGAA GCCAAAGTGG AGAGGCTCGA AGGTCAACTA CAAGTCAAAG ACAGGGAGAT AGCGACTATT ACTAGAACAG
TAAGGAGATG CTTGGATTTT GGTTTTGACA AACGTAAAGC ATATTATTGT CTTGCTTAAA TGAAATTTTC AGAGGCGTGT
CTCTATTGTG CAAGCGGAAA ACAATTTCCT TATTTGTGCG CCGATGCCAC CCGAATTTAT TTGTTTATTT ATTGTTTTAT
TTTAATTGGG ATTGAGTTCC TGTGGTATAG GAAGCTAAAA ACACGGCAGC TTTGAAGGCT CAAATTGAGA AGCTGCAGCA
GGAGAGGGAT GAGTTTCAGA GAATGGTTAT TGGTAATCAG GTTAGAATTT GATCTACTTT GCTTATTTTG GCGTCTTGTT
TGGATGTTCA AAATGGATAA GCCTCTGACT CTTGTCAATC TGACCAATGA ATGGTGTTAA AGCAAGTAAA GACTCAACAA
CTGCATGAGA TGAAGAAGAA GGAAAAGGAA TACATAAAAT TGCAGGTGAG ATATCTTTGC TTTTCTATAG TTCGATAAGA
AGGGAATTGG TGCTCTTGCG TCATAGGAAC TTTGCCGATG CTTGATTGAA TGATTTCACA GTTTATCAGA TTTTGGAAAT
GAAGGGCTGG TATTTTGTAT TTGCAGGAGA GACTAAACCA AGTTTTAATG GAGAAGAAGA AAGAGTCTAG GTCGGGCATG
GAGATAATGA ATTTGCTTCA GGTGCGAGCT GTCCATTTAG TTTGGACTTG GAAGATATTC AGTTTCATGA TGCTTTTGGT
TTTTATAATG TGTGTAAACA GAAGGAAGGG AGGCAACGAG GAACATGGAA TGGGAAGAAA GCTGACAATG ATTTTTACAA
GAAGATTGTA TGCTGAATAA TAAGCTTTCA CCTTGTTTTT ATAGTTTTTT GCATTCTGGA AACATCATCA TCTCGTACCC
TTTAATTTAA TATTGAAAGG TGGATGCTTA TGAGGCAAAA AATCAAGAAC TGATGGCAGA GAATACTGAT TTAAGAGCAT
TGTTGAGATC AATGCAGGTA GGTTCTTGAT TTGTAATTAT TGTTATATGC TGAAATTTCT ACTTGCAGTT ATTTATGAAT
GCAAACTGTT TCATGTTTTC CCATTTCACT GATTCTCCGT GATGTAATTT TGTATCTTTC ATAAACTTTT GCTTTGTTAT
AATTCAGTCA CAATATGCTT CCTTCTTGAA TGTTTTCATC TTGCCTTCAG TTTTAGAGAG GTCTCTAATA TTCCCTTTCT
TCCCAAGTGA ATATCTATGA GTGAATGTGT GTACACACCT CTGCTGTACA TTAATGGGCT TGCCTGTTTC ATTCTATTGT
TTTTTTCATT ATTAAAAGTT TTATGTCTTT GGTTTGGTCA CAAAAATCAG TAATATAAAA AATTTGATGG GTTATGGGAA
TCAATTATTT TTTCATGCAA AGTACAAAAT GATGGATGGT CATTTTAACT AAACGGGAAA TGGAAGAAGA TTCACATGGT
AGTGTATTTG TGATATTGGT GGCTTTCAGC AAATTTCTTT TCTGATTTCA TCCAATATTC TAAATTCTGT CTCCTACAGT
CTTTACTTGC CCCTGTATAA AGGCCTTTAT TCTGTGATGC ACCCCTCTAA AGCAGGTTGC TCAACCTAGA TTATGAGATT
TGTGAGTATA CTGATTACAG GTGGATATGC GTGATTTCTT AAATGCGCCT AACGGACTAC CTAAGCAGTC TCTCACAGGC
AATGAAAGAG TTGAAAGTGA TCCTTCACAA TCTCCATTGG TTGGGAAAAT GGTAAAAAGC TTATTAAATT TTCATACTTG
GTTCCGCTTT CCAACTGCCT TTTGATATTG TTAATGAGTT TGATACTTGC AGGACGTATT TGACCTACCT TTTCATATGG
CCAGAGATCA AATAGAAGAA AGCCTTCGTA ACAAAATGGC TTCTATAAAG GTACTTACTG ATTTTTTTCT TCAAGTATTT
ACATACATGA ACTGTTTGTC TACGATTGTT AAGTGTTTGA AAATTGAAAT ATGAAGGAGC GCATGGTTCA ATTGCAAGAT
GCTCAAAAGG GAGCAGAAGT TACTTCGGAG GCTACTGAGA GGGAACTTGA ACTCGAAGCT CAGCTTGTTG AAGCAAGAAG
CATCATACAG GAGCAGGTAA TGTTTTGTGT TTTTCGAGGT AGGTCACAGG CATTTAGAGC CTGTTTGATG CTTTGACTGT
GATGTAAACC AAAAAAAGCC GTTTTTTAGT CAAAGAAGCT CTTCTTTGTT ATGTTTCGTA GTGTTTAGCC AAAATACAAA
ATGATCTTTA AAATGACAGG TGGAATAAAC AGATGTGTTA GAAGAAGCAA GAATAGGTGC TTCGCTTGTG TACATAGCCA
GAAAAATGGA GGGAAAATAG AAAGAAAGGC AACACTGCTG TTTTGAGTGT TTTTGTCTAC ATATATGCTA GGTTAATTGA
AATTTCAAGA TACTCTAAAA TCAACTTTTG GTATGACTTA ATATTGTTTT GTCTGTTGTC TGCTAAAGAA AGTCTATATC
TGCTACTATT ATCATAAAAC TACTAATTTA AAGGCTTAAA TCCACTTCTG GTTCCCATAG TTGTGAATGT GCAATTTTGG
TTCCTATAAA ATTTTAGTGG CACGTTCCAT TCCCTAATTT TCCAAAATTA AGCAATTTTG GTCCACTGCT AATACATTAT
GAATCTCTAA AATTCTCTAG TAATAATAGT TTGTTACTTA TTCACACAAG ATAGTCATAG TAATCTTTAA TAACAAGTTT
TAATATCTTT TATCACTTAA AACACACAAG TAGTTTTGTT AGGATAGATT ATGTATTTAT GTTGGACCAA AATTGCTTAA
TTTTGGAAAA CTGTAGGACC AAATGTGCTA TTAAATATTT TTTAGAGACC TAAATTGCAC ATTGACTTCA TTATGGAGAT
TGAAATTGGA TTTAAGCATA ATTTAAATCT GTGTAACTTC TATTCTTCAT TAACTGAAAG TTGAAAAGCA CGTGGATCAA
TATATATGTG GACTCTATAG TTTTTCTTCT TTTTTTTTTC TGGGGGAGGG GGTGTCACAC TAAACGAGTA TCTCAATTCA
AACACTTCTC TCTTTCTATA AATCCAAGTA GTTTTCCTTT TAATCATGTT TTTCAAATAA TTGCCTGACA GTATTTTTTT
AGCATTGGTT TGTGTTAATT TGACTCTGCA TTACAAATTT TTTAATGGAT TAATGTGATA ATGCGTCTTA TCGCAGGCAT
CAATTATGTC TAAACATCTT TCAAAATCTG ATAGGCCAAG GTACTCTATA TATTTGATTT GTTAAGAACT ATCTAATTAT
GAAAAGATGC AGTATGTTTA AATGCTTTTC AACCTTTACA GGGATTCTAT CATTCCAGCA CCGGCTGAGG TATGTATTTA
TTATGTCTAT GTTGTTTCGG CCAAGTATTT GTTACGTCCA TTTAGCAGTC AAACTCGTTT CATATAATAG TTTTGAGTAT
TGTCATTGGA TTTGTGGTAA TTGGTTGGTA AGTAGCTTTG GAAAATTTTT TGTAGTGAGG TATACTTTAT TTTGTAAAGT
TATTATGGCC TTAAACTATC TTCAGGAAAT TCTCATTGCT TGAATATCCA ATCTGGGTCT TAGTTTCTTG AATTTCTGAT
CGAGATAGTT TATAGTTCTC ATGTGTGATA TAACATCTGA CATTTGTATA TCCAAAAGTT CTCCCGTATG AACTTTACAA
TGCTGAAAGT ATCTTCAAAA TGCATTCTGT CTAAAGCCCA CCGGTTTACC TGTTGTGGGA TTAACTCGTT GACCTTTGAA
GACACCTGGT TTTGAAGACA AGACTGGTCT GTTCCTTAAA TTATGAAGCT AAGTTGTTAG TACTGAGAAT TGTAGAAATA
TAAAGGATAG TAGAAAAGGA TTTCCATCAT ACTTATGCGG CTACTGGCTG CGGAAGGGAA TCAAAATATT AGCGTTGGCA
TGCTCTTGTG TGCCTTTGTG GTGTTAGCAG GTGTTGGTGT GGAAAGAGGG GTTTGGTGGT GATTTAGAAT CAACCAATTT
TGTGGTCTTC GCTTGAAATG TTGATTAACA TATGAGTTAG GATTCGATCA TAAAGTCGAC ATCATTATCT TGCATAGTTA
TACTGGTAAT TGGCAGGTTC CAATATGAAA TGAGGTAATA CAGTTGTGTT CATGGTGTCA CTTTTAGCTC TATAGATTTA
TTGTTACTTA TTGGTCACAT TGATGGCGCC AGTGTTGTGA ACTTGTTCTT TCTTGATTTG CAGGCAGTAT GTAATTAACA
AAACCGAGGC TACTCATATT TGATGCATCG CATGATCAAC TGAGTTGGTT CTGCACTGCA GTATAACAGG CACGGGCATC
GTTCTTTTAG ACTATTTAAC TAATCTTGCT TGTTCATCCT GCACTGCCGT AGTTTATGTT AACAGGCAGA GTATGGTTGA
ACGTC

>Vigan.01G479100.01
GAAAGTCGCA TCTCAACCAA CGAAAATAGA AAACAAAAAC CTGCACGTCT AATTCAAGAG ATGTTTGCTT TCACTTCATT
TCTTCCCAAA CCCAAAATCC AGAGTCAAAA CGATTCTCTA GTTAGGCGCC ATAATTCACA ACCAAAAATA AAGTTCGCGA
TTGCCACCTT GCATCTTTCT ACCCAATCAA GAACCGCCAC GTCACTAATC TTTCAAAGAA AAAGTGCAGG TGAAGCCAGC
TGTGAGGGTT TAATTGGAGG GTATAGAAAC AAATATCCAG ATCCGAGTAC AGAGTATAAT TCGGAGACAT AGTCATAATT
CAGAATTCAG CATCCCCAAC CATAGCAACC GCTTTATTGA TTGATTCCAC TTCAAATTTG GGCACCGCTT AAAATCTCAG
AATTTAGATC TAAAACTGAT ACTACTCTCA CTCGAGTCAC ACGCAGAGCC CAGAAACACT TCTTTCTCAC TCTAACAACA
ATGCCTCCCA CTGAAGGAGA CTTCGATCTT AGGCATCCGT CTCAATCTGC CTTCGCTGCC GGAGAGTACA CGTTCGCCGA
TGTCGAGAAT TTGGAGCATT GCGCTAAGTA TCTCAACCAA TCGCTCGTCA CGTTCGGATT CCCTGCTTCG CTCGATCTCT
TCGCAAATGA CCCCGTTTCC ATTGCGAGGA CTTGCAATTG CATTTACTTT CTGCTCCAAC AGAGACAGCG CGATGTCGAA
TTTAGAGAGT CTGCTAATGA TCAAAGACAA CGACTGTTGT CTGACATCTC GAGGTTAGAA GCCAAAGTGG AGAGGCTCGA
AGGTCAACTA CAAGTCAAAG ACAGGGAGAT AGCGACTATT ACTAGAACAG AAGCTAAAAA CACGGCAGCT TTGAAGGCTC
AAATTGAGAA GCTGCAGCAG GAGAGGGATG AGTTTCAGAG AATGGTTATT GGTAATCAGC AAGTAAAGAC TCAACAACTG
CATGAGATGA AGAAGAAGGA AAAGGAATAC ATAAAATTGC AGGAGAGACT AAACCAAGTT TTAATGGAGA AGAAGAAAGA
GTCTAGGTCG GGCATGGAGA TAATGAATTT GCTTCAGAAG GAAGGGAGGC AACGAGGAAC ATGGAATGGG AAGAAAGCTG
ACAATGATTT TTACAAGAAG ATTGTGGATG CTTATGAGGC AAAAAATCAA GAACTGATGG CAGAGAATAC TGATTTAAGA
GCATTGTTGA GATCAATGCA GGTGGATATG CGTGATTTCT TAAATGCGCC TAACGGACTA CCTAAGCAGT CTCTCACAGG
CAATGAAAGA GTTGAAAGTG ATCCTTCACA ATCTCCATTG GTTGGGAAAA TGGACGTATT TGACCTACCT TTTCATATGG
CCAGAGATCA AATAGAAGAA AGCCTTCGTA ACAAAATGGC TTCTATAAAG GAGCGCATGG TTCAATTGCA AGATGCTCAA
AAGGGAGCAG AAGTTACTTC GGAGGCTACT GAGAGGGAAC TTGAACTCGA AGCTCAGCTT GTTGAAGCAA GAAGCATCAT
ACAGGAGCAG GCATCAATTA TGTCTAAACA TCTTTCAAAA TCTGATAGGC CAAGGGATTC TATCATTCCA GCACCGGCTG
AGGTATGTAT TTATTATGTC TATGTTGTTT CGGCCAAGTA TTTGTTACGT CCATTTAGCA GTCAAACTCG TTTCATATAA
TAGTTTTGAG TATTGTCATT GGATTTGTGG TAATTGGTTG GTAAGTAGCT TTGGAAAATT TTTTGTAGTG AGGTATACTT
TATTTTGTAA AGTTATTATG GCCTTAAACT ATCTTCAGGA AATTCTCATT GCTTGAATAT CCAATCTGGG TCTTAGTTTC
TTGAATTTCT GATCGAGATA GTTTATAGTT CTCATGTGTG ATATAACATC TGACATTTGT ATATCCAAAA GTTCTCCCGT
ATGAACTTTA CAATGCTGAA AGTATCTTCA AAATGCATTC TGTCTAAAGC CCACCGGTTT ACCTGTTGTG GGATTAACTC
GTTGACCTTT GAAGACACCT GGTTTTGAAG ACAAGACTGG TCTGTTCCTT AAATTATGAA GCTAAGTTGT TAGTACTGAG
AATTGTAGAA ATATAAAGGA TAGTAGAAAA GGATTTCCAT CATACTTATG CGGCTACTGG CTGCGGAAGG GAATCAAAAT
ATTAGCGTTG GCATGCTCTT GTGTGCCTTT GTGGTGTTAG CAGGTGTTGG TGTGGAAAGA GGGGTTTGGT GGTGATTTAG
AATCAACCAA TTTTGTGGTC TTCGCTTGAA ATGTTGATTA ACATATGAGT TAGGATTCGA TCATAAAGTC GACATCATTA
TCTTGCATAG TTATACTGGT AATTGGCAGG TTCCAATATG AAATGAGGTA ATACAGTTGT GTTCATGGTG TCACTTTTAG
CTCTATAGAT TTATTGTTAC TTATTGGTCA CATTGATGGC GCCAGTGTTG TGAACTTGTT CTTTCTTGAT TTGCAGGCAG
TATGTAATTA ACAAAACCGA GGCTACTCAT ATTTGATGCA TCGCATGATC AACTGAGTTG GTTCTGCACT GCAGTATAAC
AGGCACGGGC ATCGTTCTTT TAGACTATTT AACTAATCTT GCTTGTTCAT CCTGCACTGC CGTAGTTTAT GTTAACAGGC
AGAGTATGGT TGAACGTC

>Vigan.01G479100.01
ATGCCTCCCA CTGAAGGAGA CTTCGATCTT AGGCATCCGT CTCAATCTGC CTTCGCTGCC GGAGAGTACA CGTTCGCCGA
TGTCGAGAAT TTGGAGCATT GCGCTAAGTA TCTCAACCAA TCGCTCGTCA CGTTCGGATT CCCTGCTTCG CTCGATCTCT
TCGCAAATGA CCCCGTTTCC ATTGCGAGGA CTTGCAATTG CATTTACTTT CTGCTCCAAC AGAGACAGCG CGATGTCGAA
TTTAGAGAGT CTGCTAATGA TCAAAGACAA CGACTGTTGT CTGACATCTC GAGGTTAGAA GCCAAAGTGG AGAGGCTCGA
AGGTCAACTA CAAGTCAAAG ACAGGGAGAT AGCGACTATT ACTAGAACAG AAGCTAAAAA CACGGCAGCT TTGAAGGCTC
AAATTGAGAA GCTGCAGCAG GAGAGGGATG AGTTTCAGAG AATGGTTATT GGTAATCAGC AAGTAAAGAC TCAACAACTG
CATGAGATGA AGAAGAAGGA AAAGGAATAC ATAAAATTGC AGGAGAGACT AAACCAAGTT TTAATGGAGA AGAAGAAAGA
GTCTAGGTCG GGCATGGAGA TAATGAATTT GCTTCAGAAG GAAGGGAGGC AACGAGGAAC ATGGAATGGG AAGAAAGCTG
ACAATGATTT TTACAAGAAG ATTGTGGATG CTTATGAGGC AAAAAATCAA GAACTGATGG CAGAGAATAC TGATTTAAGA
GCATTGTTGA GATCAATGCA GGTGGATATG CGTGATTTCT TAAATGCGCC TAACGGACTA CCTAAGCAGT CTCTCACAGG
CAATGAAAGA GTTGAAAGTG ATCCTTCACA ATCTCCATTG GTTGGGAAAA TGGACGTATT TGACCTACCT TTTCATATGG
CCAGAGATCA AATAGAAGAA AGCCTTCGTA ACAAAATGGC TTCTATAAAG GAGCGCATGG TTCAATTGCA AGATGCTCAA
AAGGGAGCAG AAGTTACTTC GGAGGCTACT GAGAGGGAAC TTGAACTCGA AGCTCAGCTT GTTGAAGCAA GAAGCATCAT
ACAGGAGCAG GCATCAATTA TGTCTAAACA TCTTTCAAAA TCTGATAGGC CAAGGGATTC TATCATTCCA GCACCGGCTG
AGGTATGTAT TTATTATGTC TATGTTGTTT CGGCCAAGTA TTTGTTACGT CCATTTAGCA GTCAAACTCG TTTCATATAA

>Vigan.01G479100.01
MPPTEGDFDL RHPSQSAFAA GEYTFADVEN LEHCAKYLNQ SLVTFGFPAS LDLFANDPVS IARTCNCIYF LLQQRQRDVE
FRESANDQRQ RLLSDISRLE AKVERLEGQL QVKDREIATI TRTEAKNTAA LKAQIEKLQQ ERDEFQRMVI GNQQVKTQQL
HEMKKKEKEY IKLQERLNQV LMEKKKESRS GMEIMNLLQK EGRQRGTWNG KKADNDFYKK IVDAYEAKNQ ELMAENTDLR
ALLRSMQVDM RDFLNAPNGL PKQSLTGNER VESDPSQSPL VGKMDVFDLP FHMARDQIEE SLRNKMASIK ERMVQLQDAQ
KGAEVTSEAT ERELELEAQL VEARSIIQEQ ASIMSKHLSK SDRPRDSIIP APAEVCIYYV YVVSAKYLLR PFSSQTRFI*