VIGGS:Variant information

Chr01:60792193 - 60797797

Position	Ref.	Alt.	Depth	Score	Freq. Of Alt.	Effect	Species
60792380	C	A	47	1888.77	1.00	UTR_5_PRIME(\|293\|\|None\|Vigan.01G479100.01)	Vigna nepalensis
60793459	T	G	59	2354.77	1.00	INTRON(\|\|\|None\|Vigan.01G479100.01)	Vigna nepalensis
60793563	A	G	44	1774.77	1.00	INTRON(\|\|\|None\|Vigan.01G479100.01)	Vigna nepalensis
60794056	G	A	66	2581.77	1.00	INTRON(\|\|\|None\|Vigan.01G479100.01), SPLICE_SITE_REGION(\|\|\|None\|Vigan.01G479100.01)	Vigna nepalensis
60794342	T	C	54	2264.77	1.00	SYNONYMOUS_CODING(SILENT\|gaT/gaC\|D238\|None\|Vigan.01G479100.01)	Vigna nepalensis
60794385	G	A	46	1818.77	1.00	INTRON(\|\|\|None\|Vigan.01G479100.01)	Vigna nepalensis
60794767	A	T	69	2763.77	1.00	INTRON(\|\|\|None\|Vigan.01G479100.01)	Vigna nepalensis
60795572	C	T	53	1945.77	1.00	INTRON(\|\|\|None\|Vigan.01G479100.01)	Vigna nepalensis
60797139	C	G	43	1700.77	1.00	DOWNSTREAM(\|4205\|\|None\|Vigan.01G479200.01), UTR_3_PRIME(\|320\|\|None\|Vigan.01G479100.01)	Vigna nepalensis
60797171	C	T	50	1993.77	1.00	DOWNSTREAM(\|4173\|\|None\|Vigan.01G479200.01), UTR_3_PRIME(\|352\|\|None\|Vigan.01G479100.01)	Vigna nepalensis
60797422	A	T	67	2740.77	1.00	DOWNSTREAM(\|3922\|\|None\|Vigan.01G479200.01), UTR_3_PRIME(\|603\|\|None\|Vigan.01G479100.01)	Vigna nepalensis

Position	Ref.	Alt.	Depth	Score	Freq. Of Alt.	Effect	Species
60795821	TG	T	59	2162.73	1.00	INTRON(\|\|\|None\|Vigan.01G479100.01)	Vigna nepalensis
60796381	CT	C	40	1105.73	1.00	DOWNSTREAM(\|4962\|\|None\|Vigan.01G479200.01), INTRON(\|\|\|None\|Vigan.01G479100.01)	Vigna nepalensis
60796749	TTTA	T	37	1606.73	1.00	CODON_DELETION(\|atttat/att\|IY377I\|None\|Vigan.01G479100.01), DOWNSTREAM(\|4594\|\|None\|Vigan.01G479200.01)	Vigna nepalensis