GBrowse Details

Vigan.01G471800.01

Basic Information:
Name: Vigan.01G471800.01
Multiple alignment
Variant Information
Position: Chr01:60151230..60157760 (+ strand)
Length: 6531
Functional Information:
Description: Similar to tRNA (adenine(37)-N6)-methyltransferase-like isoform X1. [XP_004507807.1, Cicer arietinum]
InterPro: Uncharacterised domain UPF0066 (IPR001378)
TsaA-like domain (IPR023370)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:10.54,14.86,3.31,2.86,4.36,3.59,3.53,4.61
Arabidopsis thaliana homolog: AT4G28020.1
Automatic updates:
Name: NM_001255673 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100812211 (LOC100812211), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:60151230..60151291 (+ strand)
Length: 62
Type: five_prime_UTR
Position: Chr01:60151292..60151370 (+ strand)
Length: 79
Type: CDS
Position: Chr01:60151445..60151566 (+ strand)
Length: 122
Type: CDS
Position: Chr01:60151640..60151942 (+ strand)
Length: 303
Type: CDS
Position: Chr01:60152345..60152437 (+ strand)
Length: 93
Type: CDS
Position: Chr01:60153191..60153250 (+ strand)
Length: 60
Type: CDS
Position: Chr01:60153393..60153467 (+ strand)
Length: 75
Type: CDS
Position: Chr01:60153811..60153891 (+ strand)
Length: 81
Type: CDS
Position: Chr01:60157301..60157669 (+ strand)
Length: 369
Type: CDS
Position: Chr01:60157670..60157760 (+ strand)
Length: 91
Type: three_prime_UTR

>Vigan.01G471800.01 class=Sequence position=Chr01:60151230..60157760 (+ strand)
TATAACTACA GATGTAGGAG TAGGAATGAA GCGATTTTAC TTCGAGCCGA AGCTGGTTAG TGATGCGCGG CAACATTTCA
GAAACAAAAT GGTTGACAGT GACCGCCATA ACCTTCACAC TCACAGCCAT TTCCATCTCT GGTACATAGA AGTTATTTCA
ATTCCGATTG TAATCACTCA CTCACCATTC TCATACTTGT CACTGAATTT TGCAGCCTAC GCATTAAAGA GAAAATGGAA
CCATATGAGC TCCAAGATCG AGGAGCTCGA GGCATCTCTG AAATCCTGCT CTGAGAAATG TGCCTCCGAA AGGCAAGGGC
GAATCAGGGC TCAACAGGTC TCCATCACTT CTCTCTCCCA ACCAACCACT TTATGCGTCC TAATTCCGTT TCCGATTCCG
GTATTTGCAG GCTTTGAGAG AAGAAGTTAC AAAGTCGCAA CCTAAGTCTG AAAACCTAAA CCTCACCTGT TATCCCATGA
TGCCAATCGG TACCGTCCAC TCCTGCTTCT CCACCAGGAA CGGGACGCCG AGGCAACCGT TACTCGTGCC ACTTGCTAGG
GCGTGTTTGG TTTTTAACAC TACTCGCGTT CCACCGGCGT CGCTCGAGGG TTTGGAGGAA TATTCTCATT GTTGGATTCT
GTATGTTTTT CACTTAAATA CGGATATTGA TAAGCTGTGG AAGCATCCGT CTAAATCAGG GTTCAAGGCC AAGGTGCGTG
CCTCTGGTTT CAACTGATAA TCTGGACCCT TTTCACATGA TTTTTTTGCT TAGTTTCTTA TAACTAATTC TAAGTGTTTA
TTATATACTA AAGAGGATTT AATATTCTTA GTCATTGAAG TTAAATCAAA AGAAAAAATG AATTGAAATT CTGACGTCCA
AATGTATTTT TAATCCTTGT ACAAGTTAGA TTAGACAGTT TCTATGAGAC TTAAGTTTAT GAGTCCAAAT TAGCATACTT
GAGAAGATTA ATTCATTTTA TGTTTTTATT TTCTTCTTTT ATCAATACTT AAAAAGAAGT TTATTCAAAC ATAATCTTAA
TCTACATTGT CATAGCTATG CCATGTTAAT TTTTGTTTTA TAGAAGTCTT TTCATATGGA TCGGTGGATG AACAGGTGAG
GGTTCCGAGA CTGAAGGGTG GAAGAAAGGG AGTGTTTGCC ACACGATCCC CACACCGTCC ATGCCCCATC GGACTCACAG
TTGCAAAGGT AAGGACACTT GTTGGTTTTG TGACTCTGAG ATGATTCTTC TCACGAATGA CACTTTTAAT AATCGATCTG
TCTCTGATTT AATGCATAAT GTTGAATATT GAAGACCAGC AAACAAGTCT CTCAGAAAAA ATCACTTTAT CCTTTTTTGT
CTTTAGATTG CTTTGTGATT CCTCTTAGCA TTACTAAATT GTTGCAATGC AAGCCTACGG TAAATTCATT CACAAGGCAG
TATCGGATTT CAGACCGTTG TTCCTGGGCT CATTGCATAT GGTGGTTATT CCCCTTCGCC CCAAGTATGA ATTCAGTGTG
GTGTGTTGTT AAGAAACATA CTGTACTGTT TTACATTTTA AAAATGCACG TGACAAGTAT GTCCACAAAA AAATTGCATT
GTTTTGAGGC AGGTTGGTGT CAAGCAACAA TAATGATTTG TGTAATAAAC ATGTGACTGT CACATGTCAT TTGTCTTAAG
AGTGGATGAG AAGAAGTATG AATCAGTGGC GTAACCAAGG AACTACTGAT CATGGAATAA TAGCGACATA TTGATAGGAA
ATTGAATTTC ACCCTTATTA TTATGTGATT AGGAAAATCT TAGTTCTTCA GTGATTACTT CTCATGCAGG GTCTCATTAA
TGTATTTTTT TTTTCATGTT GTCTCTGTTC CCTTTGTCAT CCACTCCCTA GAATTTCAAT TTTTGTATTC AAATAAACAA
AAAGGACGGG CGTAGTTTGT AACTTTAATT TTATACTGTA GGTAGAGGCT GTACAGGGAA ATATGGTTTT GCTCTCGGGT
GTGGATCTGG TTGATGGAAC TGTAAGCCTC CATTTTCAGT CTTTGCTTTT TATGCAAACT TTAGTGAAAT TCTGTGCCAC
TCGTGATATG GTATTTGGTT AACTGTGAAT TTTATGCTTT TATGTAAATG CATAATCATG TTGCTTCCGA ATCTCATCAA
CAGCCAGTGC TAGATCTCAA GCCTTACATA CCATATTGTG ACAGCATCCG AGAAGCTACA GTGCCAAATT GGTTGACAGT
AATGCCCCGT TTTCCTTTTA GCTATATCTT TCGCTGCTTA TATTGGTTTA TTTTTTCTAA TTAATGTATA ACATATTTTA
ACAATTTGAT CTTTGAATTA CTGTAAGTAA CTTTAAACAA TTGTTAGCTG GATATCAAAT TTAATCTTCA CACGTGTGAA
AAATGATATA TAATAAATCA TCACTACCTT CTACTACGCA ATGAGACTCT TGTACTCTTG TATTATTATT ATTTGAAAGC
TCAGCAGTGA AATTTACTAG AGCAATATTA CATTTTCTCA CATCTCTCTC TACAGAAGTT TAATGAATTA CCTCTTCTTA
AAAAAAATTG TATTTCTTCA GGATGATAAC TTGCTTTCTG TAGCTTCTAT TAGCTTTTCG GAGGACTTCA CTTCAGCTCT
CGAAAATTGC TGGATAGTGG CGGTGAGTTG TTAACTGCTT AATGCATCAT GTCCACTCTT TATATTTGTT TTTATTTAAG
AAGAATAGAT TCACTTTTCC AAATGATTGC AAAGCAGCTC CTTGTAGCTT TAACATTTTT CATGGAAGAA AATTGATATT
TTAGCAACTC TTATGAAATT ACAACCTTGT TATAATAATA ATAATGATAT GAACATATAA GTTAATAAAG GAAAATTAGT
AAAATATTAT TTGTTGTTTT TATTCAACAA TAACAAGAAA AAAACACAAG AACAATAATG AAAGAAAGTA AATGTATTAT
AACATAAGGT TCTATATAAA AGTATGTTCT CAATGCAACA TATACCGCAT AAACATAGAA TTCTCTATTT ATAGAACTAA
GGAAACAGAA TGACCAAAAA CCACAAAGAC AATTAAGACA AAACACCATC TAATTCATGT GGTAGATGGT ACATGGTCTA
ACTAATATGA ACACTATTAG ACGCACTCTA GTAGACAATC TTTTGTACCA TTCATGATTA TCATACAAAC TCTTTAAACT
GCACTCATAC AAACTCCAAA CATTCTCAAT TCTAAGCTCT ATAAGTTTGG TTACATGCTA ATTACCAATC ATGGAGTGCC
ACTTCTTAAA TCATTGAAAA GTTCTAGTCT TTCTTTTCAA GATATAAATT TACACCCTCT GCGAGTAATC ATCAATGGTA
GTGAGGAAAT AAGACCTACT GTGAGTTTGG GCTCTTGCTG GACCCCATAG GTTTACATGA GCATACTCAA ACGGCTCAAC
TGGTCTACTG GATATATGTT TACTAGTCCC ACACTTCAAT CTGAGACTTT CCAAAGTATG CATTGATCAC AAAACTCCAA
CTCTTTCATT CTATCGCCTC CTAGCTATTT GCCCAACTCC GTTAAACCTC TATCACTAAT GTGCCCCAAT CTTGCCACAG
TTTTGTCTTA TCTTGCATTG TCTGCCTAGC TACAAACACA TGTGTTATCA CTATTCTAGT ATATAAAGAC TATTCTTTTT
TCACTTCCTT AGCAACTATA GAGGCGCCTT TTAAAATCTT TATATTACCT TGTTCAATCT TGGTTAACAA ACCCATAAGG
TCAAACATAC TAATCAACAA AAGATTTCTC TTGAGCTCTT GAACACATCC TCACATCTTG CAATATCATT TATTGGTTGT
CAATCATCTT CAATTTGATT GATTCCATGC CTTGCACCTT ATAGGCTTCA TTGTTCGCTA GAAGAACTAC ACCTCTTTCT
TTCAGTTCTA AGGTCTCAAA GAACTCCTTC ACTGAACATA TGTGATAAGT GCAATCTGAG TTCATAATTC AACTTCTTTG
TGTAATTGAC ACTAATGCCA CTAACACTCT GGCATATTCT AGCTATTAGA CACTACTACA ACATTAAAAT GTTCTCTTTT
GTAATGACAG TTTCTGCCCT TCTCATTCTT TTCTTTCTTT GGACTGTCTG TCTTGTAGTG ACATCTCTTG TGACAATTAT
AACACTCAGG CCTTTTATCT GCCCTATCAT CGGATGAATG CTTTGACTTA TTCCCTTTCA CCTCCCTTGT TTTCTTTCTC
TTTGACTTCA AGACATTCAA ACTCTTCAAG ACATTATAGT TTGCCTTATA CTCTTGAAGT TTTTGTCTCC AGAGTGAAGT
CTTATCATTG TCTTTGAGCT TCACTTCAAT GTTATCCAGA TAGTCAGAAT CTTGTTAAAA TCTTCTAGCC ACTCCACCAT
CATTCTTGAT TTAGTCATCT TGAATGAATA CAATTGTTAC TTCAGATAGA GTCTACGTAC CAAAGAATTT GTCATATACA
ATGACTAAAG TTTCATACAC ATTGATGTAG CAACTCTCTC CTTCATGACT TCCTTGGATG TCTTATTCCC AAGACACAAA
GTTATGGTGT TTTTGACTTT GTTGATTATG TCAATCTTCT CTTTTTGAGA CAATGACAGT AACATGTTCA CCTCACCTTT
ATCTCATCAA CAATTTATTG TTGTATCAAA ATAACTTCCA TCTTAATCTT CCATAATCTG AAATCATTGT AAAAAAAAAC
TTGTAAATAG CAAAGTTGGT GACCATGTCT TCAAATCTTG CACTTCTTGA TTTTGTACCT CTTGTTCCTC ACAGACGGTG
TGGATTGTTG GGTTCATTCA AGAATAATAA GAAAAAACAC AAGAACAAGA AATAAAACAA TTGTATTATA ACAGAAGGTT
TTATACACAA AGTATGTTCT CACTATAACA TATATTGCAT ATATATAATG TTCTCTATAT AGGACTAAGA AAACGAAATA
ACAGAAAACT GCAAAGATAG TCAATACAAA ATGCCATCTA ATACAGGTGG TGGATAGTCT AATTAATCTT AAAACTACCG
GACATTCTTT AGCAGACAAA TCTTTTGTAT TCTTCACCAG ACGATCATGA TTTAGAGCTA ATACATCACA TTATTATATA
TACGTCACAT TTGCAATTGT TTGATAGAGT TTGCCAATAT ATATCACTAT TCTTCACGTA AAATACGTTT GTTAGCTAAT
CTCAATGCAA AACCAAACAT ATTGAATAGA AATGGTAAAT TAAGTGGCTC AATTGGAAAA AAAGAAAATC AGGTGCTGAA
CCTCAAGTGA CCTTGCTTGA TATTGTAATG ACAAAACTTA GCAAAGGCTT AATTAATTAT TTATTTGAAA TTATTTTTGT
TAGCCATAAT GGATGCACCC AATCAGTATG TAATTCAACC TTTCATGTTT TCAACTTTCT TCAGGGGTAC ATATTTTAAA
TTAAAGGGAA ATGACTCTGA TTACCACAAT CATGTCTTGG ATTTTGATTA TTCTCACTAT TTTATTTTTA ACATTGTACT
TGATTATTTA GCATCGGTTT TACTTGCTAA TATTCCCGTT TTATACATTA TTTTAGCTTA TTATAAAGTG TTTTTAGCAT
TTTTTTGACA TTTGGTTCAA AATTATCTAC AACCATTTTT TAGTATTTGT TTTTACTTAG CTTATATTGC AAAATGAGGA
TGACCATGGT GGTGCAGCAG TAAGGCCGCT ACTACCTTGT CACTTAGAAT TCACGGGTTC AGACCCAGGA ACAAGCTCTC
TCCATTTGCG TCCTTTCCAA ACCCACTTGT TGGTATTAGG GAGTCTCATG CATTGTGTCA CATTTTTCAC CTTAAATTAT
AAAACGTCGG AGAGAAAGTC CCCGGACCCT TGTTTGAATA GCTGGTCAAT CGCAGTAAAG CCCCTTAATT AAAGGAGAGA
AAGACCTAAA ACAACTTGAA GTGAAATTAT TAAAAAATAT TCAGATTTTG CCTCCCTGAA GTTTTGGTTA CTGCTTTATG
TTGTTATTGC TTAAGTCACA TTTTTAATCT TGTTCTTGCT CCGATGTAAT TCATACGGGT TTATGATTCA GGAAAAGAAG
TCATTGTATG CATCACCAGG TGAGTTCCAA AGCTTGATAA AGCAGGTTCT TTCATGGGAT ATTCGGTCAT TGAGTCAACG
CAATCGGCCA CATGATGCAT TACTTAAGAA TGAAAACGAT GAACTATTGG GTAATGCTTC TGATGTAGAT GACCACGAAA
ATGAAACAGT AGTCCATGAA AGAGAGCAGA ATGCTATATA TTCCAGTAAA ATCATTTATC ACCTGATTTT GGAGGGACTT
GATGTCTCTT ACAGAATTGA TCATGTCGGT CATGTCATAG TAGATAATGT ATCACATGCT GTGCAGGATA ATAAGCGTAG
TTTCTTTAAT TACTTGGCAT GGAAAGGCAA GATGCAATGA TTTCTTTTAT TCTACCCGAT TACTTGTTAA GCTATTTTAA
TTAATATTTT TCTTTTTCAA AAAAATGTTT TTGCCCTTTT GTTACTAGTA A

>Vigan.01G471800.01
TATAACTACA GATGTAGGAG TAGGAATGAA GCGATTTTAC TTCGAGCCGA AGCTGGTTAG TGATGCGCGG CAACATTTCA
GAAACAAAAT GGTTGACAGT GACCGCCATA ACCTTCACAC TCACAGCCAT TTCCATCTCT GCCTACGCAT TAAAGAGAAA
ATGGAACCAT ATGAGCTCCA AGATCGAGGA GCTCGAGGCA TCTCTGAAAT CCTGCTCTGA GAAATGTGCC TCCGAAAGGC
AAGGGCGAAT CAGGGCTCAA CAGGCTTTGA GAGAAGAAGT TACAAAGTCG CAACCTAAGT CTGAAAACCT AAACCTCACC
TGTTATCCCA TGATGCCAAT CGGTACCGTC CACTCCTGCT TCTCCACCAG GAACGGGACG CCGAGGCAAC CGTTACTCGT
GCCACTTGCT AGGGCGTGTT TGGTTTTTAA CACTACTCGC GTTCCACCGG CGTCGCTCGA GGGTTTGGAG GAATATTCTC
ATTGTTGGAT TCTGTATGTT TTTCACTTAA ATACGGATAT TGATAAGCTG TGGAAGCATC CGTCTAAATC AGGGTTCAAG
GCCAAGGTGA GGGTTCCGAG ACTGAAGGGT GGAAGAAAGG GAGTGTTTGC CACACGATCC CCACACCGTC CATGCCCCAT
CGGACTCACA GTTGCAAAGG TAGAGGCTGT ACAGGGAAAT ATGGTTTTGC TCTCGGGTGT GGATCTGGTT GATGGAACTC
CAGTGCTAGA TCTCAAGCCT TACATACCAT ATTGTGACAG CATCCGAGAA GCTACAGTGC CAAATTGGTT GACAGATGAT
AACTTGCTTT CTGTAGCTTC TATTAGCTTT TCGGAGGACT TCACTTCAGC TCTCGAAAAT TGCTGGATAG TGGCGGAAAA
GAAGTCATTG TATGCATCAC CAGGTGAGTT CCAAAGCTTG ATAAAGCAGG TTCTTTCATG GGATATTCGG TCATTGAGTC
AACGCAATCG GCCACATGAT GCATTACTTA AGAATGAAAA CGATGAACTA TTGGGTAATG CTTCTGATGT AGATGACCAC
GAAAATGAAA CAGTAGTCCA TGAAAGAGAG CAGAATGCTA TATATTCCAG TAAAATCATT TATCACCTGA TTTTGGAGGG
ACTTGATGTC TCTTACAGAA TTGATCATGT CGGTCATGTC ATAGTAGATA ATGTATCACA TGCTGTGCAG GATAATAAGC
GTAGTTTCTT TAATTACTTG GCATGGAAAG GCAAGATGCA ATGATTTCTT TTATTCTACC CGATTACTTG TTAAGCTATT
TTAATTAATA TTTTTCTTTT TCAAAAAAAT GTTTTTGCCC TTTTGTTACT AGTAA

>Vigan.01G471800.01
ATGCGCGGCA ACATTTCAGA AACAAAATGG TTGACAGTGA CCGCCATAAC CTTCACACTC ACAGCCATTT CCATCTCTGC
CTACGCATTA AAGAGAAAAT GGAACCATAT GAGCTCCAAG ATCGAGGAGC TCGAGGCATC TCTGAAATCC TGCTCTGAGA
AATGTGCCTC CGAAAGGCAA GGGCGAATCA GGGCTCAACA GGCTTTGAGA GAAGAAGTTA CAAAGTCGCA ACCTAAGTCT
GAAAACCTAA ACCTCACCTG TTATCCCATG ATGCCAATCG GTACCGTCCA CTCCTGCTTC TCCACCAGGA ACGGGACGCC
GAGGCAACCG TTACTCGTGC CACTTGCTAG GGCGTGTTTG GTTTTTAACA CTACTCGCGT TCCACCGGCG TCGCTCGAGG
GTTTGGAGGA ATATTCTCAT TGTTGGATTC TGTATGTTTT TCACTTAAAT ACGGATATTG ATAAGCTGTG GAAGCATCCG
TCTAAATCAG GGTTCAAGGC CAAGGTGAGG GTTCCGAGAC TGAAGGGTGG AAGAAAGGGA GTGTTTGCCA CACGATCCCC
ACACCGTCCA TGCCCCATCG GACTCACAGT TGCAAAGGTA GAGGCTGTAC AGGGAAATAT GGTTTTGCTC TCGGGTGTGG
ATCTGGTTGA TGGAACTCCA GTGCTAGATC TCAAGCCTTA CATACCATAT TGTGACAGCA TCCGAGAAGC TACAGTGCCA
AATTGGTTGA CAGATGATAA CTTGCTTTCT GTAGCTTCTA TTAGCTTTTC GGAGGACTTC ACTTCAGCTC TCGAAAATTG
CTGGATAGTG GCGGAAAAGA AGTCATTGTA TGCATCACCA GGTGAGTTCC AAAGCTTGAT AAAGCAGGTT CTTTCATGGG
ATATTCGGTC ATTGAGTCAA CGCAATCGGC CACATGATGC ATTACTTAAG AATGAAAACG ATGAACTATT GGGTAATGCT
TCTGATGTAG ATGACCACGA AAATGAAACA GTAGTCCATG AAAGAGAGCA GAATGCTATA TATTCCAGTA AAATCATTTA
TCACCTGATT TTGGAGGGAC TTGATGTCTC TTACAGAATT GATCATGTCG GTCATGTCAT AGTAGATAAT GTATCACATG
CTGTGCAGGA TAATAAGCGT AGTTTCTTTA ATTACTTGGC ATGGAAAGGC AAGATGCAAT GA

>Vigan.01G471800.01
MRGNISETKW LTVTAITFTL TAISISAYAL KRKWNHMSSK IEELEASLKS CSEKCASERQ GRIRAQQALR EEVTKSQPKS
ENLNLTCYPM MPIGTVHSCF STRNGTPRQP LLVPLARACL VFNTTRVPPA SLEGLEEYSH CWILYVFHLN TDIDKLWKHP
SKSGFKAKVR VPRLKGGRKG VFATRSPHRP CPIGLTVAKV EAVQGNMVLL SGVDLVDGTP VLDLKPYIPY CDSIREATVP
NWLTDDNLLS VASISFSEDF TSALENCWIV AEKKSLYASP GEFQSLIKQV LSWDIRSLSQ RNRPHDALLK NENDELLGNA
SDVDDHENET VVHEREQNAI YSSKIIYHLI LEGLDVSYRI DHVGHVIVDN VSHAVQDNKR SFFNYLAWKG KMQ*