Variant information

Chr01:60151230 - 60157760

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 [SNPs] [Indels]

SNPs

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
60151245AG421836.771.00UPSTREAM(|1041||None|Vigan.01G471700.01), UTR_5_PRIME(|47||None|Vigan.01G471800.01)Vigna nepalensis
60151261CT431876.771.00UPSTREAM(|1057||None|Vigan.01G471700.01), UTR_5_PRIME(|31||None|Vigan.01G471800.01)Vigna nepalensis
60151696CT471810.771.00SYNONYMOUS_CODING(SILENT|acC/acT|T86|None|Vigan.01G471800.01), UPSTREAM(|1492||None|Vigan.01G471700.01)Vigna nepalensis
60152085AG612372.771.00INTRON(|||None|Vigan.01G471800.01), UPSTREAM(|1881||None|Vigan.01G471700.01)Vigna nepalensis
60152279TC652570.771.00INTRON(|||None|Vigan.01G471800.01), UPSTREAM(|2075||None|Vigan.01G471700.01)Vigna nepalensis
60152341AG522051.771.00INTRON(|||None|Vigan.01G471800.01), SPLICE_SITE_REGION(|||None|Vigan.01G471800.01), UPSTREAM(|2137||None|Vigan.01G471700.01)Vigna nepalensis
60152408CG522058.771.00NON_SYNONYMOUS_CODING(MISSENSE|Cca/Gca|P190A|None|Vigan.01G471800.01), UPSTREAM(|2204||None|Vigan.01G471700.01)Vigna nepalensis
60152524CT602738.771.00INTRON(|||None|Vigan.01G471800.01), UPSTREAM(|2320||None|Vigan.01G471700.01)Vigna nepalensis
60152661AC441932.771.00INTRON(|||None|Vigan.01G471800.01), UPSTREAM(|2457||None|Vigan.01G471700.01)Vigna nepalensis
60152666GA411897.771.00INTRON(|||None|Vigan.01G471800.01), UPSTREAM(|2462||None|Vigan.01G471700.01)Vigna nepalensis
60152860TC612618.771.00INTRON(|||None|Vigan.01G471800.01), UPSTREAM(|2656||None|Vigan.01G471700.01)Vigna nepalensis
60152878AG572519.771.00INTRON(|||None|Vigan.01G471800.01), UPSTREAM(|2674||None|Vigan.01G471700.01)Vigna nepalensis
60152945CA451903.771.00INTRON(|||None|Vigan.01G471800.01), UPSTREAM(|2741||None|Vigan.01G471700.01)Vigna nepalensis
60153050CA532136.771.00INTRON(|||None|Vigan.01G471800.01), UPSTREAM(|2846||None|Vigan.01G471700.01)Vigna nepalensis
60153417AC481771.771.00NON_SYNONYMOUS_CODING(MISSENSE|Ata/Cta|I228L|None|Vigan.01G471800.01), UPSTREAM(|3213||None|Vigan.01G471700.01)Vigna nepalensis
60153660CT602376.771.00INTRON(|||None|Vigan.01G471800.01), UPSTREAM(|3456||None|Vigan.01G471700.01)Vigna nepalensis
60154181AT592275.771.00INTRON(|||None|Vigan.01G471800.01), UPSTREAM(|3977||None|Vigan.01G471700.01)Vigna nepalensis
60154274AG522026.771.00INTRON(|||None|Vigan.01G471800.01), UPSTREAM(|4070||None|Vigan.01G471700.01)Vigna nepalensis
60154344GA632602.771.00INTRON(|||None|Vigan.01G471800.01), UPSTREAM(|4140||None|Vigan.01G471700.01)Vigna nepalensis
60154705TC501974.771.00INTRON(|||None|Vigan.01G471800.01), UPSTREAM(|4501||None|Vigan.01G471700.01)Vigna nepalensis
60154807AG572336.771.00INTRON(|||None|Vigan.01G471800.01), UPSTREAM(|4603||None|Vigan.01G471700.01)Vigna nepalensis
60154887AT552197.771.00INTRON(|||None|Vigan.01G471800.01), UPSTREAM(|4683||None|Vigan.01G471700.01)Vigna nepalensis
60154935GT683063.771.00INTRON(|||None|Vigan.01G471800.01), UPSTREAM(|4731||None|Vigan.01G471700.01)Vigna nepalensis
60154936CT683063.771.00INTRON(|||None|Vigan.01G471800.01), UPSTREAM(|4732||None|Vigan.01G471700.01)Vigna nepalensis
60155204TC572319.771.00INTRON(|||None|Vigan.01G471800.01), UPSTREAM(|5000||None|Vigan.01G471700.01)Vigna nepalensis
60155601TG662561.771.00INTRON(|||None|Vigan.01G471800.01)Vigna nepalensis
60155757AG602338.771.00INTRON(|||None|Vigan.01G471800.01)Vigna nepalensis
60155918TC502041.771.00INTRON(|||None|Vigan.01G471800.01)Vigna nepalensis
60156217AG562156.771.00INTRON(|||None|Vigan.01G471800.01)Vigna nepalensis
60156282CT582353.771.00INTRON(|||None|Vigan.01G471800.01)Vigna nepalensis
60156648CA562195.771.00INTRON(|||None|Vigan.01G471800.01)Vigna nepalensis
60156751GA622490.771.00INTRON(|||None|Vigan.01G471800.01)Vigna nepalensis
60156809AC602288.771.00INTRON(|||None|Vigan.01G471800.01)Vigna nepalensis
60156912AG481838.771.00INTRON(|||None|Vigan.01G471800.01)Vigna nepalensis
60157039GC441822.771.00INTRON(|||None|Vigan.01G471800.01)Vigna nepalensis
60157244GC692656.771.00INTRON(|||None|Vigan.01G471800.01)Vigna nepalensis
60157427GA612411.771.00NON_SYNONYMOUS_CODING(MISSENSE|Gat/Aat|D314N|None|Vigan.01G471800.01)Vigna nepalensis
60157478GT602530.771.00NON_SYNONYMOUS_CODING(MISSENSE|Gta/Tta|V331L|None|Vigan.01G471800.01)Vigna nepalensis
60157508TG582344.771.00NON_SYNONYMOUS_CODING(MISSENSE|Tat/Gat|Y341D|None|Vigan.01G471800.01)Vigna nepalensis
60157605AC712780.771.00NON_SYNONYMOUS_CODING(MISSENSE|cAt/cCt|H373P|None|Vigan.01G471800.01)Vigna nepalensis
60157656GA722819.771.00NON_SYNONYMOUS_CODING(MISSENSE|gGc/gAc|G390D|None|Vigan.01G471800.01)Vigna nepalensis
60157754CA461920.771.00UTR_3_PRIME(|85||None|Vigan.01G471800.01)Vigna nepalensis

Indels

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
60152219TTTCT512257.731.00INTRON(|||None|Vigan.01G471800.01), UPSTREAM(|2016||None|Vigan.01G471700.01)Vigna nepalensis
60152512TCTGATTTAAT612730.731.00INTRON(|||None|Vigan.01G471800.01), UPSTREAM(|2309||None|Vigan.01G471700.01)Vigna nepalensis
60152752GTGTG482057.731.00INTRON(|||None|Vigan.01G471800.01), UPSTREAM(|2549||None|Vigan.01G471700.01)Vigna nepalensis
60153073AAT401134.731.00INTRON(|||None|Vigan.01G471800.01), UPSTREAM(|2870||None|Vigan.01G471700.01)Vigna nepalensis
60153519ATA541682.731.00INTRON(|||None|Vigan.01G471800.01), UPSTREAM(|3316||None|Vigan.01G471700.01)Vigna nepalensis
60155019CTTC703017.731.00INTRON(|||None|Vigan.01G471800.01), UPSTREAM(|4816||None|Vigan.01G471700.01)Vigna nepalensis
60155939TTAA461675.731.00INTRON(|||None|Vigan.01G471800.01)Vigna nepalensis