GBrowse Details

Vigan.01G467000.01

Basic Information:
Name: Vigan.01G467000.01
Multiple alignment
Variant Information
Position: Chr01:59651090..59653332 (- strand)
Length: 2243
Functional Information:
Description: Similar to MYB transcription factor MYB173. [V5N8N7, Phaseolus vulgaris]
GO: Molecular Function: DNA binding (GO:0003677)
Molecular Function: chromatin binding (GO:0003682)
InterPro: SANT/Myb domain (IPR001005)
Myb domain, plants (IPR006447)
Homeodomain-like (IPR009057)
Myb domain (IPR017930)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:236.01,86.38,104.61,190.73,43.00,153.93,126.20,66.79
Arabidopsis thaliana homolog: AT1G19000.1
Automatic updates:
Name: NM_001249119 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max MYB transcription factor MYB176 (MYB176), mRNA.
PubMed ID: 28586359 NCBI(pubmed)
28074922 NCBI(pubmed)
22836494 NCBI(pubmed)
22404168 NCBI(pubmed)
20345602 NCBI(pubmed)
Status: Known Variant
Name: NM_001251711 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max MYB transcription factor MYB173 (MYB175), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:59651090..59651662 (- strand)
Length: 573
Type: three_prime_UTR
Position: Chr01:59651663..59652097 (- strand)
Length: 435
Type: CDS
Position: Chr01:59652604..59652812 (- strand)
Length: 209
Type: CDS
Position: Chr01:59652927..59653164 (- strand)
Length: 238
Type: CDS
Position: Chr01:59653165..59653332 (- strand)
Length: 168
Type: five_prime_UTR

>Vigan.01G467000.01 class=Sequence position=Chr01:59651090..59653332 (- strand)
TGAAACTCTG TTGTATTAGA CACCACGCAC TCACCTTTGA TCCTAACTTC TCTCTCCTTC ATATACTTCG TCTTCTCTCT
CCTTTCACCA ATTCACAAAA CTCCCTTGTG TGGTCTCTGA TTCTATCTGA ATCAAACGAA CTAACCGAGA TCACCGTCCG
ATCCGATCAT GTCTCGTGCC TGCGCTGCTA CAGACTCGGT TGCCTCCGGC GAGATCATGC TGTTTGGGGT TCGAGTGGTA
GTCGATTCCA TGAGAAAAAG CGTCAGCATG AACAACCTTT CACAGTACGA GCATAGGCAC GACGCTAACA ACAACAATAA
AGATGTTCTC GCAGTTGGTT ATGCCTCAGC CGATGATGCC GTTCCTCATA ACACTGGTCG CCACCGTGAG CGGGAGCGCA
AGCGAGGTTC CATCTATTTA TTCCATCAAA TTGTCATTTT TTAATTTTAA TATAACTTAT CTCGTCTGAT CGCATAACCG
GGGATTCTGA TGGATTAATT GAAATTGTGT TGTTGATTAG GAGTTCCGTG GACAGAAGAA GAGCACAAAC TGTTTTTGGT
TGGGTTGCAG AAGGTAGGGA AAGGTGATTG GAGAGGAATC TCCAAAAACT ATGTGAAAAC GCGAACTCCG ACGCAGGTTG
CGAGCCATGC TCAGAAGTAC TTTCTCAGAA GAAGCAACCT GAATCGTCGT CGCCGTAGAT CCAGCCTCTT TGACATCACC
ACCGACATGG TAATTTCATC ACCGCATTTC TCTCGGTCTC ATCCTCTGTT ACCTGTTTGT CTAATCCTCT GTTACCTGTT
TGTCCTTTAT TTTAAAAAGG ATTGATTCAA ATTAATTTCT TAATCAGTCT CCCTATAAAA AAAAAATTAC TGAGATGCTT
TTGGTGTTAT TCCTGTTCAA TTAGTTATAC TCCTAATCAG TAGAGTATTA TTGTCTTACA AAATGACATA TTTTCTCAAG
TATTTCTTAA TGTTCTAGTC AATAGTCGTG TGTTGAATAT TATTACTCCT TCCATTTTAG GGATTTGAGA AAGAAAGAAA
GAAGCTGCCG TGTATCTTGT TATGAAATTC TATTGGTTGT GGAAAGGAAA GTTTGCGTGT GAGTGGTTAT AAAAATGGAT
TTAGGGATTT TGTCTCCTGT GTAATAGTTG ACCTGACTGG AGCTAAAACC TTTTCAAACC TGGATTAGAA TTTGGAGTGA
CAAAATATTA ATGATTTTAT CAATTTTTGT GCCAGGTATC TGCAATTCCA ATGGAGGAAG AACAGGTCCA GAATCACGAC
ACCCTGTTTC ATCCGCAAGC AGTGTGCCCA GCAGTTCCTG AAACTAGCAA AAGTGGAATT CCAATGATGC CAGTGTATCA
GTTTGGGATT GGTTCTGGGG CTATTGCAGT CCAAGGTGGG AAACCATTAG AAGAACTCAC TCTGGGACAA GGAAACATAG
AGCCCAATGT GCCAATCAAT CTGGTCCGTG TAATTCCTGT TGTTGCAGAT CCTAAAGCAT CCACAGTGTC GGATATCATC
ACCCCAAGTT CTAGTTCTGC TCTTGACCCA CCCACACTGT CCTTGGGGCT AGCCTTCTCT TCTGACCAAA GGCAAACATC
ATCAAGACAT TCTGCTTTAC ATGCCATGCC ATGTTTCAGC AATGGAGATA GCATCATTAG TGTTGCTTAA GGAAGATGAC
TCGTGATTGT GTCAAGGTCC TTGTCTAGAG TATCTTGGAT TTACAGGTTA ATATAATATG TTCATCTCTA GTCTCTTGTC
CTTCTGGTAG GGGAAAAAGT GAGAGATGTT GAAGGAAAGG GTGATGGATT TAAGAAGGCA AGTTTTAAGT GACTGAATAT
GATCCTTCTG TTCCTTGTAC AGACCCGGGA AAGGTCCTGT CCTGTTTCTT CTTGTTTGCT TATGTTAATT AATGTATGAC
TTTAGATTAT GGTTTATTTG GTCATTTATG TCTGTAGTTG ATGTAACTGA AAATAACAAA ATCCTCTGTT TTTTTTTCTG
ATAATGCATT AATAGTTGGA TATGGACCGC ACAGACGAGT GGTTTATGAC TCTTTTGGGG ATAATATTAT CAAGTTGGGT
CTGAACTTTG AAGGTTGGTA GTGTGTGTCA TTCCTGTTAG GTGTTGTAGC AGTTTGGGCA CGTTTTTCTT ATCACCGATT
TGCCTATTTA CGTCTGCTCA CGTTATTCCT CTTCCTTTTC ACTTCTCTTA TTTATAAAAT AATAATATTG TATTCAAATT
TAA

>Vigan.01G467000.01
TGAAACTCTG TTGTATTAGA CACCACGCAC TCACCTTTGA TCCTAACTTC TCTCTCCTTC ATATACTTCG TCTTCTCTCT
CCTTTCACCA ATTCACAAAA CTCCCTTGTG TGGTCTCTGA TTCTATCTGA ATCAAACGAA CTAACCGAGA TCACCGTCCG
ATCCGATCAT GTCTCGTGCC TGCGCTGCTA CAGACTCGGT TGCCTCCGGC GAGATCATGC TGTTTGGGGT TCGAGTGGTA
GTCGATTCCA TGAGAAAAAG CGTCAGCATG AACAACCTTT CACAGTACGA GCATAGGCAC GACGCTAACA ACAACAATAA
AGATGTTCTC GCAGTTGGTT ATGCCTCAGC CGATGATGCC GTTCCTCATA ACACTGGTCG CCACCGTGAG CGGGAGCGCA
AGCGAGGAGT TCCGTGGACA GAAGAAGAGC ACAAACTGTT TTTGGTTGGG TTGCAGAAGG TAGGGAAAGG TGATTGGAGA
GGAATCTCCA AAAACTATGT GAAAACGCGA ACTCCGACGC AGGTTGCGAG CCATGCTCAG AAGTACTTTC TCAGAAGAAG
CAACCTGAAT CGTCGTCGCC GTAGATCCAG CCTCTTTGAC ATCACCACCG ACATGGTATC TGCAATTCCA ATGGAGGAAG
AACAGGTCCA GAATCACGAC ACCCTGTTTC ATCCGCAAGC AGTGTGCCCA GCAGTTCCTG AAACTAGCAA AAGTGGAATT
CCAATGATGC CAGTGTATCA GTTTGGGATT GGTTCTGGGG CTATTGCAGT CCAAGGTGGG AAACCATTAG AAGAACTCAC
TCTGGGACAA GGAAACATAG AGCCCAATGT GCCAATCAAT CTGGTCCGTG TAATTCCTGT TGTTGCAGAT CCTAAAGCAT
CCACAGTGTC GGATATCATC ACCCCAAGTT CTAGTTCTGC TCTTGACCCA CCCACACTGT CCTTGGGGCT AGCCTTCTCT
TCTGACCAAA GGCAAACATC ATCAAGACAT TCTGCTTTAC ATGCCATGCC ATGTTTCAGC AATGGAGATA GCATCATTAG
TGTTGCTTAA GGAAGATGAC TCGTGATTGT GTCAAGGTCC TTGTCTAGAG TATCTTGGAT TTACAGGTTA ATATAATATG
TTCATCTCTA GTCTCTTGTC CTTCTGGTAG GGGAAAAAGT GAGAGATGTT GAAGGAAAGG GTGATGGATT TAAGAAGGCA
AGTTTTAAGT GACTGAATAT GATCCTTCTG TTCCTTGTAC AGACCCGGGA AAGGTCCTGT CCTGTTTCTT CTTGTTTGCT
TATGTTAATT AATGTATGAC TTTAGATTAT GGTTTATTTG GTCATTTATG TCTGTAGTTG ATGTAACTGA AAATAACAAA
ATCCTCTGTT TTTTTTTCTG ATAATGCATT AATAGTTGGA TATGGACCGC ACAGACGAGT GGTTTATGAC TCTTTTGGGG
ATAATATTAT CAAGTTGGGT CTGAACTTTG AAGGTTGGTA GTGTGTGTCA TTCCTGTTAG GTGTTGTAGC AGTTTGGGCA
CGTTTTTCTT ATCACCGATT TGCCTATTTA CGTCTGCTCA CGTTATTCCT CTTCCTTTTC ACTTCTCTTA TTTATAAAAT
AATAATATTG TATTCAAATT TAA

>Vigan.01G467000.01
ATGTCTCGTG CCTGCGCTGC TACAGACTCG GTTGCCTCCG GCGAGATCAT GCTGTTTGGG GTTCGAGTGG TAGTCGATTC
CATGAGAAAA AGCGTCAGCA TGAACAACCT TTCACAGTAC GAGCATAGGC ACGACGCTAA CAACAACAAT AAAGATGTTC
TCGCAGTTGG TTATGCCTCA GCCGATGATG CCGTTCCTCA TAACACTGGT CGCCACCGTG AGCGGGAGCG CAAGCGAGGA
GTTCCGTGGA CAGAAGAAGA GCACAAACTG TTTTTGGTTG GGTTGCAGAA GGTAGGGAAA GGTGATTGGA GAGGAATCTC
CAAAAACTAT GTGAAAACGC GAACTCCGAC GCAGGTTGCG AGCCATGCTC AGAAGTACTT TCTCAGAAGA AGCAACCTGA
ATCGTCGTCG CCGTAGATCC AGCCTCTTTG ACATCACCAC CGACATGGTA TCTGCAATTC CAATGGAGGA AGAACAGGTC
CAGAATCACG ACACCCTGTT TCATCCGCAA GCAGTGTGCC CAGCAGTTCC TGAAACTAGC AAAAGTGGAA TTCCAATGAT
GCCAGTGTAT CAGTTTGGGA TTGGTTCTGG GGCTATTGCA GTCCAAGGTG GGAAACCATT AGAAGAACTC ACTCTGGGAC
AAGGAAACAT AGAGCCCAAT GTGCCAATCA ATCTGGTCCG TGTAATTCCT GTTGTTGCAG ATCCTAAAGC ATCCACAGTG
TCGGATATCA TCACCCCAAG TTCTAGTTCT GCTCTTGACC CACCCACACT GTCCTTGGGG CTAGCCTTCT CTTCTGACCA
AAGGCAAACA TCATCAAGAC ATTCTGCTTT ACATGCCATG CCATGTTTCA GCAATGGAGA TAGCATCATT AGTGTTGCTT
AA

>Vigan.01G467000.01
MSRACAATDS VASGEIMLFG VRVVVDSMRK SVSMNNLSQY EHRHDANNNN KDVLAVGYAS ADDAVPHNTG RHRERERKRG
VPWTEEEHKL FLVGLQKVGK GDWRGISKNY VKTRTPTQVA SHAQKYFLRR SNLNRRRRRS SLFDITTDMV SAIPMEEEQV
QNHDTLFHPQ AVCPAVPETS KSGIPMMPVY QFGIGSGAIA VQGGKPLEEL TLGQGNIEPN VPINLVRVIP VVADPKASTV
SDIITPSSSS ALDPPTLSLG LAFSSDQRQT SSRHSALHAM PCFSNGDSII SVA*