GBrowse Details

Vigan.01G451400.01

Basic Information:
Name: Vigan.01G451400.01
Multiple alignment
Variant Information
Position: Chr01:58202403..58208512 (- strand)
Length: 6110
Functional Information:
Description: Similar to Uncharacterized protein. [I1MT91, Glycine max]
GO: Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
Cellular Component: nucleus (GO:0005634)
Molecular Function: DNA binding (GO:0003677)
Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700)
Molecular Function: protein dimerization activity (GO:0046983)
InterPro: Transcription factor, MADS-box (IPR002100)
Transcription factor, K-box (IPR002487)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.16,0.32,8.48,26.40,5.01,7.13,16.93,8.11
Automatic updates:
Name: KT031177 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max clone HN_CCL_28 MADS transcription factor (Glyma05g07380.1) mRNA, complete cds.
PubMed ID: 26268547 NCBI(pubmed)
Status: Known Variant
Name: NM_001317577 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max truncated transcription factor CAULIFLOWER A-like (LOC100798351), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:58202403..58202628 (- strand)
Length: 226
Type: three_prime_UTR
Position: Chr01:58202629..58202728 (- strand)
Length: 100
Type: CDS
Position: Chr01:58202925..58203034 (- strand)
Length: 110
Type: CDS
Position: Chr01:58203128..58203169 (- strand)
Length: 42
Type: CDS
Position: Chr01:58203381..58203422 (- strand)
Length: 42
Type: CDS
Position: Chr01:58203511..58203610 (- strand)
Length: 100
Type: CDS
Position: Chr01:58203689..58203753 (- strand)
Length: 65
Type: CDS
Position: Chr01:58204958..58205036 (- strand)
Length: 79
Type: CDS
Position: Chr01:58207874..58208163 (- strand)
Length: 290
Type: CDS
Position: Chr01:58208164..58208512 (- strand)
Length: 349
Type: five_prime_UTR

>Vigan.01G451400.01 class=Sequence position=Chr01:58202403..58208512 (- strand)
GAGTAAATAA TTTAGTTAAA ATCATAACAA AACAAAACAG AAGAGTCTGA AAGCACTGTT ATATAATAAC AGAAAAGAAA
GATTGTATAT GTAAGGTGTG TGGCAGCGCT TAGAGAAAGG GTGGGACCAG ACTACAGGAA CAGGACAGTG GGTCTAACCA
ATCGCAGGCA GACAACGTAT TTGTGGAAAC CACTCAGGTT TTGAAAACCA CGTTGTAGAT CCGATCAGCA GTTTGGCTTT
CTTGTGTTTC CCCAATAGTT AATTTATTTA TAATAGTAAA TAGAAAATAC CCACCATAAG ATATTTGCGT TTTCTAATAA
AGAACGTAGA AGTTGCGGTA TTTATTTGGA TGTACCTTTT CCTTCCTCTG TCTCGTTTCT TCCTCTCACA TTCTTCCTCT
CCCATTGAAT TGGTAGCAGT GAGGCAATCG TGGAGAAGCT TCAAGAATTT CTCAATGGGA AGGGGAAGAG TGGAGTTGAA
AAGGATCGAA AACAAGATCA ACAGGCAAGT CACCTTCTCA AAGAGAAGGT CTGGTTTGAT CAAGAAAGCC CGCGAGATCT
CTGTGCTTTG CGATGCTGAT GTGGCTCTCA TAGTCTTCTC TACTAAAGGC AAACTTTTGG AATACTCTAA CCAGCCTTCG
TACGTTACTG TACTCTCTCT CTCTCTCTGT ATATGCATGT GTCTCTCTCT TCTACCATTT CTGTGCAATT CATATCTAGT
TTTTCTCTAC CAGTGCACTA TTATTCATCC TCTGTTTCTA TGTGTTTTCT TCTGCATTTG CTTGTCTGTA CTTTTCAATT
TCTTTCTTCC TACATATATA CTTTGATTCG TTCTCTTATT TTCTTTTTCA AGATTATTAG CGTTAGATTT CTTTTTCAGT
TAGACTTGAT TTCTGAAAGT AAGAAAGAAA ACAAAAGAAA CCGAACTTCT GCACCTCGAT CGAGTGCGTG CGAGGTGTTT
GGGCAAAGAA ATTGTTAGAA ATAGAAAGTT CAGCTTCGCC ATTATATGTT TGTATTTTCT ACTGATTTTA ATATCACACT
TATTGTAGAA TTAGTTTGGT TGTGATGATT TTCCATTAAC TAATTAGAAA TTCAACCCGA CATTATTTTA GGTTTAAAGC
TTATTATTAA TTTCTTCCCC TTTTTTACAA AACGCAAATA ATAATGTAAA ATACATTATC GTTTATTATT AAAAGAAACA
AAGACAAGAT TATAATAATA AAAGTTATAC ATACTAATTT TATACAACTG ATTCTTGAAA CCTAAAATAA AACCTTGAGT
TATCTTAACC TTGTGTAGTC CTGCTTGATA TATTTTTTTT TCTTTTGAGA GTGGTAATTT GAGTGTGTGT TGTTGGTAAA
GTCCCTCATC ATGTTTTTAA AAGAAGAATT GAGTTCGCAA TAATTGAACT TTAACAACTT TTAAATTTAG AAGTACTAAA
ATAATCAAAG ACAGATAATA ATTTTGTCAT CTACCCTACA GAAGTTGAAT GTAACCAAAC ATATTGTAGT GAAATATATG
TATGTGATTT TCCATTTGGA GGCCATCTTC ATATCTAACA TACATAGCCA CACCTAACTT TATGTAAAGA AACCAATTTG
GAAAAATATA TTTGGATAAC ACTCGATGAG AGAGGTATGA TGATGTAATA AAAAAAGTGA AAGAGACTCA ATGTCTTAGC
CCCATTCAAA ATATGAATAT TTAAATGCTA TTTGGTTCCT TTCTTTAAGC GTTGTCTTTT AAGGAAGAGC CTAGAATGTT
TGAATGTTTA TCAATGAACT GTCTGTGGTG GGTGTCTTTA AAATGACTAC TTACTGAAGT TGAATGGCTT TTTTTAAGCA
TGAAAATTGA ATTTCGATCT CTAAATCTAT AAAATAGTGA TTTTACACAT TGGGATTTCA GTTTAAATTT AATATAGCTA
ATATCTCCAC ACAAGTTATT ATGTCTAATG TATTTCAAAC TAATTTGGTA GAACTAAATT TAACATATTT AAATAATCAT
TTATTTAATA TTTTCAGCAG TTAAAGAGTG CTCACAACAC TTAAATGGGA TAAACAGTAC AAGTATCAAA TCAAAGTAAG
TTACAAATAG GAAAATGTTA GAAATACAAT GGCTAAAAAG TATGCAATGA CTAGATGTAT CCAAAGCTTA ATAAAGGTAG
AAACGGGCTT TCCTTTTTTC TTGTGTGCTG ATGTTCTCCT TTATTTTTAA AATATATTAA AGAATTTTTT AATGTATTTG
TGGGGATAAA TTGGTGGTTT ATCATAATAT CCTCGTGTGG GTGTGAGTAT GGGATGGAAT AGGTTTCATG ATGTGAGTGA
ATATCAGATG AAACCGGTTC TATGGTGTGA GTGTGTGTGG GATGGAATCG AGTCCATGTA TGCGAAAATA TGAAATCGAC
TTTATGGAAT GTGCATAGGA GATGAAATCG ATTCCATTAT AAGATGATGC ATGTTTAGAT TCTATTATTT ATTGAAATGT
ATATGTTTTT TGTTTTTATA TATATAATAA TAATTATTAT AAATAATAAT AATAATAATA ATATTTATTT ATTAGAATAG
TATTCTTTTA AATTTTATTT TTTAAAATAT ATTTCATAAA ATAAATCTAA TTTATCTAAA TGTTATTTTT AATATTTAAT
TTAATTATCT TATTTTTCTT TTTATTAAAT ATTTTTTATC TATTAAATCA TTCACAAATT TTTATAAATT TTATTTTTAA
ATTTACTCAA TTTTATTTCA AAATCCCTTA AAAAAAAGAC AACGTAACTT TAGTATAAAT TCATCTGAAT TTATTCGGTC
ACTCTTGGTC AAATCAATCT TGTCAGCACA GCCTTAGTCC TTAGTCCTCA ATCTTCCAGA GCTTGATACT TATCCACTCG
AGAAAAGCTG AATACAATAT CTCATTGTTG AAATATCATG ACAGAAGCTT AAAGCAATGT TTGACCGCTA TGGACGGAAA
CGTCCAATAA GTTACAGGAG AGTATATAGA TCTTTCAAGG AAAATCATTC GGTATTAACA AAATCTTCTA GGTAGAAACT
GGGCTTCTTG GGTGAGGGTG GAAACTGATA ATTATAAATT TCCCTTATAT TATGAATTGA TTGCCTTTTC AAATTATTAC
ATTAAGTTTC ATTGTATTTA AATGGTTATT GTAAAAGAAA TTTGAAATTG TTAGTTTGTA CTACTTTTTC CTTTTTATAT
TACTTCTCTC TCTCTCTCAC TAAATTAATA ATGGAAATAA TTTTGTTAAC CACTTAAACG AACAAAAGGA TTGAATTAAA
AAATATAGTA AAAAACCAAG TAGAGTAAAC AAATCACTTA ATTATTTGAA AGCCTTTAGC CTGCTATATT TGAAGTATGA
ATTAAAAGCT ATTTGCTTTC CAATGCAGTT GTTGTGTTTG TTTGTAGGCT TTTAAGGTGA TGCAATGAGC ATATAAAATT
TTGCTCACTG CAACTTTTAA TTTCCTGAGT TAACAGTATG GAAAGAATTC TTGAACGGTA TGAGAGGCAT TCGTATGCGG
AGAAGCAAGA AGGTGCAGCT GATCAACCAC CAAATGTAAG TCTTTAATTT CCTCTTAATC AAATTTTAAC TCTTATTTTC
ATATATAGTT TTCCATTGTG TGTCTAAACT TTTAGCTGTC AACTAATTAA AGATTATTAT TAGTATCGTT TTAGTATAGT
TTGATACTAA ATTTTTAAAG ATATTGGAAT GATGATTAAA TTTTCAGCAA TGAGATGAAT TTGGACTGCA AAAAATAAAT
AAATCTATTT CATCATCTAT CGAGTTTCAT CATAGTTAAA TGCGGACCAA ATTTGTAGGT TGGTTGGAGA GTAAAGGAAA
ATACCAAATG CAAAAACAAT GGTTGCTTGG ACAATGTATA TAAGGTGGAT GAGATAGAAA AGGACTAGGT CACGAGGTCA
TTGAAATTGG TTTTTAAATT TGGCAAAAAG AAAAAAAAAT AGTTTAACAC TCATATTAAA TAGAAATGTA GAGTTAAGTT
AAGAAGAAAA AAAAACCTCA CAAACACAAA AGGTTTAAGA ATTTGTGTTA GAAGTGGTAT CGTAACATCT TATATAAACA
ATTTATATCT TAGATACAAA TGATAAATAT TTCCAAATTT TTTCTAATAT AAAAAATTGT ATCGAAATTA TTTTGCAGGT
CCTAATTAGT TTGTTACCGT TTTAATTGGG ATAAAATTTA GTTCCAACTG CAATAGATTT TTTCAAGCAA TATGTTTCCA
TATTTTTCTT GTTTTCTAAA TAATTGAAGA TAGAATATTG TGTAGTTAAG TTTTTTGTCC TCATGAATTT TTAATTAGTG
ATACAAATAA TTGCAATTTC TGAAAAATGA TTATCTAATT CTAAGAAAAC AATTAGCTTC AGTTGAGTTG TAATAAATTT
AATTTATTTT ATGTAATTAA CAATAGCTTC GGCTTATTTC ATAAAAATAA TGCCAAAATC ATTTTTCAAA AGTCAATTTA
TTCATATTGC ACCATTCTAC TCAGCGTAAT ATGTTATAAT TAGAGAACGA ATATGTAATT CAACCCTTAT GGACCCAATC
TTCTTCCTTT CTTTCCAAAC AAATAATCTT AAATACATGA ACCCAAACTC ATGTTATACA TTTAATCATA TTTCTAAATG
GCACGGATCT TCAAGAAATA TTCTCTTACA ATCATTAAGA TAAATAATTG TTAGCTGTTA CTGTTACAAT AAATTAAAAG
CCTTAGAATA CTGGTTTAAT CATCTGCTTG CATTGCTAGG AAAACTGGGC TATAGAACAC GAAAAGTTGA AGGCTAGAGT
GGAGGTACTA CAGCGACACC AAAGGTATTG AAATTTTGTG AACAAGACAT GTGTTTGTTG TGTAACAAAA TATGCAGTGA
CAGTTTTAGT GCTTCCTTTC AGGAATTTCA TGGGAGAAGA GCTTGATAAC ATAAATCTTA GAGGACTTCA GAGTTTAGAA
CAACAACTTG ATTCCGCCCT CAAACACATT AGATCACGAA AGGTGAAACA AAACTATATA TATATATACA TGAAACCTAC
ATATCCACAA ATGCATAACT ACGTATCATT ATCTGTGTGT TAATGTGCAG AACCAAGCCA TGCATGAATC TATTTCAGAG
CTTCATAAAA AGGTGATTTT TTTTTTGGGG TGTATAATAT TGAATGTAGT AAACCACCGG GTTGTCATAA CATGAAACGT
AGTGAACAGT TTTTGTTTCT CTCTTTTTAC AGAAGAATAG TGAAATATTG TTTTCATTGA CAAAAAGTTC TGGATGAGTT
ACCCGTGTAT GAATCATGAT TTGATTAAAG TGACATACGT ACTTGTATTA TTCTGTCATG CAGGATAAGG CACTTCGGGA
ACGTAACAAC TTGCTCGCCA AGAAGGTTAT ATATATTGTT GGTTTATAAC AGCTTGTGTA CTAGTTTGTG AAATTTGGAT
TTCAAATCTT AAACATACAT GGTTTGAGTG CACAACAGAT AAAAGAAAAA GAGAAGGCAG TGGTTCCTCA AGAACAGGAG
GGGTTGCTAA ATAACGGGGA TGTGACTTCT CTCATGGTAA CTAAGCCATT GGAGTCCCTG AATATTGGGT TAGTATCTTT
CCTCTGAATC TATTTCATGT TTTTTACATC ATTTATCATA TCTTTTTCAC TGCATTCTCA AAATAAGTTG TATGCAATTA
GGGATAAGAA CTCCAAGAAG TGTGTCATTT TTGTAATTTA TTATGAGTTG AATTGCATTT GTAACTAATG ATACTAATTA
AGTGACTTGG GAGACTTGAT GTAGAGGCTC CCCAGAAGCG AGATGTAATG AAGGAACTCC AACATCAACT CAACCTAAAA
CCATAATTCC TCCTTGGATG GTGACTCTTC CTACAGATGA ATAGAAGAAG CTTGTTAGAT CATTCCACTT GTATATAAGT
TCACGTACAT GAAGACATTT GCTGCTGTCT ATACCGCTTG GGTTGTAACT TGTGAGCTAC GTTACTGCAT TTTGCTATGT
ACATCAAAGG TTCTGCATAT AATAATACTA ATTAAATTGT TTCAACTAAA AGGGTTCAAG TTTACGACAT GTCCAATATA
AAATTCTTGA TAACTTTACC AATAGTGCCG 

>Vigan.01G451400.01
GAGTAAATAA TTTAGTTAAA ATCATAACAA AACAAAACAG AAGAGTCTGA AAGCACTGTT ATATAATAAC AGAAAAGAAA
GATTGTATAT GTAAGGTGTG TGGCAGCGCT TAGAGAAAGG GTGGGACCAG ACTACAGGAA CAGGACAGTG GGTCTAACCA
ATCGCAGGCA GACAACGTAT TTGTGGAAAC CACTCAGGTT TTGAAAACCA CGTTGTAGAT CCGATCAGCA GTTTGGCTTT
CTTGTGTTTC CCCAATAGTT AATTTATTTA TAATAGTAAA TAGAAAATAC CCACCATAAG ATATTTGCGT TTTCTAATAA
AGAACGTAGA AGTTGCGGTA TTTATTTGGA TGTACCTTTT CCTTCCTCTG TCTCGTTTCT TCCTCTCACA TTCTTCCTCT
CCCATTGAAT TGGTAGCAGT GAGGCAATCG TGGAGAAGCT TCAAGAATTT CTCAATGGGA AGGGGAAGAG TGGAGTTGAA
AAGGATCGAA AACAAGATCA ACAGGCAAGT CACCTTCTCA AAGAGAAGGT CTGGTTTGAT CAAGAAAGCC CGCGAGATCT
CTGTGCTTTG CGATGCTGAT GTGGCTCTCA TAGTCTTCTC TACTAAAGGC AAACTTTTGG AATACTCTAA CCAGCCTTCT
ATGGAAAGAA TTCTTGAACG GTATGAGAGG CATTCGTATG CGGAGAAGCA AGAAGGTGCA GCTGATCAAC CACCAAATGA
AAACTGGGCT ATAGAACACG AAAAGTTGAA GGCTAGAGTG GAGGTACTAC AGCGACACCA AAGGAATTTC ATGGGAGAAG
AGCTTGATAA CATAAATCTT AGAGGACTTC AGAGTTTAGA ACAACAACTT GATTCCGCCC TCAAACACAT TAGATCACGA
AAGAACCAAG CCATGCATGA ATCTATTTCA GAGCTTCATA AAAAGGATAA GGCACTTCGG GAACGTAACA ACTTGCTCGC
CAAGAAGATA AAAGAAAAAG AGAAGGCAGT GGTTCCTCAA GAACAGGAGG GGTTGCTAAA TAACGGGGAT GTGACTTCTC
TCATGGTAAC TAAGCCATTG GAGTCCCTGA ATATTGGAGG CTCCCCAGAA GCGAGATGTA ATGAAGGAAC TCCAACATCA
ACTCAACCTA AAACCATAAT TCCTCCTTGG ATGGTGACTC TTCCTACAGA TGAATAGAAG AAGCTTGTTA GATCATTCCA
CTTGTATATA AGTTCACGTA CATGAAGACA TTTGCTGCTG TCTATACCGC TTGGGTTGTA ACTTGTGAGC TACGTTACTG
CATTTTGCTA TGTACATCAA AGGTTCTGCA TATAATAATA CTAATTAAAT TGTTTCAACT AAAAGGGTTC AAGTTTACGA
CATGTCCAAT ATAAAATTCT TGATAACTTT ACCAATAGTG CCG

>Vigan.01G451400.01
ATGTACCTTT TCCTTCCTCT GTCTCGTTTC TTCCTCTCAC ATTCTTCCTC TCCCATTGAA TTGGTAGCAG TGAGGCAATC
GTGGAGAAGC TTCAAGAATT TCTCAATGGG AAGGGGAAGA GTGGAGTTGA AAAGGATCGA AAACAAGATC AACAGGCAAG
TCACCTTCTC AAAGAGAAGG TCTGGTTTGA TCAAGAAAGC CCGCGAGATC TCTGTGCTTT GCGATGCTGA TGTGGCTCTC
ATAGTCTTCT CTACTAAAGG CAAACTTTTG GAATACTCTA ACCAGCCTTC TATGGAAAGA ATTCTTGAAC GGTATGAGAG
GCATTCGTAT GCGGAGAAGC AAGAAGGTGC AGCTGATCAA CCACCAAATG AAAACTGGGC TATAGAACAC GAAAAGTTGA
AGGCTAGAGT GGAGGTACTA CAGCGACACC AAAGGAATTT CATGGGAGAA GAGCTTGATA ACATAAATCT TAGAGGACTT
CAGAGTTTAG AACAACAACT TGATTCCGCC CTCAAACACA TTAGATCACG AAAGAACCAA GCCATGCATG AATCTATTTC
AGAGCTTCAT AAAAAGGATA AGGCACTTCG GGAACGTAAC AACTTGCTCG CCAAGAAGAT AAAAGAAAAA GAGAAGGCAG
TGGTTCCTCA AGAACAGGAG GGGTTGCTAA ATAACGGGGA TGTGACTTCT CTCATGGTAA CTAAGCCATT GGAGTCCCTG
AATATTGGAG GCTCCCCAGA AGCGAGATGT AATGAAGGAA CTCCAACATC AACTCAACCT AAAACCATAA TTCCTCCTTG
GATGGTGACT CTTCCTACAG ATGAATAG

>Vigan.01G451400.01
MYLFLPLSRF FLSHSSSPIE LVAVRQSWRS FKNFSMGRGR VELKRIENKI NRQVTFSKRR SGLIKKAREI SVLCDADVAL
IVFSTKGKLL EYSNQPSMER ILERYERHSY AEKQEGAADQ PPNENWAIEH EKLKARVEVL QRHQRNFMGE ELDNINLRGL
QSLEQQLDSA LKHIRSRKNQ AMHESISELH KKDKALRERN NLLAKKIKEK EKAVVPQEQE GLLNNGDVTS LMVTKPLESL
NIGGSPEARC NEGTPTSTQP KTIIPPWMVT LPTDE*