Variant information

Chr01:58202403 - 58208512

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 [SNPs] [Indels]

SNPs

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
58202412TA481931.771.00UPSTREAM(|4333||None|Vigan.01G451300.01), UTR_3_PRIME(|217||None|Vigan.01G451400.01)Vigna nepalensis
58202424CA532144.771.00UPSTREAM(|4345||None|Vigan.01G451300.01), UTR_3_PRIME(|205||None|Vigan.01G451400.01)Vigna nepalensis
58202515AT552302.771.00UPSTREAM(|4436||None|Vigan.01G451300.01), UTR_3_PRIME(|114||None|Vigan.01G451400.01)Vigna nepalensis
58202533GA522311.771.00UPSTREAM(|4454||None|Vigan.01G451300.01), UTR_3_PRIME(|96||None|Vigan.01G451400.01)Vigna nepalensis
58202693GC502041.771.00NON_SYNONYMOUS_CODING(MISSENSE|cCa/cGa|P255R|None|Vigan.01G451400.01), UPSTREAM(|4614||None|Vigan.01G451300.01)Vigna nepalensis
58202871GA622516.771.00INTRON(|||None|Vigan.01G451400.01), UPSTREAM(|4792||None|Vigan.01G451300.01)Vigna nepalensis
58202889AT602619.771.00INTRON(|||None|Vigan.01G451400.01), UPSTREAM(|4810||None|Vigan.01G451300.01)Vigna nepalensis
58203715TC491954.771.00SYNONYMOUS_CODING(SILENT|agA/agG|R136|None|Vigan.01G451400.01)Vigna nepalensis
58203971TC522027.771.00INTRON(|||None|Vigan.01G451400.01)Vigna nepalensis
58204351GT622454.771.00INTRON(|||None|Vigan.01G451400.01)Vigna nepalensis
58204497GT722556.771.00INTRON(|||None|Vigan.01G451400.01)Vigna nepalensis
58204545GT502141.771.00INTRON(|||None|Vigan.01G451400.01)Vigna nepalensis
58204583CG552176.771.00INTRON(|||None|Vigan.01G451400.01)Vigna nepalensis
58204819AC542217.771.00INTRON(|||None|Vigan.01G451400.01)Vigna nepalensis
58204893CA582285.771.00INTRON(|||None|Vigan.01G451400.01)Vigna nepalensis
58205229AG723301.771.00INTRON(|||None|Vigan.01G451400.01)Vigna nepalensis
58205252TG673121.771.00INTRON(|||None|Vigan.01G451400.01)Vigna nepalensis
58205322GA612806.771.00INTRON(|||None|Vigan.01G451400.01)Vigna nepalensis
58205328AC582705.771.00INTRON(|||None|Vigan.01G451400.01)Vigna nepalensis
58205362CT572299.771.00INTRON(|||None|Vigan.01G451400.01)Vigna nepalensis
58205408GA572618.771.00INTRON(|||None|Vigan.01G451400.01)Vigna nepalensis
58205409GT572581.771.00INTRON(|||None|Vigan.01G451400.01)Vigna nepalensis
58205419CA582541.771.00INTRON(|||None|Vigan.01G451400.01)Vigna nepalensis
58205482CT592761.771.00INTRON(|||None|Vigan.01G451400.01)Vigna nepalensis
58205488GT622806.771.00INTRON(|||None|Vigan.01G451400.01)Vigna nepalensis
58205508AT562581.771.00INTRON(|||None|Vigan.01G451400.01)Vigna nepalensis
58205535CA612707.771.00INTRON(|||None|Vigan.01G451400.01)Vigna nepalensis
58205620AG491854.771.00INTRON(|||None|Vigan.01G451400.01)Vigna nepalensis
58205671AG411851.771.00INTRON(|||None|Vigan.01G451400.01)Vigna nepalensis
58205676CG421936.771.00INTRON(|||None|Vigan.01G451400.01)Vigna nepalensis
58205682CT431925.771.00INTRON(|||None|Vigan.01G451400.01)Vigna nepalensis
58205755CA341606.771.00INTRON(|||None|Vigan.01G451400.01)Vigna nepalensis
58205818GT321411.771.00INTRON(|||None|Vigan.01G451400.01)Vigna nepalensis
58205843AG291276.771.00INTRON(|||None|Vigan.01G451400.01)Vigna nepalensis
58205850AT241051.771.00INTRON(|||None|Vigan.01G451400.01)Vigna nepalensis
58206341GA15646.771.00INTRON(|||None|Vigan.01G451400.01)Vigna nepalensis
58206346CA16691.771.00INTRON(|||None|Vigan.01G451400.01)Vigna nepalensis
58206356CA18781.771.00INTRON(|||None|Vigan.01G451400.01)Vigna nepalensis
58206433CT331277.771.00INTRON(|||None|Vigan.01G451400.01)Vigna nepalensis
58206468TC391573.771.00INTRON(|||None|Vigan.01G451400.01)Vigna nepalensis
58206485CA431661.771.00INTRON(|||None|Vigan.01G451400.01)Vigna nepalensis
58206501AG441610.771.00INTRON(|||None|Vigan.01G451400.01)Vigna nepalensis
58206524AG421938.771.00INTRON(|||None|Vigan.01G451400.01)Vigna nepalensis
58206534AG421879.771.00INTRON(|||None|Vigan.01G451400.01)Vigna nepalensis
58206574AT421945.771.00INTRON(|||None|Vigan.01G451400.01)Vigna nepalensis
58206577AG461981.771.00INTRON(|||None|Vigan.01G451400.01)Vigna nepalensis
58206619CT391428.771.00INTRON(|||None|Vigan.01G451400.01)Vigna nepalensis
58206649TG321440.771.00INTRON(|||None|Vigan.01G451400.01)Vigna nepalensis
58206654GA341501.771.00INTRON(|||None|Vigan.01G451400.01)Vigna nepalensis
58206657CG321456.771.00INTRON(|||None|Vigan.01G451400.01)Vigna nepalensis
58206706GA331537.771.00INTRON(|||None|Vigan.01G451400.01)Vigna nepalensis
58206716AG301321.771.00INTRON(|||None|Vigan.01G451400.01)Vigna nepalensis
58206722CT291314.771.00INTRON(|||None|Vigan.01G451400.01)Vigna nepalensis
58206728CT291269.771.00INTRON(|||None|Vigan.01G451400.01)Vigna nepalensis
58206755CT20845.771.00INTRON(|||None|Vigan.01G451400.01)Vigna nepalensis
58206763GA18781.771.00INTRON(|||None|Vigan.01G451400.01)Vigna nepalensis
58207075TA512254.771.00INTRON(|||None|Vigan.01G451400.01)Vigna nepalensis
58207083CT542379.771.00INTRON(|||None|Vigan.01G451400.01)Vigna nepalensis
58207102AG522176.771.00INTRON(|||None|Vigan.01G451400.01)Vigna nepalensis
58207116CA552253.771.00INTRON(|||None|Vigan.01G451400.01)Vigna nepalensis
58207145TC652629.771.00INTRON(|||None|Vigan.01G451400.01)Vigna nepalensis
58207415GA532361.771.00INTRON(|||None|Vigan.01G451400.01)Vigna nepalensis
58207436AT612604.771.00INTRON(|||None|Vigan.01G451400.01)Vigna nepalensis
58207479AT682987.771.00INTRON(|||None|Vigan.01G451400.01)Vigna nepalensis
58207503AG612774.771.00INTRON(|||None|Vigan.01G451400.01)Vigna nepalensis
58207545CG552197.771.00INTRON(|||None|Vigan.01G451400.01)Vigna nepalensis
58207587GA522047.771.00INTRON(|||None|Vigan.01G451400.01)Vigna nepalensis
58208188GA562188.771.00START_GAINED(|||None|Vigan.01G451400.01), UTR_5_PRIME(|25||None|Vigan.01G451400.01)Vigna nepalensis
58208236AT512038.771.00UTR_5_PRIME(|73||None|Vigan.01G451400.01)Vigna nepalensis
58208398CT471870.771.00UTR_5_PRIME(|235||None|Vigan.01G451400.01)Vigna nepalensis
58208510CT491972.771.00DOWNSTREAM(|4950||None|Vigan.01G451500.01), UTR_5_PRIME(|347||None|Vigan.01G451400.01)Vigna nepalensis

Indels

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
58202539CCACAT532518.731.00UPSTREAM(|4461||None|Vigan.01G451300.01), UTR_3_PRIME(|89||None|Vigan.01G451400.01)Vigna nepalensis
58202887TAT582610.731.00INTRON(|||None|Vigan.01G451400.01), UPSTREAM(|4809||None|Vigan.01G451300.01)Vigna nepalensis
58203311CTACGTC441924.731.00INTRON(|||None|Vigan.01G451400.01)Vigna nepalensis
58203366CCA34892.731.00INTRON(|||None|Vigan.01G451400.01)Vigna nepalensis
58203484GTAG461710.731.00INTRON(|||None|Vigan.01G451400.01)Vigna nepalensis
58204553AAT502200.731.00INTRON(|||None|Vigan.01G451400.01)Vigna nepalensis
58204752TAT411860.731.00INTRON(|||None|Vigan.01G451400.01)Vigna nepalensis
58204756TAT38817.730.92INTRON(|||None|Vigan.01G451400.01)Vigna nepalensis
58205182TTTCAAATAATTAAGTGATTTGTTTACTCTACTTGGT753388.731.00INTRON(|||None|Vigan.01G451400.01)Vigna nepalensis
58205263GGTTAACAAAAATATGAAAAT633328.731.00INTRON(|||None|Vigan.01G451400.01)Vigna nepalensis
58205294TGT602694.731.00INTRON(|||None|Vigan.01G451400.01)Vigna nepalensis
58205296AGAGA612784.731.00INTRON(|||None|Vigan.01G451400.01)Vigna nepalensis
58205323GAG602788.731.00INTRON(|||None|Vigan.01G451400.01)Vigna nepalensis
58205387CTC562390.731.00INTRON(|||None|Vigan.01G451400.01)Vigna nepalensis
58205447AGTTTCCA602699.731.00INTRON(|||None|Vigan.01G451400.01)Vigna nepalensis
58205454ACCCTCACCCAAGAAGCCCAGA612743.731.00INTRON(|||None|Vigan.01G451400.01)Vigna nepalensis
58205526AAC552526.731.00INTRON(|||None|Vigan.01G451400.01)Vigna nepalensis
58205716CGC391736.731.00INTRON(|||None|Vigan.01G451400.01)Vigna nepalensis
58205719ATA391736.731.00INTRON(|||None|Vigan.01G451400.01)Vigna nepalensis
58205722AATTCAGATGAATTTATACTAAAGTTACA381711.731.00INTRON(|||None|Vigan.01G451400.01)Vigna nepalensis
58205763TTA331478.731.00INTRON(|||None|Vigan.01G451400.01)Vigna nepalensis
58205809TAAT321400.731.00INTRON(|||None|Vigan.01G451400.01)Vigna nepalensis
58205815TTTC321447.731.00INTRON(|||None|Vigan.01G451400.01)Vigna nepalensis
58205827TTTGAGTGATC281402.731.00INTRON(|||None|Vigan.01G451400.01)Vigna nepalensis
58205835TTA291312.731.00INTRON(|||None|Vigan.01G451400.01)Vigna nepalensis
58205854AGA221042.731.00INTRON(|||None|Vigan.01G451400.01)Vigna nepalensis
58205861TTTACCA17772.731.00INTRON(|||None|Vigan.01G451400.01)Vigna nepalensis
58205864GAG11547.731.00INTRON(|||None|Vigan.01G451400.01)Vigna nepalensis
58205868AAATG9412.741.00INTRON(|||None|Vigan.01G451400.01)Vigna nepalensis
58205873ATTA7367.741.00INTRON(|||None|Vigan.01G451400.01)Vigna nepalensis
58205876AAGT7277.771.00INTRON(|||None|Vigan.01G451400.01)Vigna nepalensis
58205881TTAT5187.871.00INTRON(|||None|Vigan.01G451400.01)Vigna nepalensis
58206328CACAAGAC12547.731.00INTRON(|||None|Vigan.01G451400.01)Vigna nepalensis
58206345GGT15682.731.00INTRON(|||None|Vigan.01G451400.01)Vigna nepalensis
58206361AATTATGTGG20862.731.00INTRON(|||None|Vigan.01G451400.01)Vigna nepalensis
58206684AGA351537.731.00INTRON(|||None|Vigan.01G451400.01)Vigna nepalensis
58206772TAAT12547.731.00INTRON(|||None|Vigan.01G451400.01)Vigna nepalensis
58206777GGGGTCTGTTC9412.741.00INTRON(|||None|Vigan.01G451400.01)Vigna nepalensis
58206779CCTTG7367.741.00INTRON(|||None|Vigan.01G451400.01)Vigna nepalensis
58207191GGA541492.731.00INTRON(|||None|Vigan.01G451400.01)Vigna nepalensis
58207381AAATTAATAATAACTAGGTCATTCCATTACAAG482899.731.00INTRON(|||None|Vigan.01G451400.01)Vigna nepalensis
58207654TAATAT682991.731.00INTRON(|||None|Vigan.01G451400.01)Vigna nepalensis
58207844CCAGAGAAAG482162.731.00INTRON(|||None|Vigan.01G451400.01)Vigna nepalensis
58208113AAG461675.731.00FRAME_SHIFT(|tct/tcCt|S17S?|None|Vigan.01G451400.01)Vigna nepalensis