GBrowse Details

Vigan.01G418700.01

Basic Information:
Name: Vigan.01G418700.01
Multiple alignment
Variant Information
Position: Chr01:55393389..55399628 (- strand)
Length: 6240
Functional Information:
Description: Similar to Defective in cullin neddylation protein. [I1MTX5, Glycine max]
GO: Molecular Function: calcium ion binding (GO:0005509)
InterPro: Potentiating neddylation domain (IPR005176)
EF-hand domain pair (IPR011992)
Defective-in-cullin neddylation protein (IPR014764)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:4.02,6.16,8.78,7.50,18.00,13.23,13.31,7.62
Automatic updates:
Name: NM_001349737 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max cullin-binding superfamily protein (LOC100777526), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:55393389..55393632 (- strand)
Length: 244
Type: three_prime_UTR
Position: Chr01:55393633..55393734 (- strand)
Length: 102
Type: CDS
Position: Chr01:55394929..55394994 (- strand)
Length: 66
Type: CDS
Position: Chr01:55395398..55395504 (- strand)
Length: 107
Type: CDS
Position: Chr01:55395610..55395670 (- strand)
Length: 61
Type: CDS
Position: Chr01:55395792..55395875 (- strand)
Length: 84
Type: CDS
Position: Chr01:55397252..55397288 (- strand)
Length: 37
Type: CDS
Position: Chr01:55397381..55397455 (- strand)
Length: 75
Type: CDS
Position: Chr01:55397868..55397952 (- strand)
Length: 85
Type: CDS
Position: Chr01:55399299..55399368 (- strand)
Length: 70
Type: CDS
Position: Chr01:55399369..55399628 (- strand)
Length: 260
Type: five_prime_UTR

>Vigan.01G418700.01 class=Sequence position=Chr01:55393389..55399628 (- strand)
CAAAAGTTAT GACAAAGTGA TTTCAATTAA CTCACAATCT AATAATTAAG TTCATACAAT TAATTCCCAA AGGGAAAAAA
AAGATTGATG GAAGGAGCAC TAATTCCAAA GCTATAAAAC CTTGTTAAAC CTTGAATCTG TGCTGGTTTC TCTTCGTCAT
CATCCTCCGT GAATAGGGTT TACTTTCTTG AATTTCTTTC GAATCGATTC CATTGTGTCT CTCAAAGATT TGACAGTGTT
TGGTTGCACA ATCTGTGAAG ATGCCTCGTC CCAAAAGAAA AGCGGCCCCA CCAATCACTT CTTCTGATGT TGATTCTTCT
CTTCGTCCCG GTACTTCTAT TTCTCGTTTC CGATTGGTTC TACCCCGCGA AAATCGAATC ACAATATTCA CTAAAAGAAC
AATGAATATT GAAAAATTTA ATTATTTAAA TTTTTTTTTT GTTTTCTTGT GGGGCAATGA GTTTTTCTGT GGCGAAGTAT
CAAAGTTGGC AAATTTAATC GATCTATGTG CTGATCGAGG TCAAATATCT GTAATTGGAC CATGTCTTGC TTTTGTAATG
TTCTGGATAC GATATTCGAT TTAAACGCTT CAAAGTTCAA TGCATGAATA CACAAGATTT TGGTGTTGTG GTTTTATAGT
TCGGACACGA TTTGATCAGA TTCAGTGCGG CATATTTGAT TATTTGCCTT CATTTTTTAC GGGTTAATTT GGAGGGAGAG
GGTGGTGGTG GTGCTAGGTG TCTATCTTGT TTTTGCGATG CTTCCCATCA ATTACTCATT TAGCCTGGGT TTTTCGGCTG
TTTATGAATC ATTTACATGT AATGTTAATT GTGTAATACT GATGCAATTT GTTATTAGAA TGCTCGTGCC CAATTATGAT
CTAAATTATT TTCAATGGGC AGTTTACCTT GTTTATTTTT AGTGTGCATC CGGTTACCTT CTGTTCTGCA AGCTCATAAT
TTGAACGGTG CTTGTCAGGC ACATAACTTG AATGGCACCT GTATCTTACA TGGTGGTATA TATAAATTGG AAAAACACAT
CTGTGCTTAT AAGACAATGT CTGTTTCGTA TTAAATAGTT AATGATGTCA TAGTGTTTTA AAATCCAGAG TACATATCTT
CTGGGAGGCA GCTTTTCTGC TATCTGTTGC AGCTTACTAG AACAGTATGA TGCCACTTAT GAAGACAGCC TGCATGTTTA
TAGCCAATAC AATCTGAGAG CAATTTTAGC TTAATACTTC TACAGTTCAT GAGGGTTGAT TGATCTATTT ATGGGGGAAA
CATTTAAAAT GCTACGAGGT AAAAGCACTA CCATTGTGGT GAGACTGAAG ATGTTATTAA GAAGGCAACT GCATTCCCGT
AGACAAAATA ATTAGTGTCC TTTTGGTTAG ATTTGTGGAA AAAAATTGTA ACTATTTGCA TTCCAAATGA ATCATTTGGT
TTTTGCTGAG CTATTTTTTC GAATAGTATC AGCATGAAAG AGGTCTCTGG AAGTACGATG AAATATTTCA CTATGTGTAT
TGTCCTGAAC CGTAAGCCTT AATTATGCAT GACTGCTTCT AGTTTTTCAA ATTAATGTCG AAATATTTCG TTTTATCTTC
ACCTTTTCCA TCTAATGCTG ACTCGAATTT GCTGAGTTCT TGATAGTACT TATTTCATTT CGTGTTATTA TTTCAGAACC
AAAGAAAGCA ACCACAAAGC AATTAGATCG AATAGATAAC ATATTCGAAT CGTATGCAAA TAAGTCACTG GGTTTGATTG
AGTAAGTATG TGCATGTTGA AATTATTGTG GCATGCTTTA ATTGTTGTTT GATCTTGTTT AGGATTAGAA TATTTCATGC
TTTAGTTAAA TTGATTTGCT TGGAACTTAG CTTATGTTTA AGTAGCATAC GGTGGTTTAT TTATTTTTTC AATGCATTTT
TTAAGTAAGG AATTAGACAG GGCTTAGGTC TGTTTATATA TATATATATA TATATATATA TATATATATA TATATATATA
TATATATATA TATATATATA TATAAATTTA GTTAACAAAC ACGTGTTCAG CAATATTATG CGTGTTGAGA TTCAATGCTT
CTCTTTTATG TTTTTAAGAC TGTTTCCCTT CTTCGTTAAA GTTTATGTGA CTCGTCTTGA TGCATTCTCT ATACTTTTTG
TTTGGTTGGT CAGCCCAGAC GGGATTGTGG CATTTTGTAA AGATGTGCAT GTGGATCATA CAGATGTTAG AATGCTGATA
CTTGCTTGGT AAGTAATGGA CTGGATTAAT CTTTCCTTTT CCTGTATATA ACTGGTTTTT TGATATTGTG GCATATAAAT
ATATGTTTTT ATCTTGTCAG GAAAATGAAA GCTGAAAAAC AAGGGTATTT TTCCAAGGTT GGTAGAGAGT ATTGCTTTAC
AATCTTAGTT TAGTTACATA CTGCTGAAAT TAGTGAATGA CATTTCAACA CTCATTTATT GACCATGGTG CTCTTGATGT
AACCCTTCAT TTAATACTTA TGTATTGATG TATTTTTACA TTTCAATGTT TTGATGTATA TACTTGCATT TATCCTTTCT
CTCTCTATAT AGATATGTGT GTGTGTGTGA GCTCACAATG ATGAAGAAAG GTTCAACCTC TCATTGAGAA AAAAAGGAAC
TTCTCACTTA AAGAAAACTC TGATTTGTTT ATTTAATTTG TGTGTAGCTA ATAATGGAAT CGATACTAGT GAAATAGATA
GGATGGCACT GTAAATTTCA AGTATGCTCT GTTGCTGGTC TTTTCTTCGT CTATTCTCTG CCCTTTAATC CGGAGTAGGC
TTTTTACTTC AATAACAGAT AAAGGGAGTT AATGGTATGG TATGGCTCTT TAGCTAAACT TTTTTGTATT GTGAGCTCAT
GATATAAGAA ATATTATTGA CAACAGTGGT GTGGAAATTT TGTTGGGGGG CAAGCAGAGG GCGGGATTGC AGCAGGATTG
ATGGATTTTG GTGTATGTGG TGGCAAGTAG CCTCTTGATG TCCCATGAAA TATATATTAC CTGATGAAAT TCTGTCTCTA
AGGAAATTGT TCAATTTGTG AGGATGTATA TATGTGAACT ACACAAATGG TCTTGTAGGC CCATGTTTGA TTGGAAGTTA
GATCATTTTG TTTGTGGAGG TTTCTTTTGG TCTTTCTTTT ACCTTATCTG TACTTTATCT TCTTTTTTTT GGTACAATGG
AGGTTTGAAC ACCTTGGTTG AGGAACGAAG CTGAGCTTTA TGTTTGAGGT TGATGTTTCT TGTGGTGCAT TTTCATTGGT
CTGGTGAAGG ACTGGACCTC TGACAACATC ATTACATTCA AATCTTCTAG ACTTGGGCCC ATCCAGTTGG GCTTATCAGC
TCGTAGACAA GGACTTCTCT GGTCTATCTG TTATATTCAT GTGGATTACT GAAATACTAA ATTCTCCCCA GTAAATGGAA
TTTTCTTTTA TACAAAAGTT GGCTGAATCA TGGTCTGAGA TATGATTCTT TTTGAGCGTC ATTCTGAATA TAGTTAATAA
CTTTTCGTTT GTTAAATGTT GAAAACCCTG TCACATTTGG GTATATTGCA TCTGTGTCAG AGAGAGAGAG AGAGCAAAAC
ACTGTGTGAT GGCATCTAAG GTCATCAAAC CAAAATCTTC GTATATTGGT GCTATGCATT CTTGTCATCA TTAGTAAAGG
TGGCTTGAAT TTCTTCACCA CAATGTTAGT TTTTGGACAT GTTATCATCA TCAGTTTTTT CCTATCTTGA TAGGATGAGT
GGCGAAAAGG GCTCAAATGT TTAGGGGCCG ACACACTCCC AAAGTTAAGA AAGGTCATTG GTGGACTGCA GAAAGAGGTA
TTTTATTTTT CTGTTTTAAG TTACTTAGTG AAGTTTTCTT GTGTTCTTAT TAAGATTAAC CACTAAGGTT GTCATTCAAA
AAGAATTTTG GTGTAATTAT TTCTTGTGTC TTGTTTAGGT GATGGTACAA GAGTGCTTTG AAGATTTTTA TTCCTATGCA
TTTCACTACT GCCTGACGGG TAAAACCAGT ATTACTGGGA TTTCACTCTT ATTTTAGACT ACTTGTTCTA CATCACTGCT
TTCGAGTTCT TATATGTAAC TAACGTAAAT AATAATACTT TCAGAAGATA AGCAAAGGAG TGTAGATATT GAGACCATCT
GTGAGCTGTT GAATGTCGTT CTGAGATCTG ATTTCCCTAC TCAAGTTAAT TTATTAACTG AGTATCTAAA GGTAGTGTAG
GTTTTATATA ATAATAATAT GCTTGTCTGC CCTTTGCTTA AACTTTTTCA GTTGCATGTA ATGACTCTTA ATGACAACTT
TCAGTAATGT CCAGCAAATA TGCTAGATTG TGAAGGATAT TATACTTTTT TTTCTTGTAC TTAATTATTG TTCCACATTA
AAACTATAGC TATTTGATCA TATAAATTTG TTTTCTTGTA CTTTCATGAT CTAAAAGTAG TGTAAATTCT TGAAATATTT
TCCCATGGAG TTAAAACGAT GGTAATTTCC CTTGGTTATT CCTTGTATAT GATACACACT AAAGTTGTGT TGTTTAGGTG
GAAGATGTTG AAAAGACTTT TAATGTCCAT ACACATTAAA TTGTTTTCTG ATAGTTGAAA TGCTTATTTG ACAGGTTCAA
AATGACTACA GGGCACTAAA CATAGATCAC TGGAGAAATT TTTATCGGTT TTTTAAGGAG GTAATGCTGT TTTTATTCTT
TTTCTTACTT TGCCTTTAGG ATTTTATATC ATACGCATTT TTCACTTCTG GTTGAGTTTA CTATCTCTTT GTAAGGTTAA
TTTGATTATT TTATAAATAT TACGAAGCCC TTAGTAAGTT GTAAAAAATA AAAATAGTCA GTTAACGCTC GAGAGGAAAA
TATCTCTTGG AATATTAGTT TACATTTTCT TTCTATTTGA TATTTACTTT TATGGTGATA GCTAGGATTT TATGGATCGG
TTACTTTCTT CTATCAGTGA ACATAACATA CACCATTAGA AATCCAGTCG CAAAATTCAC AAGTCTCTTG ATTTTTGAAT
TGGGTTTACT TCATGCTACT CATCCTTTTC CCCTTTTAAT TGTTAAACAA ACACAAGTTC GTCTTGTTTA TACTCATTAC
TGGTGTAAAC GAGTCAGAGT TAAACCAAAT TCGTAGTTGA CTTGATTTAA ACAATTCACA GTTAAAGCTT CTTAATTTAA
ACAGTTCACA GTTAAAGATT AGGGTTGACT AGTTCAAAAT ATGTCGTTTG CTTACCTATT TTATACCTTG ATTATCTTCT
TATCCATTGA TCAATTCAAA GATCTTATTT TAATTTGGAA AATGATTCTT TGACACACCT AAATATTTTA CATTCATTTG
ACACTATCCT TATTTACTGT TTACTCTCTT TTTTTTTTTT AAAAAATATA AAACTTTACA CCTTTATGAT CATTTTATCA
AATGAATGTA AAAGTGTCTC ATAGTACATT ACTCTTTTGA TTTTTAATTT GGTATATAAT AGGCATTTCC ACTTTCAGAA
TAAGGAAGAG AAAGAGTGCA AAAAAAATTT GAACATAGAA ATCAGGTATT ATAACTGGTC TTGCTAACCA GTGAACTAAG
GAAGGCAGGG CATTGATTAA AAAACTTTTA TAAATCAAAT AGAAGGATAA CAAACTTTTA TTAGAAATGA CATTGGTTCA
AACGAGGTGT GCCAATTGCT TTAACGAGTT TAATTCAAAT CATTCAAGAA AAACTCAACC CATCCGTTTG CATGTGGTCA
ACGGCTGTAG GGATAACGTC TAATTATCCA TGTGTATGAA TTGTACGCTA GTACATTTGA TGGGTAAAAT TTGGTGTACT
TCATATTTAA AACTCGCAAG CAGAAAAATA TGTCTGACGT TTTGTTGGTG GCAGGTAAGT CTCAGTGATC TTCTAAGTTA
TGATTCCAGT CAAGCATGGC CCGTGATCCT CGACAATTTT GTTGAATGGT TAAAAGAAAA ACAAGAGAAA ATATAGTTCT
CACCTTTCTC AAGTTTATGT TCATTTTTAA TCTGCCGACT CCGAACGAGA ATACTGTTTT GAAGCGGATA TACAATTGTA
TATGGCTGAT CTGAGTAATC AGTTCGCAGT TTTTCTGCAT GTAACAACAA CTTCATACAT TGTCAACTGT CAAAGTTATA
TTCACTTTTC TTCATCTGGA TATACTGTTT TAAGCAAATT TTGTTTCAGT TGCCAAAGTT CCTGAATCTT TTATCCATTT

>Vigan.01G418700.01
CAAAAGTTAT GACAAAGTGA TTTCAATTAA CTCACAATCT AATAATTAAG TTCATACAAT TAATTCCCAA AGGGAAAAAA
AAGATTGATG GAAGGAGCAC TAATTCCAAA GCTATAAAAC CTTGTTAAAC CTTGAATCTG TGCTGGTTTC TCTTCGTCAT
CATCCTCCGT GAATAGGGTT TACTTTCTTG AATTTCTTTC GAATCGATTC CATTGTGTCT CTCAAAGATT TGACAGTGTT
TGGTTGCACA ATCTGTGAAG ATGCCTCGTC CCAAAAGAAA AGCGGCCCCA CCAATCACTT CTTCTGATGT TGATTCTTCT
CTTCGTCCCG AACCAAAGAA AGCAACCACA AAGCAATTAG ATCGAATAGA TAACATATTC GAATCGTATG CAAATAAGTC
ACTGGGTTTG ATTGACCCAG ACGGGATTGT GGCATTTTGT AAAGATGTGC ATGTGGATCA TACAGATGTT AGAATGCTGA
TACTTGCTTG GAAAATGAAA GCTGAAAAAC AAGGGTATTT TTCCAAGGAT GAGTGGCGAA AAGGGCTCAA ATGTTTAGGG
GCCGACACAC TCCCAAAGTT AAGAAAGGTC ATTGGTGGAC TGCAGAAAGA GGTGATGGTA CAAGAGTGCT TTGAAGATTT
TTATTCCTAT GCATTTCACT ACTGCCTGAC GGAAGATAAG CAAAGGAGTG TAGATATTGA GACCATCTGT GAGCTGTTGA
ATGTCGTTCT GAGATCTGAT TTCCCTACTC AAGTTAATTT ATTAACTGAG TATCTAAAGG TTCAAAATGA CTACAGGGCA
CTAAACATAG ATCACTGGAG AAATTTTTAT CGGTTTTTTA AGGAGGTAAG TCTCAGTGAT CTTCTAAGTT ATGATTCCAG
TCAAGCATGG CCCGTGATCC TCGACAATTT TGTTGAATGG TTAAAAGAAA AACAAGAGAA AATATAGTTC TCACCTTTCT
CAAGTTTATG TTCATTTTTA ATCTGCCGAC TCCGAACGAG AATACTGTTT TGAAGCGGAT ATACAATTGT ATATGGCTGA
TCTGAGTAAT CAGTTCGCAG TTTTTCTGCA TGTAACAACA ACTTCATACA TTGTCAACTG TCAAAGTTAT ATTCACTTTT
CTTCATCTGG ATATACTGTT TTAAGCAAAT TTTGTTTCAG TTGCCAAAGT TCCTGAATCT TTTATCCATT T

>Vigan.01G418700.01
ATGCCTCGTC CCAAAAGAAA AGCGGCCCCA CCAATCACTT CTTCTGATGT TGATTCTTCT CTTCGTCCCG AACCAAAGAA
AGCAACCACA AAGCAATTAG ATCGAATAGA TAACATATTC GAATCGTATG CAAATAAGTC ACTGGGTTTG ATTGACCCAG
ACGGGATTGT GGCATTTTGT AAAGATGTGC ATGTGGATCA TACAGATGTT AGAATGCTGA TACTTGCTTG GAAAATGAAA
GCTGAAAAAC AAGGGTATTT TTCCAAGGAT GAGTGGCGAA AAGGGCTCAA ATGTTTAGGG GCCGACACAC TCCCAAAGTT
AAGAAAGGTC ATTGGTGGAC TGCAGAAAGA GGTGATGGTA CAAGAGTGCT TTGAAGATTT TTATTCCTAT GCATTTCACT
ACTGCCTGAC GGAAGATAAG CAAAGGAGTG TAGATATTGA GACCATCTGT GAGCTGTTGA ATGTCGTTCT GAGATCTGAT
TTCCCTACTC AAGTTAATTT ATTAACTGAG TATCTAAAGG TTCAAAATGA CTACAGGGCA CTAAACATAG ATCACTGGAG
AAATTTTTAT CGGTTTTTTA AGGAGGTAAG TCTCAGTGAT CTTCTAAGTT ATGATTCCAG TCAAGCATGG CCCGTGATCC
TCGACAATTT TGTTGAATGG TTAAAAGAAA AACAAGAGAA AATATAG

>Vigan.01G418700.01
MPRPKRKAAP PITSSDVDSS LRPEPKKATT KQLDRIDNIF ESYANKSLGL IDPDGIVAFC KDVHVDHTDV RMLILAWKMK
AEKQGYFSKD EWRKGLKCLG ADTLPKLRKV IGGLQKEVMV QECFEDFYSY AFHYCLTEDK QRSVDIETIC ELLNVVLRSD
FPTQVNLLTE YLKVQNDYRA LNIDHWRNFY RFFKEVSLSD LLSYDSSQAW PVILDNFVEW LKEKQEKI*