Variant information

Chr01:55393389 - 55399628

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 [SNPs] [Indels]

SNPs

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
55393466GT542094.771.00DOWNSTREAM(|2301||None|Vigan.01G418600.01), DOWNSTREAM(|4935||None|Vigan.01G418500.01), UTR_3_PRIME(|167||None|Vigan.01G418700.01)Vigna nepalensis
55394162GA652634.771.00DOWNSTREAM(|2997||None|Vigan.01G418600.01), INTRON(|||None|Vigan.01G418700.01)Vigna nepalensis
55394230AC763338.771.00DOWNSTREAM(|3065||None|Vigan.01G418600.01), INTRON(|||None|Vigan.01G418700.01)Vigna nepalensis
55394233AG733518.771.00DOWNSTREAM(|3068||None|Vigan.01G418600.01), INTRON(|||None|Vigan.01G418700.01)Vigna nepalensis
55394250CA753551.771.00DOWNSTREAM(|3085||None|Vigan.01G418600.01), INTRON(|||None|Vigan.01G418700.01)Vigna nepalensis
55394251AT773595.771.00DOWNSTREAM(|3086||None|Vigan.01G418600.01), INTRON(|||None|Vigan.01G418700.01)Vigna nepalensis
55394265GA833642.771.00DOWNSTREAM(|3100||None|Vigan.01G418600.01), INTRON(|||None|Vigan.01G418700.01)Vigna nepalensis
55395623GT481923.771.00DOWNSTREAM(|4458||None|Vigan.01G418600.01), NON_SYNONYMOUS_CODING(MISSENSE|caC/caA|H133Q|None|Vigan.01G418700.01)Vigna nepalensis
55395993AT521976.771.00DOWNSTREAM(|4828||None|Vigan.01G418600.01), INTRON(|||None|Vigan.01G418700.01)Vigna nepalensis
55396618AC341391.771.00INTRON(|||None|Vigan.01G418700.01)Vigna nepalensis
55396856TC451742.771.00INTRON(|||None|Vigan.01G418700.01)Vigna nepalensis
55397366CA501953.771.00INTRON(|||None|Vigan.01G418700.01), UPSTREAM(|4969||None|Vigan.01G418800.01)Vigna nepalensis
55397712AG18731.771.00INTRON(|||None|Vigan.01G418700.01), UPSTREAM(|4623||None|Vigan.01G418800.01)Vigna nepalensis
55397980GC683025.771.00INTRON(|||None|Vigan.01G418700.01), UPSTREAM(|4355||None|Vigan.01G418800.01)Vigna nepalensis
55398004CA663202.771.00INTRON(|||None|Vigan.01G418700.01), UPSTREAM(|4331||None|Vigan.01G418800.01)Vigna nepalensis
55398024AG672986.771.00INTRON(|||None|Vigan.01G418700.01), UPSTREAM(|4311||None|Vigan.01G418800.01)Vigna nepalensis
55398029GA652909.771.00INTRON(|||None|Vigan.01G418700.01), UPSTREAM(|4306||None|Vigan.01G418800.01)Vigna nepalensis
55398244CT622313.771.00INTRON(|||None|Vigan.01G418700.01), UPSTREAM(|4091||None|Vigan.01G418800.01)Vigna nepalensis
55398538AG572154.771.00INTRON(|||None|Vigan.01G418700.01), UPSTREAM(|3797||None|Vigan.01G418800.01)Vigna nepalensis
55399093AG562227.771.00INTRON(|||None|Vigan.01G418700.01), UPSTREAM(|3242||None|Vigan.01G418800.01)Vigna nepalensis
55399120AG482189.771.00INTRON(|||None|Vigan.01G418700.01), UPSTREAM(|3215||None|Vigan.01G418800.01)Vigna nepalensis
55399122AG492189.771.00INTRON(|||None|Vigan.01G418700.01), UPSTREAM(|3213||None|Vigan.01G418800.01)Vigna nepalensis
55399175CT431592.771.00INTRON(|||None|Vigan.01G418700.01), UPSTREAM(|3160||None|Vigan.01G418800.01)Vigna nepalensis
55399198AC441931.771.00INTRON(|||None|Vigan.01G418700.01), UPSTREAM(|3137||None|Vigan.01G418800.01)Vigna nepalensis
55399230TC441723.771.00INTRON(|||None|Vigan.01G418700.01), UPSTREAM(|3105||None|Vigan.01G418800.01)Vigna nepalensis
55399555CT411330.771.00UPSTREAM(|2780||None|Vigan.01G418800.01), UTR_5_PRIME(|187||None|Vigan.01G418700.01)Vigna nepalensis
55399628GC592389.771.00UPSTREAM(|2707||None|Vigan.01G418800.01), UTR_5_PRIME(|260||None|Vigan.01G418700.01)Vigna nepalensis

Indels

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
55393509AATGGGATTAATTC532607.731.00DOWNSTREAM(|2345||None|Vigan.01G418600.01), DOWNSTREAM(|4979||None|Vigan.01G418500.01), UTR_3_PRIME(|123||None|Vigan.01G418700.01)Vigna nepalensis
55394228TAT743329.731.00DOWNSTREAM(|3064||None|Vigan.01G418600.01), INTRON(|||None|Vigan.01G418700.01)Vigna nepalensis
55394338ATCA783453.731.00DOWNSTREAM(|3174||None|Vigan.01G418600.01), INTRON(|||None|Vigan.01G418700.01)Vigna nepalensis
55396606CAC401559.731.00INTRON(|||None|Vigan.01G418700.01)Vigna nepalensis
55397039TTCA431412.730.95INTRON(|||None|Vigan.01G418700.01)Vigna nepalensis
55399188CAAAC401787.731.00INTRON(|||None|Vigan.01G418700.01), UPSTREAM(|3146||None|Vigan.01G418800.01)Vigna nepalensis
55399201TTA441930.731.00INTRON(|||None|Vigan.01G418700.01), UPSTREAM(|3133||None|Vigan.01G418800.01)Vigna nepalensis
55399546CCTT421943.731.00UPSTREAM(|2788||None|Vigan.01G418800.01), UTR_5_PRIME(|179||None|Vigan.01G418700.01)Vigna nepalensis