GBrowse Details

Vigan.01G415400.01

Basic Information:
Name: Vigan.01G415400.01
Multiple alignment
Variant Information
Position: Chr01:55146128..55151919 (- strand)
Length: 5792
Functional Information:
Description: Similar to Uncharacterized protein. [I1JGN9, Glycine max]
GO: Biological Process: lipid metabolic process (GO:0006629)
InterPro: Fatty acid desaturase, type 1 (IPR005804)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:36.70,19.97,14.14,84.58,13.32,8.48,16.08,16.51
Arabidopsis thaliana homolog: AT4G30950.1
Automatic updates:
Name: NM_001251307 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max plastid omega-6 desaturase (LOC547807), mRNA.
PubMed ID: 8066133 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr01:55146128..55146635 (- strand)
Length: 508
Type: three_prime_UTR
Position: Chr01:55146636..55146797 (- strand)
Length: 162
Type: CDS
Position: Chr01:55147116..55147230 (- strand)
Length: 115
Type: CDS
Position: Chr01:55147489..55147607 (- strand)
Length: 119
Type: CDS
Position: Chr01:55148852..55149029 (- strand)
Length: 178
Type: CDS
Position: Chr01:55149204..55149326 (- strand)
Length: 123
Type: CDS
Position: Chr01:55150234..55150385 (- strand)
Length: 152
Type: CDS
Position: Chr01:55150504..55150647 (- strand)
Length: 144
Type: CDS
Position: Chr01:55150924..55151165 (- strand)
Length: 242
Type: CDS
Position: Chr01:55151498..55151552 (- strand)
Length: 55
Type: CDS
Position: Chr01:55151630..55151668 (- strand)
Length: 39
Type: CDS
Position: Chr01:55151669..55151919 (- strand)
Length: 251
Type: five_prime_UTR

>Vigan.01G415400.01 class=Sequence position=Chr01:55146128..55151919 (- strand)
ATTTGCACAT GAAAAAATAT AATAAATAAA AATGTAAACA AAAAGGCGAG GAGGAAATGG TGCAGTGGAC GGAGAAGAAA
CGACACCGTC CAATACATAC ATGCGGCTGC GAAGGTCTAT TAAAGGAAGT CCACATTCTG AGGGTCCCAC GCTCTCACAC
ACTTTAACAT ATAAAATAGA ACAGCAAAAG CTTTATCTCT TTCGAAGCCC CAAAATCCTC TTTTGTGAGC TCAGATTAAT
CTGTGCTCAC AATGGCCTGC ACTCTCGCTG ATTCATTACT CCTATTCAAG GTTTTCCATT ACTGTTCTTC TTCCTTTTTC
TCTCGAGCGT GTTTCGACTT TCAAGCAAAT ATGGTTTCAT TTTTCAGGGC TCTTTTCAGA AACCACTTTG CAGGAGAGAC
ATTACTGCTC ACTACTCTCC AGGTATGCAT CTTCTTCCCT TACCGTAATT CAATTTACTG TTCCATGTCG CAATTTAAAG
ATATTGGAAA TGGACCAATT CGATCATAAG ATATCAAGAA CAATCATCAT CGCAAATACT TCACTCGAAT AGGATTATCT
CCGGTGAATA TCTACCATTG CCTGGTGGTA TCAATGATCA GTGTCACTTA GTCATGAAAT TCGAGAGTTA TCCTTTGATG
AGTTGGGCTG GAGCCTGTAA GATGCCATTA TGCTTAACTT TTCATAGGCA TGAACATGAC TGGTGTGTGG AATGGGTGCA
TTTTAACTAA TTTTTTGTCA TTCTTCTACC ACAGGAATAT TTAGTTTAAA CAGTGATGGG CTTATCCGGA AAGGGTTCAG
GCGTCAAAGG AGTTTTGTTA CTAGGAATAA GGTTACTTTC ATACGTGCTG TGGCAGTTCC AGTACAACAA CCTGCTCCTG
TGGAAGATGT GGAGTATAGA AAACAGCTAG CTGAAGACTA CGGTTTCAGG CAAATTGGAG AGCCGCTTCC AGCTGATGTT
ACTTTAAAGG ATGTCATCAG TTCCCTTCCT AAAGAGGTGC TTTACTTTTA CTATTATTAT TGTTGTTATT GTTATTATTA
TTATTTAGAT CGATGTCATG CTTTATAGCA ACATCATTAA ACAGGACTTT TGCGTTTAAT TCTAATAAGT GGAGTCAGCT
CTTAAAAAAT TTATGTTTTT CAGTGAAATA TTTGCTCATG CGCTTAAAAT ACCGTTCATT GTTGCATGTA AGTTTATAAT
AAAACATCAA TAATAGCCGT GATATTTTCT GCACACTATG AGAAATATAA ATTGTCTTAC AATTTTTTGC AGGTCTTTGA
GATTGATGAT GTGAAAGCAT GGAAATCTGT TTTGATATCT ATCACTTCTT ATGCATTGGG GATCTTCATG ATTTCCAAAG
CTCCCTGGTA TCTTCTTCCT CTCGCTTGGG CATGGACTGG GACTGCAGTA ACTGGGGTTA GTTATAATTT TATTTCTTAC
CGGTATCTCA AATCCTACTC AACCATATCT CTTAAGAACT TGGCCAAAGT TTTTGCTTAT GTTTTGTAAT CCTCTTTCCT
TTTTTGTCAT ATAGTTCTTT GTTATAGGAC ATGATTGTGC TCACAAATCA TTTTCATCCA ACAAATTGAT AGAAGACATT
GTTGGGACCC TGGCTTTTAT GCTACTGATT TATCCATATG AGCCATGGCG ATTTAAGCAT GACAAACATC ATGCAAAAAC
AAACATGTAA GCAGTTTGTG TTTTCTTCGA TTTTTGTTTT TTTATTTTTT TGTATTTTCT ATTTTATAAG TGCATCTTGT
ATGTGGACTG CGGAGGGACT GATTAATATT TTTATTTAAT ATGCGGTGGA AAACATGCTT TTTAGTCCTC AAATCCACCC
TTGTTATTTT ATATTTGAGT AGGTTAGTCA AAGAATAATA TATGTTCTGC TTAAAACTGA TATTGGGATA ATGCATCATT
CTGTTGTACA TTATAGTTAT TTTTTCCAGT ATAAATTCAC GCTCTGTGCA CCAGATTTAC TCAAAGTCAA ATGGCACCAA
TACTGAAAGG ATAAAATACA GGCTATATAT GACATGCATA ATGCACTGTA AGAGACTCAA TGGTAACATA TGTTATTAAT
AAAAATCCTG CACCTTGGTT TATGTACATG ATGCACACGT ACGCATTATT GAAACTCTTT TGTCTCTGAC AGATAGACCT
TGGAAAGTGT ATATCTGAAG GAATAAGAAT TAAACTGAGA CTCAGTAGGC CAGAATTATT AGTGTTTGTG TTGTAATTTG
TCTTCAGGCA ACTATTTAGG CAGTTATGGA TCTGAATTCT TATTTTTGTG CGGTATTCTG TCATGGGTTG AATGTTTTGA
TAGTTAGTGT GTGTGTGATG TATGGGGCTT CGGGTGGTTA TATTCGTTGG AAAGTTTCAC TAATTGCTAG ATATCGAAGG
AGGAAACTCC TTGCTGAAGG AAAACCCTCT GTTGTCTGTC TTCTATGGTG ATGCTGGCCT GAAACTAGAA AGTTTCCAGT
AATAAATACA TAATTCAGTA TGCTTATTTC TGAGTTTAAC TGTCTCACGC AGAATCAGTA GCTTCACTGT TTCATTACTT
TAATATAACT GTAAGCCATT TATAATGGTA CAGGCTGTTG GAAGATACTG CTTGGCAGCC TGTTGCGAAG GACGAGTTTG
AATCTTCTCC CCTTTTGAGG AAAGCAATAA TATATGGATA TGGTCCATTT CGATGTTGGA TGTCTATAGC TCACTGGTAT
GAGCATATAA TGAAATCATT TATGATTTAT TCTTTAAGGT CAACTATGCC TTGAAATATC TTTGTGCAGT TCCTAAAGTC
CTGCTTCATT AGCTAAAAGT GCCTTGAATT CGTATTTAAT TACCTTTAGT TTTAAATCAA ATCTTGATAT GGGGGTGCAT
TCTAACTCAG GTTGATGTGG CACTTTGATT TGAAGAAGTT CAGACCAAGT GAAGTAAACA GGGTGAAGAT AAGTTTAGCG
TGTGTGTTTT CCTTTATAGC AATTGGGTGG CCATTAATCA TTTACAAGAC AGGAATCATG GGATGGATAA AATTCTGGTT
GATGCCATGG TTGGGCTATC ACTTCTGGGT AATTTCATTT CTATATTGTA AATTCATTCT TTGCTCAACA CTGTTGGCTC
CAATGTTTTG TTTCTTTTTG TTTGGATTGG TAGTAATGAG TTGCTGCATA TTTAGGCAGG ATATTGTTGA AGTCATTTTT
AGTAATCAGG AAGTGGGTTA AACTTTTTGA TTTATGTTAA CCAACCTCCA CCTATGGTCT TATTGTCAGC CTGAAGCCTG
AAGAAGGAAG GCTCTAGACC TTGGCCATCC AATGTAAAAC TTGTTGAATC TTAAAAATTA GTCGCTCATG ATAGATTAAT
TTATAATAGA GTCCTATAAC ATCATATAAT TGATTTAGCC AGCCTCCCTT ATGTATGATA AGGTTTTTAT TCTTGTTCTG
CTGGTGTTGG TTGGTAGTTA GTCCTAAACT TGAATTTGGA TATAAAACAG CTCGTAACCT TATGTTTAGG GACTGGAAAA
AATATCCTTT GTTGTATTTG TATGCTGCCA GAAAGCTGAG ACCAATGTCA TTGTTTTAGA CTTATATTAT AGCCAGGGAT
TGATGGGATC GTGGGAGGGG GTCCATTAAG GTCCTGGGCT TATAACCATG GCTCTACACT TATATTTTCT ATTATATTGT
ACCTGGGATT ATTTTATGCA AATGAAAATT TGCATGTGGA GTCTCTGACT CGTCTTTAAT CGATTGAAAT GTTAATTTAC
ATACAGGTTG TTATTTTTAT ATTGAGAGAT CTTATTAAAG TAATAATTTG AAAAGAAGTC TGTAATATTC ACGTCAGTGA
TGAAGATACA TTTTCAGTAT AAACCTGGAT GAGAATACAG TATAGTAAAA TATTGAACAA CCCACCACTA ATGCCTATTC
GACAAAGTAA AATGGAGCTT GGTTCCTGTT AAAGAGATTT GACTTTGAAG TATTGTGAAT GAGAAAAAAA GGGGAAACTA
GGAGAACTCT GGCCCCTTAG ATAGTTCTAC ATGGCTCAAC TGAACTTGTT TAAGGTCCAA TGTCACTTTT GGATACCGAG
GGTCTAACAC AAAAAACCGA AGGTATTATA CAACTCAAGG TACTGAATGA TAATATTTAA TTAATAGCCA GAGTACAAAA
TCAACTTCCC CCTTCAGTGA AACCTTTTAT GACGATTTTA TTGTGGGTGA ATTTTGTTGA TATAATCAAT ACTCTTGCCA
TGTCTCTTTC GAGTTCAAAG TTATACTTAC AACAAGATTC ACACTATCTA TTTATTTTTC TGGCGATCAC AGATGAGTAC
GTTTACCATG GTACATCATA CTGCGCCGCA TATTCCATTC AGAAACACAG AAGAGTGGAA TGCTGCACAA GCACAGCTTA
ATGGAACTGT TCATTGTGAT TACCCTAAAT GGTAATGGAT TCTTTTTGTT TCTTTCTTTA GTAATGTACG TTTTTCTGGT
CTGTAAATGG AGGTGGAATA TACTGCATAA TTGATGAGTT GCTGCCGAAT GCTTTATCTG AAAATGATTG TTCTTTGATT
ACGTGAATAA TTTTTAAGAA TTTACTCATC TTGTCAATTT GTCTGAAATG CAGGTTTGCA AAATGAACTT GATAGCATTA
GCATTAACTA AAAGCTATTT ATTGAATTTA TTTATTTTTT TCTAAACAGG ATCGAGATCC TATGTCATGA TATTAATGTC
CATATTCCAC ACCACATATC CCCGAGGATA CCAAGCTATA ATTTAAGAGC AGCCCATAAG TCCATCGAAG AAAATTGGGG
AAAGGTAAGA TAGAAAATTG CCAATATATT TTCTTTGTTC CTGTATTGGA ACGAGGGCCA CTCTTCTACT GTTTTTTAAA
AATATACTAC CATATTGTTA TCATATTAGT AATGGGTTTT TTTATTTCCT ATTTAATGAA AATGAATTTG TTAGAATATT
CTCTTTGCCA CTGAAACTTA TTGTAGACGT AGTCCAAATA AAAGATTTGG AAGCTTTGTT TATTCCAATA GTACAATTGT
CTCGAATATA AGTGTAAAAT TTCTCAAAGG AAATATCGTC GTTGCTCATT ATTTCTATTT TGTTTTTGTG TTGGATCGGC
AGTATCTGAA TGAGGCTAGT TGGAATTGGA GATTGATGAA GACAATCATG ACAGTGTGTC ATGTGTACGA TAAAGAGCAA
AATTATGTTG CCTTCGACGA ACTCGCCCCT GAAGATTCTC GTCCAATTAC ATTTTTGAAG GAAAGCATGC CTGATTATGC
TTAGTTTAGT CCATCCAACC TGCCTTTTTT CTCATGTAAT TTTTTATTTA TCAAATTAGG TTCCTATGCC ATCGGTTTTC
TGTTCACGTT TTCGATCTTG TTTAAAATGG TTATTTTTTC ATATCTGGTT TAGTAAGAAA ATTGCTTGTT GCTCTCGAAG
TTCACACGTA ATAGGGTAAT GATGTTACCA AGTTGCGGAT TATCCGCCAA GCCACCGAGA AGCATTCATT AAGTTAAAGC
AGACGTTGTG GTAATCTGAA CACTGGGGTT CTTGTTATCA CGTGGGAAGA ATAATATACT ATAAAGTTGT CTGACGGATC
AAAAAGCACG TGGACCGTGG CACAGTGGTT TGAGCCTACT GAGTTACTGC TGTAATGACA GTATTTTGTT ATTCATTATT
GCTCTTTTGG TTGTATTGTA TTTTGTTACT GAAATTCATG TATACAGTTT CTCGCTAAAA AAAGAATATA CAGAGTCTTT
TCATCTAATG GAAACTTCAT ATTTAACCAT AA

>Vigan.01G415400.01
ATTTGCACAT GAAAAAATAT AATAAATAAA AATGTAAACA AAAAGGCGAG GAGGAAATGG TGCAGTGGAC GGAGAAGAAA
CGACACCGTC CAATACATAC ATGCGGCTGC GAAGGTCTAT TAAAGGAAGT CCACATTCTG AGGGTCCCAC GCTCTCACAC
ACTTTAACAT ATAAAATAGA ACAGCAAAAG CTTTATCTCT TTCGAAGCCC CAAAATCCTC TTTTGTGAGC TCAGATTAAT
CTGTGCTCAC AATGGCCTGC ACTCTCGCTG ATTCATTACT CCTATTCAAG GGCTCTTTTC AGAAACCACT TTGCAGGAGA
GACATTACTG CTCACTACTC TCCAGGAATA TTTAGTTTAA ACAGTGATGG GCTTATCCGG AAAGGGTTCA GGCGTCAAAG
GAGTTTTGTT ACTAGGAATA AGGTTACTTT CATACGTGCT GTGGCAGTTC CAGTACAACA ACCTGCTCCT GTGGAAGATG
TGGAGTATAG AAAACAGCTA GCTGAAGACT ACGGTTTCAG GCAAATTGGA GAGCCGCTTC CAGCTGATGT TACTTTAAAG
GATGTCATCA GTTCCCTTCC TAAAGAGGTC TTTGAGATTG ATGATGTGAA AGCATGGAAA TCTGTTTTGA TATCTATCAC
TTCTTATGCA TTGGGGATCT TCATGATTTC CAAAGCTCCC TGGTATCTTC TTCCTCTCGC TTGGGCATGG ACTGGGACTG
CAGTAACTGG GTTCTTTGTT ATAGGACATG ATTGTGCTCA CAAATCATTT TCATCCAACA AATTGATAGA AGACATTGTT
GGGACCCTGG CTTTTATGCT ACTGATTTAT CCATATGAGC CATGGCGATT TAAGCATGAC AAACATCATG CAAAAACAAA
CATGCTGTTG GAAGATACTG CTTGGCAGCC TGTTGCGAAG GACGAGTTTG AATCTTCTCC CCTTTTGAGG AAAGCAATAA
TATATGGATA TGGTCCATTT CGATGTTGGA TGTCTATAGC TCACTGGTTG ATGTGGCACT TTGATTTGAA GAAGTTCAGA
CCAAGTGAAG TAAACAGGGT GAAGATAAGT TTAGCGTGTG TGTTTTCCTT TATAGCAATT GGGTGGCCAT TAATCATTTA
CAAGACAGGA ATCATGGGAT GGATAAAATT CTGGTTGATG CCATGGTTGG GCTATCACTT CTGGATGAGT ACGTTTACCA
TGGTACATCA TACTGCGCCG CATATTCCAT TCAGAAACAC AGAAGAGTGG AATGCTGCAC AAGCACAGCT TAATGGAACT
GTTCATTGTG ATTACCCTAA ATGGATCGAG ATCCTATGTC ATGATATTAA TGTCCATATT CCACACCACA TATCCCCGAG
GATACCAAGC TATAATTTAA GAGCAGCCCA TAAGTCCATC GAAGAAAATT GGGGAAAGTA TCTGAATGAG GCTAGTTGGA
ATTGGAGATT GATGAAGACA ATCATGACAG TGTGTCATGT GTACGATAAA GAGCAAAATT ATGTTGCCTT CGACGAACTC
GCCCCTGAAG ATTCTCGTCC AATTACATTT TTGAAGGAAA GCATGCCTGA TTATGCTTAG TTTAGTCCAT CCAACCTGCC
TTTTTTCTCA TGTAATTTTT TATTTATCAA ATTAGGTTCC TATGCCATCG GTTTTCTGTT CACGTTTTCG ATCTTGTTTA
AAATGGTTAT TTTTTCATAT CTGGTTTAGT AAGAAAATTG CTTGTTGCTC TCGAAGTTCA CACGTAATAG GGTAATGATG
TTACCAAGTT GCGGATTATC CGCCAAGCCA CCGAGAAGCA TTCATTAAGT TAAAGCAGAC GTTGTGGTAA TCTGAACACT
GGGGTTCTTG TTATCACGTG GGAAGAATAA TATACTATAA AGTTGTCTGA CGGATCAAAA AGCACGTGGA CCGTGGCACA
GTGGTTTGAG CCTACTGAGT TACTGCTGTA ATGACAGTAT TTTGTTATTC ATTATTGCTC TTTTGGTTGT ATTGTATTTT
GTTACTGAAA TTCATGTATA CAGTTTCTCG CTAAAAAAAG AATATACAGA GTCTTTTCAT CTAATGGAAA CTTCATATTT
AACCATAA

>Vigan.01G415400.01
ATGGCCTGCA CTCTCGCTGA TTCATTACTC CTATTCAAGG GCTCTTTTCA GAAACCACTT TGCAGGAGAG ACATTACTGC
TCACTACTCT CCAGGAATAT TTAGTTTAAA CAGTGATGGG CTTATCCGGA AAGGGTTCAG GCGTCAAAGG AGTTTTGTTA
CTAGGAATAA GGTTACTTTC ATACGTGCTG TGGCAGTTCC AGTACAACAA CCTGCTCCTG TGGAAGATGT GGAGTATAGA
AAACAGCTAG CTGAAGACTA CGGTTTCAGG CAAATTGGAG AGCCGCTTCC AGCTGATGTT ACTTTAAAGG ATGTCATCAG
TTCCCTTCCT AAAGAGGTCT TTGAGATTGA TGATGTGAAA GCATGGAAAT CTGTTTTGAT ATCTATCACT TCTTATGCAT
TGGGGATCTT CATGATTTCC AAAGCTCCCT GGTATCTTCT TCCTCTCGCT TGGGCATGGA CTGGGACTGC AGTAACTGGG
TTCTTTGTTA TAGGACATGA TTGTGCTCAC AAATCATTTT CATCCAACAA ATTGATAGAA GACATTGTTG GGACCCTGGC
TTTTATGCTA CTGATTTATC CATATGAGCC ATGGCGATTT AAGCATGACA AACATCATGC AAAAACAAAC ATGCTGTTGG
AAGATACTGC TTGGCAGCCT GTTGCGAAGG ACGAGTTTGA ATCTTCTCCC CTTTTGAGGA AAGCAATAAT ATATGGATAT
GGTCCATTTC GATGTTGGAT GTCTATAGCT CACTGGTTGA TGTGGCACTT TGATTTGAAG AAGTTCAGAC CAAGTGAAGT
AAACAGGGTG AAGATAAGTT TAGCGTGTGT GTTTTCCTTT ATAGCAATTG GGTGGCCATT AATCATTTAC AAGACAGGAA
TCATGGGATG GATAAAATTC TGGTTGATGC CATGGTTGGG CTATCACTTC TGGATGAGTA CGTTTACCAT GGTACATCAT
ACTGCGCCGC ATATTCCATT CAGAAACACA GAAGAGTGGA ATGCTGCACA AGCACAGCTT AATGGAACTG TTCATTGTGA
TTACCCTAAA TGGATCGAGA TCCTATGTCA TGATATTAAT GTCCATATTC CACACCACAT ATCCCCGAGG ATACCAAGCT
ATAATTTAAG AGCAGCCCAT AAGTCCATCG AAGAAAATTG GGGAAAGTAT CTGAATGAGG CTAGTTGGAA TTGGAGATTG
ATGAAGACAA TCATGACAGT GTGTCATGTG TACGATAAAG AGCAAAATTA TGTTGCCTTC GACGAACTCG CCCCTGAAGA
TTCTCGTCCA ATTACATTTT TGAAGGAAAG CATGCCTGAT TATGCTTAG

>Vigan.01G415400.01
MACTLADSLL LFKGSFQKPL CRRDITAHYS PGIFSLNSDG LIRKGFRRQR SFVTRNKVTF IRAVAVPVQQ PAPVEDVEYR
KQLAEDYGFR QIGEPLPADV TLKDVISSLP KEVFEIDDVK AWKSVLISIT SYALGIFMIS KAPWYLLPLA WAWTGTAVTG
FFVIGHDCAH KSFSSNKLIE DIVGTLAFML LIYPYEPWRF KHDKHHAKTN MLLEDTAWQP VAKDEFESSP LLRKAIIYGY
GPFRCWMSIA HWLMWHFDLK KFRPSEVNRV KISLACVFSF IAIGWPLIIY KTGIMGWIKF WLMPWLGYHF WMSTFTMVHH
TAPHIPFRNT EEWNAAQAQL NGTVHCDYPK WIEILCHDIN VHIPHHISPR IPSYNLRAAH KSIEENWGKY LNEASWNWRL
MKTIMTVCHV YDKEQNYVAF DELAPEDSRP ITFLKESMPD YA*