GBrowse Details

Vigan.01G411100.01

Basic Information:
Name: Vigan.01G411100.01
Multiple alignment
Variant Information
Position: Chr01:54831194..54834340 (+ strand)
Length: 3147
Functional Information:
Description: Similar to 50S ribosomal protein L35. [I1JGS8, Glycine max]
GO: Biological Process: translation (GO:0006412)
Cellular Component: intracellular (GO:0005622)
Cellular Component: ribosome (GO:0005840)
Molecular Function: structural constituent of ribosome (GO:0003735)
InterPro: Ribosomal protein L35, non-mitochondrial (IPR001706)
Ribosomal protein L35, conserved site (IPR018265)
Ribosomal protein L35 (IPR021137)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:26.88,21.11,40.09,182.50,17.07,70.17,32.67,30.31
Arabidopsis thaliana homolog: AT2G24090.1
Structure :
Position: Chr01:54831194..54831365 (+ strand)
Length: 172
Type: five_prime_UTR
Position: Chr01:54831366..54831614 (+ strand)
Length: 249
Type: CDS
Position: Chr01:54831696..54831812 (+ strand)
Length: 117
Type: CDS
Position: Chr01:54833898..54833975 (+ strand)
Length: 78
Type: CDS
Position: Chr01:54833976..54834340 (+ strand)
Length: 365
Type: three_prime_UTR

>Vigan.01G411100.01 class=Sequence position=Chr01:54831194..54834340 (+ strand)
GTAAAAAAGC AAACTTAAAA AATGAAAAGA AATTGTGATG AGGTGAATGT GAGGGAGAAA AATTAGAGGA CAAGAGCTAG
CTCTCTCTGG CTGCATAGGC AGTTAGCACC TCAGCTTTAT CCATAGACCA GAAGTTTGGG TTAAACGAAG CTGAGCTCAC
CTCACACTGA AGATGGCTAC CGTGTCGTTG GGCTTGGGAA TTTTACCTTG CGCTTCTTCT TCTTATTCAA TTCGTCTCTC
TTACACTTCA GTTCGATTCC CTACATCCAA CAACGCAAAC TCCCTCAACC TTAGTTCTTC AGCTTCCATC TCCGCCCCAC
TTCTTCGTCA AAAGCTCTGC ACAACTCCTT CTCCTCTCCC TCCAACCCTT CGCCCTCTCA CCATTGTATC CGCTAAGGGC
TACAAAATGA AAACCCACAA GGTCTCTTTC TCTCTCTCTT TCTCTATTTT TCCGACTTCA TTCGGGTTTT TCGAAATTGA
ATTTGGTTAA TGGATGATAA AGGCATCGGC AAAGCGGTTT AGGGTCACGG GGCGAGGCAA AATTGTTCGT AGGAGAGCTG
GCAAGCAGCA TTTGCTTGTC AAGAAGAACA CCAAGCGCAA ATTACGACTC TCCAAAATGG TTAGATTATG TTTATGGCAT
TATCATCCTC TCTATTTTCT CCTTGCTTAA CCTAATCAAG TCAATGTTCC CAGCGCACTT TTTGTTACCC GGTTTTGGTG
AATTGTCTAG GCGTGATGGA TTTTGTGGTG GCCAATGACT GCTTTGATTG TTCTACAGTT GCCTTTGGGG CTTGGTTGTG
CATTTTGTTA GATTTCCTTG TTTAGACTGC ATTTCATTAT AACTTGACAA CCTTAGTGTG CTTGCTAGTT TCTTTGCCGT
GGTGTTAATT ATGAGATAGA AGAACAGCGT TGCCTTTGGA GGGTCAATTC TGTCTTCTAA TCTGCTCTCC CATTTCACCA
GAACATAAAC TCAAGATTTG ATATATATTT GGATACTGTT TTCCATCAAT ACCTTAAAAA AAACCTTCTT CATAAACTAA
AATCGGCTTA GATGCATATA GATTAAAAAT CATCTTTTGG AAAAGTTTAT ATGAAAAGTA GAGAAGTCTG TGTTATTTTC
TTTCTTATTT CTTCTGTTAT AAGTGCTTTG AGAAAAAATT ATTCAAACAA ACTTTAAAAC TTCTTCCCTT ATGCATAGAA
AAAGTAAATG TGCAATGCAT AAGTAATGTT AGATTAAGGT TGTAGTTGAA CGGAAGTTTT TCACTTTCCA TTGCACAAAT
TAATACAACC ACACTTTAAG TGACTGATGT AGTTAAGACT GTTAAAAAAC AATTTGAATT GAACTAAATT GATATTCAAG
TGAATTTCAT AGAATCCTGA ATTGTTGTTA TTTTTAGTTT TCTTTAAAAA CTGAATAGTT CTTAAATAGA ATTACTTGAA
CTAAACTGAA CTACATCTTA TAAGATTGAA AATATGTTTT AAAATAAGAT ATTCATTGAT AATAATTCAA AATAGTTTAG
TTCGGCTCAG TTTCGTCAAA TTATATTGTC CAGTTTATTT CATCTGAACA ACTATACAGT TCAATCTAGT TTTTTTGAAC
AACTTTTAGA GTTCAATTTA GTTGATGCAT TTTGTTTATC CTTGTTTAAT GGATGCCATA TGATAGTTTG TTGCATTCAA
TGTCTTAATG TTGATACTTG AAAGCAATTT TTATCTTATT TTGGGAGAAA GAGCTTGCAA GAAATAACAA GTTAGAAAAT
ATTCAATTGA ACCTTCTCCC TCCTTTTCCT ATGAAATGTT AATCTATTCT TTTCTTAATG GTTTCTAATT TTGTGCAATT
CAACATTCAC CAATACCAAA TTCAAGTTTA GAATGCTTAT TTCTTGTCTC CTACATGTGG ACTTTGTCTG TAATGGGTTT
CTTCTGTCAG ATAATTATTG TAGAGTCCTA CTAATGAGTG ATTTAAGGGA ACTGGTTAAG GAATAATAAA AAGAAATTTG
TATAAGAAAT CATGATGGGG GCGAGGTTTG CATTCCTAAC ACTTCTCCGT AGAAGCTTTC CATATTTAAT TGTTTAATTA
ATGCCACTCA GCTGTTAGCA TTTTCGTCAT TGTTTGTATT AGGATCTGAA ATTTAATCTG TAGAGATGAT GTGAAAAACT
CTGCAATGGT ACAATTATTT TCAGATATAC CTGTTTGATT TTGAGGGATA TGTGTTGTGT ATAATTGAAA TTTGGAGATT
GTAACAGTTT TGAACTTGAT GTGTATGATG AACAAGCCTT TTGGAGCATC TGATATTCAA AACATGTCAT TGATCCTTTT
TTTATCCTCC AAGTTAGCAT AGCCAAAGTC TCAGTCATAT GTCACTGAAC TGCCTTGAGC AGTTTATTCC AAGTTGCATA
TATTCTGTGC TCATTTCAAA ATCCTAATTT AACTAAGCAT CCGTGATTTT CTTGTCCAAT ATCAACAAAC TATTTCAATT
TTATTTGATA ACTTAATGTG AATACAGCTA TGTATAACTT CTGCCTAATC TATATCTATC TCAACAGTAG TTGAATTTCT
AGAATGACAC GGCTGGATTC AGCTGTTATT CTTGTTGACC TTGAGTTATT TATAATAAAT GTTTTGGCTA GAATTTGGAT
TGTTTTATTA AATTATGGGA TTGGTTTTCT CGTGTCTTAA TTTTCTTTTT ATCGTCTTGC ACAGCATCCG GTCAGCAGGA
GCGACTATGA CAACGTAATT GGAGCCTTGC CATATCTGAA AGTAAACAGA AATGCTAAAT AGATGTCGTG TTTGCAAAAC
TGAGTCAAAA GCCTAGCTGT GTTTAGTTGT GAATGGTGAC GCCTCTAATC TGCTTTCAAA TGAATACAGT TTGTTTTGGC
TAATTGAGAC ATCGGTATCT TAAGAATGTG ATTTACCTTT CTGTGTCATG TAACATGGGT ATTTATTGAC ATCCCAGTAT
TGCTATTTAT TTCCCATCTT CCTGTTTATC TCTGGATTTG TTTGGTAAGC TATGATAAAA ATCACGTGAG CATCATAATC
TATTTGGTGA GTTATGTAGA ATGAGGAATA TTAACAAAAT ACTCTACAAT ACTTTCTTCT CATATTACTA TTTACTGTTA
CGTGATATAC TTATGTGGAA TCTATCA

>Vigan.01G411100.01
GTAAAAAAGC AAACTTAAAA AATGAAAAGA AATTGTGATG AGGTGAATGT GAGGGAGAAA AATTAGAGGA CAAGAGCTAG
CTCTCTCTGG CTGCATAGGC AGTTAGCACC TCAGCTTTAT CCATAGACCA GAAGTTTGGG TTAAACGAAG CTGAGCTCAC
CTCACACTGA AGATGGCTAC CGTGTCGTTG GGCTTGGGAA TTTTACCTTG CGCTTCTTCT TCTTATTCAA TTCGTCTCTC
TTACACTTCA GTTCGATTCC CTACATCCAA CAACGCAAAC TCCCTCAACC TTAGTTCTTC AGCTTCCATC TCCGCCCCAC
TTCTTCGTCA AAAGCTCTGC ACAACTCCTT CTCCTCTCCC TCCAACCCTT CGCCCTCTCA CCATTGTATC CGCTAAGGGC
TACAAAATGA AAACCCACAA GGCATCGGCA AAGCGGTTTA GGGTCACGGG GCGAGGCAAA ATTGTTCGTA GGAGAGCTGG
CAAGCAGCAT TTGCTTGTCA AGAAGAACAC CAAGCGCAAA TTACGACTCT CCAAAATGCA TCCGGTCAGC AGGAGCGACT
ATGACAACGT AATTGGAGCC TTGCCATATC TGAAAGTAAA CAGAAATGCT AAATAGATGT CGTGTTTGCA AAACTGAGTC
AAAAGCCTAG CTGTGTTTAG TTGTGAATGG TGACGCCTCT AATCTGCTTT CAAATGAATA CAGTTTGTTT TGGCTAATTG
AGACATCGGT ATCTTAAGAA TGTGATTTAC CTTTCTGTGT CATGTAACAT GGGTATTTAT TGACATCCCA GTATTGCTAT
TTATTTCCCA TCTTCCTGTT TATCTCTGGA TTTGTTTGGT AAGCTATGAT AAAAATCACG TGAGCATCAT AATCTATTTG
GTGAGTTATG TAGAATGAGG AATATTAACA AAATACTCTA CAATACTTTC TTCTCATATT ACTATTTACT GTTACGTGAT
ATACTTATGT GGAATCTATC A

>Vigan.01G411100.01
ATGGCTACCG TGTCGTTGGG CTTGGGAATT TTACCTTGCG CTTCTTCTTC TTATTCAATT CGTCTCTCTT ACACTTCAGT
TCGATTCCCT ACATCCAACA ACGCAAACTC CCTCAACCTT AGTTCTTCAG CTTCCATCTC CGCCCCACTT CTTCGTCAAA
AGCTCTGCAC AACTCCTTCT CCTCTCCCTC CAACCCTTCG CCCTCTCACC ATTGTATCCG CTAAGGGCTA CAAAATGAAA
ACCCACAAGG CATCGGCAAA GCGGTTTAGG GTCACGGGGC GAGGCAAAAT TGTTCGTAGG AGAGCTGGCA AGCAGCATTT
GCTTGTCAAG AAGAACACCA AGCGCAAATT ACGACTCTCC AAAATGCATC CGGTCAGCAG GAGCGACTAT GACAACGTAA
TTGGAGCCTT GCCATATCTG AAAGTAAACA GAAATGCTAA ATAG

>Vigan.01G411100.01
MATVSLGLGI LPCASSSYSI RLSYTSVRFP TSNNANSLNL SSSASISAPL LRQKLCTTPS PLPPTLRPLT IVSAKGYKMK
THKASAKRFR VTGRGKIVRR RAGKQHLLVK KNTKRKLRLS KMHPVSRSDY DNVIGALPYL KVNRNAK*