Variant information

Chr01:54831194 - 54834340

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 [SNPs] [Indels]

SNPs

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
54831217GA371445.771.00DOWNSTREAM(|1706||None|Vigan.01G410900.01), DOWNSTREAM(|4058||None|Vigan.01G410800.01), UPSTREAM(|269||None|Vigan.01G411000.01), UTR_5_PRIME(|149||None|Vigan.01G411100.01)Vigna nepalensis
54831279TC421691.771.00DOWNSTREAM(|1768||None|Vigan.01G410900.01), DOWNSTREAM(|4120||None|Vigan.01G410800.01), UPSTREAM(|331||None|Vigan.01G411000.01), UTR_5_PRIME(|87||None|Vigan.01G411100.01)Vigna nepalensis
54831344CT451667.770.96DOWNSTREAM(|1833||None|Vigan.01G410900.01), DOWNSTREAM(|4185||None|Vigan.01G410800.01), START_GAINED(|||None|Vigan.01G411100.01), UPSTREAM(|396||None|Vigan.01G411000.01), UTR_5_PRIME(|22||None|Vigan.01G411100.01)Vigna nepalensis
54831393AC471949.771.00DOWNSTREAM(|1882||None|Vigan.01G410900.01), DOWNSTREAM(|4234||None|Vigan.01G410800.01), NON_SYNONYMOUS_CODING(MISSENSE|Att/Ctt|I10L|None|Vigan.01G411100.01), UPSTREAM(|445||None|Vigan.01G411000.01)Vigna nepalensis
54831407TC452027.771.00DOWNSTREAM(|1896||None|Vigan.01G410900.01), DOWNSTREAM(|4248||None|Vigan.01G410800.01), SYNONYMOUS_CODING(SILENT|gcT/gcC|A14|None|Vigan.01G411100.01), UPSTREAM(|459||None|Vigan.01G411000.01)Vigna nepalensis
54831418AC421861.771.00DOWNSTREAM(|1907||None|Vigan.01G410900.01), DOWNSTREAM(|4259||None|Vigan.01G410800.01), NON_SYNONYMOUS_CODING(MISSENSE|tAt/tCt|Y18S|None|Vigan.01G411100.01), UPSTREAM(|470||None|Vigan.01G411000.01)Vigna nepalensis
54831470AC371457.771.00DOWNSTREAM(|1959||None|Vigan.01G410900.01), DOWNSTREAM(|4311||None|Vigan.01G410800.01), SYNONYMOUS_CODING(SILENT|gcA/gcC|A35|None|Vigan.01G411100.01), UPSTREAM(|522||None|Vigan.01G411000.01)Vigna nepalensis
54831548TC261033.771.00DOWNSTREAM(|2037||None|Vigan.01G410900.01), DOWNSTREAM(|4389||None|Vigan.01G410800.01), SYNONYMOUS_CODING(SILENT|ccT/ccC|P61|None|Vigan.01G411100.01), UPSTREAM(|600||None|Vigan.01G411000.01)Vigna nepalensis
54831848TC341352.771.00DOWNSTREAM(|2337||None|Vigan.01G410900.01), DOWNSTREAM(|4689||None|Vigan.01G410800.01), INTRON(|||None|Vigan.01G411100.01), UPSTREAM(|900||None|Vigan.01G411000.01)Vigna nepalensis
54832071CT532054.771.00DOWNSTREAM(|2560||None|Vigan.01G410900.01), DOWNSTREAM(|4912||None|Vigan.01G410800.01), INTRON(|||None|Vigan.01G411100.01), UPSTREAM(|1123||None|Vigan.01G411000.01)Vigna nepalensis
54832116GT491824.771.00DOWNSTREAM(|2605||None|Vigan.01G410900.01), DOWNSTREAM(|4957||None|Vigan.01G410800.01), INTRON(|||None|Vigan.01G411100.01), UPSTREAM(|1168||None|Vigan.01G411000.01)Vigna nepalensis
54832153AG461757.771.00DOWNSTREAM(|2642||None|Vigan.01G410900.01), DOWNSTREAM(|4994||None|Vigan.01G410800.01), INTRON(|||None|Vigan.01G411100.01), UPSTREAM(|1205||None|Vigan.01G411000.01)Vigna nepalensis
54832195TC471800.771.00DOWNSTREAM(|2684||None|Vigan.01G410900.01), INTRON(|||None|Vigan.01G411100.01), UPSTREAM(|1247||None|Vigan.01G411000.01)Vigna nepalensis
54832403GC562292.771.00DOWNSTREAM(|2892||None|Vigan.01G410900.01), INTRON(|||None|Vigan.01G411100.01), UPSTREAM(|1455||None|Vigan.01G411000.01)Vigna nepalensis
54832424AC652485.770.98DOWNSTREAM(|2913||None|Vigan.01G410900.01), INTRON(|||None|Vigan.01G411100.01), UPSTREAM(|1476||None|Vigan.01G411000.01)Vigna nepalensis
54832722AG602355.771.00DOWNSTREAM(|3211||None|Vigan.01G410900.01), INTRON(|||None|Vigan.01G411100.01), UPSTREAM(|1774||None|Vigan.01G411000.01)Vigna nepalensis
54832925AG742920.771.00DOWNSTREAM(|3414||None|Vigan.01G410900.01), INTRON(|||None|Vigan.01G411100.01), UPSTREAM(|1977||None|Vigan.01G411000.01)Vigna nepalensis
54833033TC481988.771.00DOWNSTREAM(|3522||None|Vigan.01G410900.01), INTRON(|||None|Vigan.01G411100.01), UPSTREAM(|2085||None|Vigan.01G411000.01)Vigna nepalensis
54833161GT562155.771.00DOWNSTREAM(|3650||None|Vigan.01G410900.01), INTRON(|||None|Vigan.01G411100.01), UPSTREAM(|2213||None|Vigan.01G411000.01)Vigna nepalensis
54833193GT612540.771.00DOWNSTREAM(|3682||None|Vigan.01G410900.01), INTRON(|||None|Vigan.01G411100.01), UPSTREAM(|2245||None|Vigan.01G411000.01)Vigna nepalensis
54833243TA712683.771.00DOWNSTREAM(|3732||None|Vigan.01G410900.01), INTRON(|||None|Vigan.01G411100.01), UPSTREAM(|2295||None|Vigan.01G411000.01)Vigna nepalensis
54833380AG632546.771.00DOWNSTREAM(|3869||None|Vigan.01G410900.01), INTRON(|||None|Vigan.01G411100.01), UPSTREAM(|2432||None|Vigan.01G411000.01), UPSTREAM(|4888||None|Vigan.01G411200.01)Vigna nepalensis
54833508CT522053.770.98DOWNSTREAM(|3997||None|Vigan.01G410900.01), INTRON(|||None|Vigan.01G411100.01), UPSTREAM(|2560||None|Vigan.01G411000.01), UPSTREAM(|4760||None|Vigan.01G411200.01)Vigna nepalensis
54833705GC722918.771.00DOWNSTREAM(|4194||None|Vigan.01G410900.01), INTRON(|||None|Vigan.01G411100.01), UPSTREAM(|2757||None|Vigan.01G411000.01), UPSTREAM(|4563||None|Vigan.01G411200.01)Vigna nepalensis
54834073CT572246.771.00DOWNSTREAM(|4562||None|Vigan.01G410900.01), UPSTREAM(|3125||None|Vigan.01G411000.01), UPSTREAM(|4195||None|Vigan.01G411200.01), UTR_3_PRIME(|98||None|Vigan.01G411100.01)Vigna nepalensis
54834280CT712961.771.00DOWNSTREAM(|4769||None|Vigan.01G410900.01), UPSTREAM(|3332||None|Vigan.01G411000.01), UPSTREAM(|3988||None|Vigan.01G411200.01), UTR_3_PRIME(|305||None|Vigan.01G411100.01)Vigna nepalensis

Indels

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
54833227TTCCTAACACTTCTC552640.731.00DOWNSTREAM(|3717||None|Vigan.01G410900.01), INTRON(|||None|Vigan.01G411100.01), UPSTREAM(|2280||None|Vigan.01G411000.01)Vigna nepalensis
54833549CATC502177.731.00DOWNSTREAM(|4039||None|Vigan.01G410900.01), INTRON(|||None|Vigan.01G411100.01), UPSTREAM(|2602||None|Vigan.01G411000.01), UPSTREAM(|4718||None|Vigan.01G411200.01)Vigna nepalensis