GBrowse Details

Vigan.01G405700.01

Basic Information:
Name: Vigan.01G405700.01
Multiple alignment
Variant Information
Position: Chr01:54320050..54324822 (- strand)
Length: 4773
Functional Information:
Description: Similar to 1-deoxy-D-xylulose 5-phosphate reductoisomerase. [F4ZZ26, Glycine max]
GO: Biological Process: isoprenoid biosynthetic process (GO:0008299)
Biological Process: oxidation-reduction process (GO:0055114)
Molecular Function: protein binding (GO:0005515)
Molecular Function: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity (GO:0030604)
Molecular Function: metal ion binding (GO:0046872)
Molecular Function: NADPH binding (GO:0070402)
InterPro: 1-deoxy-D-xylulose 5-phosphate reductoisomerase (IPR003821)
1-deoxy-D-xylulose 5-phosphate reductoisomerase, N-terminal (IPR013512)
1-deoxy-D-xylulose 5-phosphate reductoisomerase, C-terminal (IPR013644)
NAD(P)-binding domain (IPR016040)
DXP reductoisomerase C-terminal domain (IPR026877)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:53.72,16.72,40.84,68.38,21.10,26.77,48.01,20.21
Arabidopsis thaliana homolog: AT5G62790.2
Automatic updates:
Name: NM_001253133 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max 1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic-like (DXR1), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:54320050..54320249 (- strand)
Length: 200
Type: three_prime_UTR
Position: Chr01:54320250..54320418 (- strand)
Length: 169
Type: CDS
Position: Chr01:54320519..54320665 (- strand)
Length: 147
Type: CDS
Position: Chr01:54321262..54321383 (- strand)
Length: 122
Type: CDS
Position: Chr01:54321538..54321642 (- strand)
Length: 105
Type: CDS
Position: Chr01:54321758..54321869 (- strand)
Length: 112
Type: CDS
Position: Chr01:54322114..54322181 (- strand)
Length: 68
Type: CDS
Position: Chr01:54322350..54322499 (- strand)
Length: 150
Type: CDS
Position: Chr01:54322638..54322700 (- strand)
Length: 63
Type: CDS
Position: Chr01:54322779..54322904 (- strand)
Length: 126
Type: CDS
Position: Chr01:54323458..54323544 (- strand)
Length: 87
Type: CDS
Position: Chr01:54323942..54324117 (- strand)
Length: 176
Type: CDS
Position: Chr01:54324435..54324525 (- strand)
Length: 91
Type: CDS
Position: Chr01:54324526..54324822 (- strand)
Length: 297
Type: five_prime_UTR

>Vigan.01G405700.01 class=Sequence position=Chr01:54320050..54324822 (- strand)
GGCGGCGAGT GGGGATTCCA ATATACACAC ATTCCTTGGC ACTCTCTCCT AATCTTAAAA TTAAACTCTT ATTTTATTAT
CTATTTCCAC ATATAATTAA TTATAATAAA TATAATAAAT AAAAAATGCA TCTTTCATAT GTGATAATAT GTCTCAGACC
ACATCCACTG TTGTCTATTA GTACTAGTAT AAAAAAACTC AGCAATTCCA GCCACCACAC AACCTCCTTC TGCTGCCACC
ATTCTTCTTG CTCGAGATTT CAATTCTTTT TCTCCAAACT CAACTTGGGT TTATGTGATG GCGCTCAATA TCTCTTCTCC
GGCTGAAGTC AAGTCCCTTT TTTTCTCTGA TTCCTTCAAG TCTAATTGTC TCACAGCAAA ATTCCCAGGT TCTTCTCTCT
TCCTCTGTTC ATTTAAACCA TGTTTCCTTC CTCGCCTCTT CTGGGAAATG TCAAAGTTAA CGACTTTATG CACAAACTCC
CTCCCCATTG AATTATTGAT TTCTTTCCTT TCCGGAAATT ATGCTATTTT CTGGTCCTAT ACTGTTATGA GCGACTTTGT
CGATGTTGCC GTGATGTTTT TGTTTTGTGG AATGGCAATA TGTTTTTTTT TGGAAAGGCA GTATTTGTTC GTTGTGTTAT
GTTTTGATGT CAATTGATGG AGCATGCAAG GTTTGACTTT GATGGTGTTT TGAATTTGAT GCTAGGTGGT TTTGCTTTTA
AAAGAAAAGA TGGTGGAAGG CGAGTTAACT GCTCACTGCA GGCATCACCA CCACCACCAC CAGCCTGGCC GGGACGAGCG
TATCCAGAAC AAGTTGGCAA GACTTGGGAG GGACCAAAAC CCATATCTAT TGTGGGATCT ACTGGTTCTA TTGGAACTCA
GGTATTGGTG CTAATGGAAT CTCCCTCTAT CATCATAATC TGTTCTTAGT AATATTAGAT TTAACGGCTA ATAATAGTCT
ATTACAAACG TCTGGGTCAA AAGCTAGCTT AAAGAGAGGC ATTTGGGGTT ACTCTTATAA AGAGCATTCG CCCTTCGGAT
TTTATTCCTA ACCGATGTAA CACATCTTAA CATGCAAGAT GCTGTTTGCT TGCAAACATT TGTTGGAAAT AATTTGATAT
TTTGTGTTTA TGTATTCCTT TAAATCTTTG AAATGAATAT TCGATTTTTT ATGTAATACT GTGAATACTT GATGTTTGCC
CTTTGTAGAT GTAGCTTAAC TTGCCTTCGT CTCATATTTT TTGATGTAGT GCATCTTTTC CCTTGTATGC TTTTGTAGAC
TCTAGATATT GTGGCAGAGA ATCCAGACAA GTTTAAAGTT GTGGCACTTG CAGCTGGTTC AAACGTTACT CTCCTTGCAG
ACCAGGTAAC CACCGCACTC CCAGCATGCA ATGGAACTGT GAATTGATTT GTGTCTATAT ATGACCAGAT TTAAATCTGA
AATTTCACAA CCGCAATGGA TTTATTTAAC CAATTTACTC ACGTGGCTAA TTTACAACTG TAATTGTCGT CACATTAGTT
GCAATGAGAA TGATCTTCCT GGTTATGTTT TCTAATAATT AAGGTGCAGT AGGCATGTTG TTCTTTTGCA TTTATGTATG
AAGGGAACCA ATGAGTTCAG ATCATACAAA ACAAAAATAT CTTAAAACTA AATGAACTAC TATGGTCTAA GGTTCAGTTA
ATGTATCTCA TAAAAGGACA GCCTAATCTC CCACGTAGTG GAATTTGAGG AGAGTACATA TGCAGTCTTA TCCTGCAAGT
AGAGAGGTTG TTTCTAGGAT TTGAGTCCAT GATCCCCCAC CTCACAAGGA AACCTTACTG TTGTTCCAAG ACTCACCATC
ATTTGTAGTA TTTAATATTT CAATATAATA AGCACAAGAA AAAAGAGAAT AATCCCTTTT AATATTTATG TTGCACAGAT
AAAAACATTT AAGCCTCAAC TTGTTGCTGT TAGAAACGAG TCGCTAATTG CTGAACTTGA AGAGGCTTTG CATGATGTTG
AACAGAAACC TGAGATCATC CCTGGAGAGC AGGGAATCGT TGAGGTGGAC ATCTGCTTTA TTCATTTGTT GTAATTTTGT
TAGAGCCTTT TTTTTCATGA CTTATAGCTT ATATATTCTC AGGTTGCTCG TCACCCAGAT GCAGTCAGTG TAGTCACAGG
AATAGTAGGG TGTGCAGGAC TGAAGGTAAA CTTCTTTTCC CTATTTTTGT CCTTTCTTGG TAACCAATCT CTTTACTGTG
CCATATAATG TGGTCTTCTG TGTCCATGCA TCTTACATAT CTATTAATAT TAGAAAGCTG AAATCCTCTC ATTCTTTTAT
TAGCCGACAG TTGCTGCGAT AGAAGCAGGG AAAGACATAG CTTTGGCCAA CAAAGAGACG TTGATTGCCG GAGGTCCTTT
TGTCCTTCCT CTTGCTCAGA AGCATAACGT AAAAATACTT CCTGCTGATT CGGAACATTC TGCCATTTTT CAGGTAAGAA
GGCACATAGT CTATTAAAAA TCATGTGTGC AACAAGTTCA ATAGACATAC TCATACTCTT TATTATCTAT ATATTGGCCT
CTGCACCTTG TTGACTGCAA TCAATTATTT TATCATATGA TCCTCTTTTA CTGCAAAAGC TTAAAGGATT CTTTGTTGCA
GTGTATCCAG GGGTTACCAG AGGGTGCACT TAGGCGCATT ATTCTAACAG CATCTGGAGG TGCTTTTAGG TGTGTACATG
ACTTCATTTG ACCCGTTTTG CATGTTCATT GGAACCATAT TTTCTTGTTA TGTTGGAAAC TGAAAGAATA TGTAGCACCA
TAAACATTAT TCCTATGTAT ATCTGAATGT CTTGTGCTGT TTTCTGTCAA TTAATATTCT TTGATCATGA AAAACCGTGA
ATTGTTGCTC TCTTTATTTT GTTTCCGGGA TCTATATAAT AAATTTGAAT ACAAGTCCCT TGCTGATTGA CAGGGATTTG
CCAGTTGAAA AGCTGAAAGA TGTTAAAGTA GCTGATGCAT TAAAACATCC CAACTGGAAT ATGGGGAAAA AGATAACTGT
GGACTCTGCT ACACTCTTTA ACAAGGTTTA TTTCTCTTTT ATGTCAACAT ATTGGATGAA AAAAGCCATT TTATAAATCT
GTTTGATTAT GTAGTATGAA CTTCCTAGGT AAAAGTTAAA TTTGTTGTAC TTCTTTGCAG GGTCTAGAAG TAATTGAAGC
ACATTACCTA TTTGGAGCTG ACTATGATAA TATTGAGATT GTCATTCATC CGCAATCAAT CATACATTCA ATGATTGAAA
CACAGGTTAA TAACATATTT TTATTTTATG TTGGTTACCA TGTTTTAATA TCCATATATT TGAATAACCA TAGCACCCAG
GCCTTTGCTA AATTTGGGTG GGAGTAAACT CGAGTATAGC AAAGGAGAAA AAGATCACTA ACTTATTTCT TGATTCCAGG
ATTCATCTGT TCTTGCACAA CTAGGGTGGC CTGATATGCG GTTGCCGATC CTCTATACAT TATCATGGCC TGACAGGGTT
TATTGTTCTG AAGTCACTTG GCCTCGCCTT GATCTTTGCA AGTACTACAC TTTTTCCCTG CTGCTTACTT ATTTCAACTC
GATCAAATTT TATTTTCCAT CCATACTAAA AGAAAATAGA CAGATTCAGT TGACTTACAG TTTTCAAGTT TTGAAGTCTT
TATTCTTAAA TGAAGTTTTT CAGTCCAATT TGAATTATTG ATGGTTCTTC TTATTTTGAA TGATCGGATC ATTCAAATTG
TGTTTGGCTC CTTGCCTAGT TTCCAGCTAG GAAGTATATT TTATTCTTCA TGCATTTCCT TGGAATGTAA AAGATGGAAT
TTGATTCAAC TTATTTTGAA AAATAAAGTG AATATTTCCA GGAACCAATT CTTCCCATAC ATGTACATTA GCCTGTAAAT
AATTTGAAGG AAAACTAAAT TGGTTGAATT TTGGTTTTGA CATGCGGATT CATTCTCAGA CAGTATCCAA AGCAATGCTT
AAAACACGTT CCTATAAGTT CCTTTTCACT TTTAAGTGTT CATTACTATC ATAAGACGTC ATTATGCAAG ATGAATCAGT
TAAATTAATT TGAACTGTCA TGGAATAGTT GCTCTTAGTT TGTCTGACAC AGTTGTCTAT GAAATGTGGT TATGTAGGCT
TGGTTCACTT ACATTTAAAA CTCCAGACAA TGTAAAGTAT CCATCCATGA ATCTTGCCTA TGCTGCTGGT CGTGCTGGAG
GAACAATGAC AGGAGTTCTC AGTGCAGCAA ATGAGAAAGC TGTAGAGTTG TTTATTGATG AAAAGTAAGA TTCCGTTATT
TTTCCTCGTT GCAAATTTTC ACATACATGT TCATATCTTT CGAAATTTGT TACCTTAATT GAAATTGTTC TAATGTGACT
TTAGGATTAG CTATTTGGAT ATATTCAAAG TGGTGGAGCT AACATGTGAG AAGCATCAAA ATGAATTGTT GACCTCGCCT
TCCCTTGAAG AAATTATTCA CTATGACCTA TGGGCACGAA AATACGCTGC TAGTTTGCAA GACTCTTCCA CCTTCACACC
TATTCTTGCA TGAGAAGGAT TATTAGTGTA GGGATATGGC TGATTCCTCC CACAAGGCCC TTGAACAATT TATCCAATGC
AGAATCATGC ATTCCCTTCA TGTTGAAAAA TAAAAAGGGT TATATTTATG GAATTTTTGG TGTCTTAACA TATCTCAATT
GATCTTATAA TTTTGACGTA ATTGAAAAAA ATATATTTTT TAATGGTTGC CCA

>Vigan.01G405700.01
GGCGGCGAGT GGGGATTCCA ATATACACAC ATTCCTTGGC ACTCTCTCCT AATCTTAAAA TTAAACTCTT ATTTTATTAT
CTATTTCCAC ATATAATTAA TTATAATAAA TATAATAAAT AAAAAATGCA TCTTTCATAT GTGATAATAT GTCTCAGACC
ACATCCACTG TTGTCTATTA GTACTAGTAT AAAAAAACTC AGCAATTCCA GCCACCACAC AACCTCCTTC TGCTGCCACC
ATTCTTCTTG CTCGAGATTT CAATTCTTTT TCTCCAAACT CAACTTGGGT TTATGTGATG GCGCTCAATA TCTCTTCTCC
GGCTGAAGTC AAGTCCCTTT TTTTCTCTGA TTCCTTCAAG TCTAATTGTC TCACAGCAAA ATTCCCAGGT GGTTTTGCTT
TTAAAAGAAA AGATGGTGGA AGGCGAGTTA ACTGCTCACT GCAGGCATCA CCACCACCAC CACCAGCCTG GCCGGGACGA
GCGTATCCAG AACAAGTTGG CAAGACTTGG GAGGGACCAA AACCCATATC TATTGTGGGA TCTACTGGTT CTATTGGAAC
TCAGACTCTA GATATTGTGG CAGAGAATCC AGACAAGTTT AAAGTTGTGG CACTTGCAGC TGGTTCAAAC GTTACTCTCC
TTGCAGACCA GATAAAAACA TTTAAGCCTC AACTTGTTGC TGTTAGAAAC GAGTCGCTAA TTGCTGAACT TGAAGAGGCT
TTGCATGATG TTGAACAGAA ACCTGAGATC ATCCCTGGAG AGCAGGGAAT CGTTGAGGTT GCTCGTCACC CAGATGCAGT
CAGTGTAGTC ACAGGAATAG TAGGGTGTGC AGGACTGAAG CCGACAGTTG CTGCGATAGA AGCAGGGAAA GACATAGCTT
TGGCCAACAA AGAGACGTTG ATTGCCGGAG GTCCTTTTGT CCTTCCTCTT GCTCAGAAGC ATAACGTAAA AATACTTCCT
GCTGATTCGG AACATTCTGC CATTTTTCAG TGTATCCAGG GGTTACCAGA GGGTGCACTT AGGCGCATTA TTCTAACAGC
ATCTGGAGGT GCTTTTAGGG ATTTGCCAGT TGAAAAGCTG AAAGATGTTA AAGTAGCTGA TGCATTAAAA CATCCCAACT
GGAATATGGG GAAAAAGATA ACTGTGGACT CTGCTACACT CTTTAACAAG GGTCTAGAAG TAATTGAAGC ACATTACCTA
TTTGGAGCTG ACTATGATAA TATTGAGATT GTCATTCATC CGCAATCAAT CATACATTCA ATGATTGAAA CACAGGATTC
ATCTGTTCTT GCACAACTAG GGTGGCCTGA TATGCGGTTG CCGATCCTCT ATACATTATC ATGGCCTGAC AGGGTTTATT
GTTCTGAAGT CACTTGGCCT CGCCTTGATC TTTGCAAGCT TGGTTCACTT ACATTTAAAA CTCCAGACAA TGTAAAGTAT
CCATCCATGA ATCTTGCCTA TGCTGCTGGT CGTGCTGGAG GAACAATGAC AGGAGTTCTC AGTGCAGCAA ATGAGAAAGC
TGTAGAGTTG TTTATTGATG AAAAGATTAG CTATTTGGAT ATATTCAAAG TGGTGGAGCT AACATGTGAG AAGCATCAAA
ATGAATTGTT GACCTCGCCT TCCCTTGAAG AAATTATTCA CTATGACCTA TGGGCACGAA AATACGCTGC TAGTTTGCAA
GACTCTTCCA CCTTCACACC TATTCTTGCA TGAGAAGGAT TATTAGTGTA GGGATATGGC TGATTCCTCC CACAAGGCCC
TTGAACAATT TATCCAATGC AGAATCATGC ATTCCCTTCA TGTTGAAAAA TAAAAAGGGT TATATTTATG GAATTTTTGG
TGTCTTAACA TATCTCAATT GATCTTATAA TTTTGACGTA ATTGAAAAAA ATATATTTTT TAATGGTTGC CCA

>Vigan.01G405700.01
ATGGCGCTCA ATATCTCTTC TCCGGCTGAA GTCAAGTCCC TTTTTTTCTC TGATTCCTTC AAGTCTAATT GTCTCACAGC
AAAATTCCCA GGTGGTTTTG CTTTTAAAAG AAAAGATGGT GGAAGGCGAG TTAACTGCTC ACTGCAGGCA TCACCACCAC
CACCACCAGC CTGGCCGGGA CGAGCGTATC CAGAACAAGT TGGCAAGACT TGGGAGGGAC CAAAACCCAT ATCTATTGTG
GGATCTACTG GTTCTATTGG AACTCAGACT CTAGATATTG TGGCAGAGAA TCCAGACAAG TTTAAAGTTG TGGCACTTGC
AGCTGGTTCA AACGTTACTC TCCTTGCAGA CCAGATAAAA ACATTTAAGC CTCAACTTGT TGCTGTTAGA AACGAGTCGC
TAATTGCTGA ACTTGAAGAG GCTTTGCATG ATGTTGAACA GAAACCTGAG ATCATCCCTG GAGAGCAGGG AATCGTTGAG
GTTGCTCGTC ACCCAGATGC AGTCAGTGTA GTCACAGGAA TAGTAGGGTG TGCAGGACTG AAGCCGACAG TTGCTGCGAT
AGAAGCAGGG AAAGACATAG CTTTGGCCAA CAAAGAGACG TTGATTGCCG GAGGTCCTTT TGTCCTTCCT CTTGCTCAGA
AGCATAACGT AAAAATACTT CCTGCTGATT CGGAACATTC TGCCATTTTT CAGTGTATCC AGGGGTTACC AGAGGGTGCA
CTTAGGCGCA TTATTCTAAC AGCATCTGGA GGTGCTTTTA GGGATTTGCC AGTTGAAAAG CTGAAAGATG TTAAAGTAGC
TGATGCATTA AAACATCCCA ACTGGAATAT GGGGAAAAAG ATAACTGTGG ACTCTGCTAC ACTCTTTAAC AAGGGTCTAG
AAGTAATTGA AGCACATTAC CTATTTGGAG CTGACTATGA TAATATTGAG ATTGTCATTC ATCCGCAATC AATCATACAT
TCAATGATTG AAACACAGGA TTCATCTGTT CTTGCACAAC TAGGGTGGCC TGATATGCGG TTGCCGATCC TCTATACATT
ATCATGGCCT GACAGGGTTT ATTGTTCTGA AGTCACTTGG CCTCGCCTTG ATCTTTGCAA GCTTGGTTCA CTTACATTTA
AAACTCCAGA CAATGTAAAG TATCCATCCA TGAATCTTGC CTATGCTGCT GGTCGTGCTG GAGGAACAAT GACAGGAGTT
CTCAGTGCAG CAAATGAGAA AGCTGTAGAG TTGTTTATTG ATGAAAAGAT TAGCTATTTG GATATATTCA AAGTGGTGGA
GCTAACATGT GAGAAGCATC AAAATGAATT GTTGACCTCG CCTTCCCTTG AAGAAATTAT TCACTATGAC CTATGGGCAC
GAAAATACGC TGCTAGTTTG CAAGACTCTT CCACCTTCAC ACCTATTCTT GCATGA

>Vigan.01G405700.01
MALNISSPAE VKSLFFSDSF KSNCLTAKFP GGFAFKRKDG GRRVNCSLQA SPPPPPAWPG RAYPEQVGKT WEGPKPISIV
GSTGSIGTQT LDIVAENPDK FKVVALAAGS NVTLLADQIK TFKPQLVAVR NESLIAELEE ALHDVEQKPE IIPGEQGIVE
VARHPDAVSV VTGIVGCAGL KPTVAAIEAG KDIALANKET LIAGGPFVLP LAQKHNVKIL PADSEHSAIF QCIQGLPEGA
LRRIILTASG GAFRDLPVEK LKDVKVADAL KHPNWNMGKK ITVDSATLFN KGLEVIEAHY LFGADYDNIE IVIHPQSIIH
SMIETQDSSV LAQLGWPDMR LPILYTLSWP DRVYCSEVTW PRLDLCKLGS LTFKTPDNVK YPSMNLAYAA GRAGGTMTGV
LSAANEKAVE LFIDEKISYL DIFKVVELTC EKHQNELLTS PSLEEIIHYD LWARKYAASL QDSSTFTPIL A*