VIGGS:Variant information

Chr01:54320050 - 54324822

Position	Ref.	Alt.	Depth	Score	Freq. Of Alt.	Effect	Species
54320298	G	A	37	1515.77	1.00	SYNONYMOUS_CODING(SILENT\|taC/taT\|Y456\|None\|Vigan.01G405700.01)	Vigna nepalensis
54320495	C	T	56	2286.77	1.00	INTRON(\|\|\|None\|Vigan.01G405700.01)	Vigna nepalensis
54321523	A	G	66	2851.77	1.00	INTRON(\|\|\|None\|Vigan.01G405700.01)	Vigna nepalensis
54322588	T	C	59	2522.77	1.00	INTRON(\|\|\|None\|Vigan.01G405700.01)	Vigna nepalensis
54323174	A	G	60	2437.77	1.00	INTRON(\|\|\|None\|Vigan.01G405700.01)	Vigna nepalensis
54323358	A	G	46	1872.77	1.00	INTRON(\|\|\|None\|Vigan.01G405700.01)	Vigna nepalensis
54323623	G	A	57	2040.77	1.00	INTRON(\|\|\|None\|Vigan.01G405700.01)	Vigna nepalensis
54323641	A	C	54	2093.77	1.00	INTRON(\|\|\|None\|Vigan.01G405700.01)	Vigna nepalensis
54324255	C	T	61	2157.77	1.00	INTRON(\|\|\|None\|Vigan.01G405700.01)	Vigna nepalensis
54324303	A	G	52	2023.77	1.00	INTRON(\|\|\|None\|Vigan.01G405700.01)	Vigna nepalensis

Position	Ref.	Alt.	Depth	Score	Freq. Of Alt.	Effect	Species
54321520	TA	T	64	2842.73	1.00	INTRON(\|\|\|None\|Vigan.01G405700.01)	Vigna nepalensis
54322037	CTT	C	59	2577.73	1.00	INTRON(\|\|\|None\|Vigan.01G405700.01)	Vigna nepalensis
54322323	TTTTTAA	T	66	2932.73	1.00	INTRON(\|\|\|None\|Vigan.01G405700.01)	Vigna nepalensis
54324040	C	CTGG	25	1111.73	1.00	CODON_INSERTION(\|cca/ccaCCA\|P56PP\|None\|Vigan.01G405700.01)	Vigna nepalensis
54324426	G	GA	62	2276.73	1.00	INTRON(\|\|\|None\|Vigan.01G405700.01)	Vigna nepalensis
54324770	A	ATGGCGAAAATAAGAGAGAGATAAGGACAAAATAGAG	46	2609.73	1.00	UTR_5_PRIME(\|246\|\|None\|Vigan.01G405700.01)	Vigna nepalensis