GBrowse Details

Vigan.01G394000.01

Basic Information:
Name: Vigan.01G394000.01
Multiple alignment
Variant Information
Position: Chr01:53310021..53314783 (+ strand)
Length: 4763
Functional Information:
Description: Similar to Nucleoside diphosphate kinase. [V7CBD1, Phaseolus vulgaris]
GO: Biological Process: nucleoside diphosphate phosphorylation (GO:0006165)
Biological Process: GTP biosynthetic process (GO:0006183)
Biological Process: UTP biosynthetic process (GO:0006228)
Biological Process: CTP biosynthetic process (GO:0006241)
Molecular Function: nucleoside diphosphate kinase activity (GO:0004550)
Molecular Function: ATP binding (GO:0005524)
InterPro: Nucleoside diphosphate kinase (IPR001564)
Nucleoside diphosphate kinase, active site (IPR023005)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:68.97,29.80,22.33,45.22,19.03,34.85,15.03,11.02
Arabidopsis thaliana homolog: AT5G63310.1
Automatic updates:
Name: BT091410 NCBI(nuccore)
Organism: Glycine max
Description: Soybean clone JCVI-FLGm-7L24 unknown mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001254588 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max nucleoside diphosphate kinase 2, chloroplastic-like (LOC100811753), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:53310021..53310144 (+ strand)
Length: 124
Type: five_prime_UTR
Position: Chr01:53310145..53310369 (+ strand)
Length: 225
Type: CDS
Position: Chr01:53310469..53310525 (+ strand)
Length: 57
Type: CDS
Position: Chr01:53310716..53310802 (+ strand)
Length: 87
Type: CDS
Position: Chr01:53311731..53311811 (+ strand)
Length: 81
Type: CDS
Position: Chr01:53311902..53312014 (+ strand)
Length: 113
Type: CDS
Position: Chr01:53312164..53312213 (+ strand)
Length: 50
Type: CDS
Position: Chr01:53313432..53313499 (+ strand)
Length: 68
Type: CDS
Position: Chr01:53313500..53314783 (+ strand)
Length: 1284
Type: three_prime_UTR

>Vigan.01G394000.01 class=Sequence position=Chr01:53310021..53314783 (+ strand)
TTACCATTGT GTGTATAAAG AAGATAAAAA TTTATTTAGA ACATATCCAA AGAAAGAAGA AAGAGAGAAG AACTGTGTTC
TTAGCCGTAG TTTTGTCTGT TTGTGAGGTG AGGCGCAGAC GAAGATGGAA GTTGTGTGTG GAAGTGGGGT TTGCGTCTCA
TCTCTTCCGC GCTCATCAAC GATTACCAGA AGCACTGTTC CTCAATTCCG AGTCAGTTAC CAATACCTAA CACCGTTTCC
TTCACAATCC CATCTATTCT CCTATCACCC TCCGCCCTAT GCTAAAACCC TCCGTGCCAG AACCACCACC AAACCCGCTA
TTTTCCTTCC CCACTTAGTT GCATCTCTGG TTTCCACTCT CTCTCTCTCT CTCTCTCTCA ACGATTTCAA TTTTCTAACT
CTAATTTATC AGAACCTGTC TTTAATTGTT AGTTGTTCTA TTGTGCAGCA GCAAGTTGAC CAGACTTACA TAATGGTGAA
GCCCGACGGC GTGCAACGTG GCCTCGTAAG CTTCCTGATT TCTTATTTGC AATTTCATTT CTTCTGGTTT CAGGAATAAA
GGGGGAAAAT GAGCTTGTAA TTTTTTGTAT GTTTTTTATA TTGCTTATAT TTAGGTCATT GGTGTTTTGG AATAATGTTG
TTTATGGCTC CCTGTTCACA ATGCTGAATT TTCTTGTTGT GTTGAACTGG TATAGGTCGG AGAAATTATT TCTAGGTTTG
AGAAGAAGGG GTTTAAGTTG ACTGGCTTGA AGCTCTTCCA GTGCTCTAAA GAGTTAGCTG AGGTTTGTAC TTGTTTGTGT
AAATGTCATG TGTTGAGTGC ATTGTTTCTT TTTTTCTTTT CTATTGTTGG GATTATAGGG TGCAAGTAGG AAAGGAGGAA
AGGAGAGATA GAAGGCTCAA TGATATTCTA TCAAACTGAC ATGGATTATA ATTATGACTA TGAAATGATA CAAAGTATTG
AATCGATAGT CGTACTCAAA CTGATGATAC AATTAACTGT AATTAAATAA GGAAATCCTT TCCTTTGTTA GAGAACTAAA
TGATTCCACA AAATATTCCG AAGTTCTTCT ATGATATTCA AAGGCACACA GAGGACATAA TAATAACACT TCTATAAACT
TTAGGTTGTT ATAAATTAAC ACAAAAACAA CTCCATGTTC CGTAATGCAT GCAATAGGAG ATGTGCTCTT GTAGAGGTGC
ATGCCAGAAG AAGTACCTTC ATTGGGGAAC ACAATGGGAC AATAAAGATG ATTGTTTTTC CCTAATTAAA CAAGGAAAAA
TAAATGAGAT TACTGCTTTT ACAATAAGAA GATAAAATGT ATCAAAAAGA TCTTCCGAGG CATTTCAAGA TACACCAAAT
ATATTGTGAT ACATTCTAAG TGTGATATCA TTTAAAAGGT ATATTAGACT CACATTTTTC CGTATACAAT TCCAATAGAA
AATTAAACAA TAAAATACTT TCCTAATAAT TGTTAACGCA GTATATTTGA TTTGATTGTA GTTGCATGAA CTACAACAAT
ATGGAGTGCT TGAAAAACTG GTTCCATCCA TTCAATTAGA TAACCCGATA CATCCATATT TAAATGATTG TATACTTGAC
CATATGATGG ACATACATCT TGTGTTTGCA GTAATATTGA TTCTATCGTG TGTCTGTTTT AATGTGCTTA TTGTGTTTAT
AAGGCTTATG GTGACTGTTT ATGGTTCCAG GAGCATTACA AGGACCTAAA CCAAAAGTCA TTCTTCCCCA AGCTCATTGA
CTATATTACT TCTGGTCCTG TTGTTTGTAT GGTATAAACC CAATCCAGCA GAACCCCAAA TTCACCTACA TTTTTTAATG
AACTTGCTGA ATTTGTTTTA TCGTTTTGCC ATGTTTGCAA GGCTTGGGAG GGTGTTGGAG TAGTGGCATC CGCACGTAAG
CTTATAGGGG CTACTGATCC TCTTCAAGCT GAACCAGGCA CAATAAGAGG AGACCTTGCT GTTCAAACAG GAAGGTAAGG
CCTTTAATCT TTTGCATCCA ACTTTTACTT TTGAGATTCT TCACTCCTTC AAGAATCAAG GTAGGCTGTA GAGCTTGCGT
GTTCCTTGTT GACTTGAGTA TCAAGATTCA GGAGTGATAA GATTATTATG TTGGAATTGG CAGGAATGTA GTTCATGGCA
GTGACAGTCC CGAAAATGGA AAGCGTGAAA TAGGTAAGGC CTCTCATCTT GTGAAAGAAA ACAGAAAAAT TAGCCATTGA
TTTGAACTTT AGAAGGGTGC TGAAGTGTTA TGGATATACA AAAAGGCTTT TTTAAATTGC TTTGGAGACA AGTTTGACTT
TTAAGGAACA TTTTTTTGGG AATAGCCCTT TGAACCCGAA CTTTGCAAAA ATATAATGAT ATTTTTATTG AAGTGCCTTA
CCACGGAATG GTAAAAGGAT TACATTACGG ACTGCATATG GTTAAAAAAG TAGAATCTTT ATGACAGTAA GCCGTATCTT
TCAAGAGTAG TGATTGTAGG AGTGATTTTG TGGTATTATC CACCAACTAG GTTGTTTAAA TTGAAAATAT AGGTAAAGTC
ATGGAACTCT AGCAAACTCA AATCATAAGC TTGACTTGCA AACACTTACA AAATAATCAT TTAGAAAATA TATAACAGGA
TCCAAACATA AAATAATAGC ACCCTAACTG ATATCCAACA TTCCAACTTC AAAAGAAAGC AATTTAAGGT ATTAAAATAT
GAAACATAAT TCTTTGGCCT AACTGCAATA TTGTGCTTAG CCCAGCACTT GATTATTATG TAGTGAACAA AACAGGAAAA
AGAAAACGCT GAAAACTTCA AATTAGCATT ATAATCTCAA TATATGTTGC AGAGCATAGT AATTCGAGCT GAGTATGCAA
GATCATTGTC CAAAACTGTG TAATGAGGTT GAAACCATGG ATTAATCCAA TTTTGTAACT TCAATTAGTG CACACACAAT
TTAACTTATT TGTGCCCTGT GCTTGTAAAC TTGTAAATGT TTGAGAGTTC ACTGTAGAAT CATGATATAT TTCTAGTAGT
TAGCTTAGCC TAACTACAGA CAATTGTATG CATATTGAAT ACATTATTAG AAGATCTATG CAATAATTGA ACCCGTTGTT
CTGAATTTCT ACCAAGTTCG CCAATAAATC AAATGCTGCC TTAGACCTAC CATATATGTT ATTAAGGTTT TAATCATTTG
AAAAATGTCT TGCAAACCAA TTAATCTGGT TTATTTAAAG AGAGTGAATG TTTTGTTGAC TTCTCCCAAA TTATTCTTTA
AACAACAATT GGTGTAGGTA TGGGCACTAA TATCTGATGT TAGTAGCCAG AACCATCATT TTTGGAAATA ATATTTAAAT
AGTTTGGGGA ATTTGTGATT CTTGATTAAC TGTGGTTTCC ATGTATTTCA GCTCTATGGT TCAAGGAAGG CGAATTATGC
GATTGGACCC CCGTTCAAGC ACCGTGGCTG AGAGAATAAT GAATCACAGA TTTCCAGTTC CAATATTCAT GCCATTTCTA
GTTTCAATAA TGTATCAATT GTTTTCGGCC TCAAATGTAG AACTACATTA ATTGTTGCTT AAATTTTGTT AAATTTTGCT
GGACTCGGAT TCTTCTAGCC CATGCCATTT TCTTTTTCTG TCATGTCAGA TTTAAACGGG TGATGTGATT GAAGAATAAT
AGAAAATCTA CCATCTAGTG AAATTTGCTC CTGAAAGTGA GTCGAACCAG TGAACAAGAA TAATGACTGC GACAGGCAAA
AGATTTTAAC TAGCATTTAT ACTTGAAACA AAACTGGTCC ACACCTGAAT GTAAACAGAA GAATGGGATA TAATACAACA
GCTGGAAATA ATTTGCATGG AACAGTGGCA GGTATACATA TTTGTGTTGC TCACTTCATT GCTTCCAGGT CATGATAAAT
ACAACTCTAA TCCGACATTT CACAATCTTG CAAAATTTGG ACACCGACCA CTTCATTTCT GCAATCATAA TCAACAGAAG
TTGACGAGAT ACATTCAGAA CTTCCATTCT CCGATGAAGT TGTTGTCTTT GCAGAAGATG AAACATCCAC ATCTCCGGTA
TTCACCACTC TAAAGAAATC TAGAATGGTA AGATTAACTT GCCTTCGCAG TTCCGAGTTC CCACTAGAAA CAATATCACT
AACCCTGGGA GAAGAGTTAT CAGACTCTGT ATCCATCATC GTTTTCTCGG AACATGAAGT GCTCTCTGGA TTAAAATCTG
GCTGATTTGC TTCTTTAGCA CAAGGTGAAC TAACTGAAGA ATCGTCTATA ACCTCACTTG TATCGAGTCG CGCACCAATC
TTTAGCTTCA TGAGAGTAGC CTCTGAATCG AAAAGATATT ATCAAGCCAC ATACGCAAAC AGTGTTGAGT GCGTAATTAA
ATCAATAACC TAAATTTTGT TTAAGCGAAT TGAAAGAGAG AGAGGGAGAG AGTGTGTACC GTAGATGGAG AAGGTGTCAT
CTTTGAGAAT CTTGGAAGGA GAACCCTCTA ATGTTTCCAG TGACGAAGTC GATGCCCTGA TTCTGCCGAA CATTTGTGAT
GCTATCTTCG CTTCGGTTCT GTGCGCGTCG GGTATTCCGA AACGAAAAGA TCAGAGAAAA GCATAAATAG AGAGAGAAGC
AGAATTTTTG TTGGCGCCCT TTTTGTATTG AATTACGGAA TTAGAGCGGG AATCGTACCC CGCACTCTTC TTTTTCTAGA
ACTCAACCAA GTACCGGCTC TCTTTTGGGC TGGGCCCTAG CCC

>Vigan.01G394000.01
TTACCATTGT GTGTATAAAG AAGATAAAAA TTTATTTAGA ACATATCCAA AGAAAGAAGA AAGAGAGAAG AACTGTGTTC
TTAGCCGTAG TTTTGTCTGT TTGTGAGGTG AGGCGCAGAC GAAGATGGAA GTTGTGTGTG GAAGTGGGGT TTGCGTCTCA
TCTCTTCCGC GCTCATCAAC GATTACCAGA AGCACTGTTC CTCAATTCCG AGTCAGTTAC CAATACCTAA CACCGTTTCC
TTCACAATCC CATCTATTCT CCTATCACCC TCCGCCCTAT GCTAAAACCC TCCGTGCCAG AACCACCACC AAACCCGCTA
TTTTCCTTCC CCACTTAGTT GCATCTCTGC AGCAAGTTGA CCAGACTTAC ATAATGGTGA AGCCCGACGG CGTGCAACGT
GGCCTCGTCG GAGAAATTAT TTCTAGGTTT GAGAAGAAGG GGTTTAAGTT GACTGGCTTG AAGCTCTTCC AGTGCTCTAA
AGAGTTAGCT GAGGAGCATT ACAAGGACCT AAACCAAAAG TCATTCTTCC CCAAGCTCAT TGACTATATT ACTTCTGGTC
CTGTTGTTTG TATGGCTTGG GAGGGTGTTG GAGTAGTGGC ATCCGCACGT AAGCTTATAG GGGCTACTGA TCCTCTTCAA
GCTGAACCAG GCACAATAAG AGGAGACCTT GCTGTTCAAA CAGGAAGGAA TGTAGTTCAT GGCAGTGACA GTCCCGAAAA
TGGAAAGCGT GAAATAGCTC TATGGTTCAA GGAAGGCGAA TTATGCGATT GGACCCCCGT TCAAGCACCG TGGCTGAGAG
AATAATGAAT CACAGATTTC CAGTTCCAAT ATTCATGCCA TTTCTAGTTT CAATAATGTA TCAATTGTTT TCGGCCTCAA
ATGTAGAACT ACATTAATTG TTGCTTAAAT TTTGTTAAAT TTTGCTGGAC TCGGATTCTT CTAGCCCATG CCATTTTCTT
TTTCTGTCAT GTCAGATTTA AACGGGTGAT GTGATTGAAG AATAATAGAA AATCTACCAT CTAGTGAAAT TTGCTCCTGA
AAGTGAGTCG AACCAGTGAA CAAGAATAAT GACTGCGACA GGCAAAAGAT TTTAACTAGC ATTTATACTT GAAACAAAAC
TGGTCCACAC CTGAATGTAA ACAGAAGAAT GGGATATAAT ACAACAGCTG GAAATAATTT GCATGGAACA GTGGCAGGTA
TACATATTTG TGTTGCTCAC TTCATTGCTT CCAGGTCATG ATAAATACAA CTCTAATCCG ACATTTCACA ATCTTGCAAA
ATTTGGACAC CGACCACTTC ATTTCTGCAA TCATAATCAA CAGAAGTTGA CGAGATACAT TCAGAACTTC CATTCTCCGA
TGAAGTTGTT GTCTTTGCAG AAGATGAAAC ATCCACATCT CCGGTATTCA CCACTCTAAA GAAATCTAGA ATGGTAAGAT
TAACTTGCCT TCGCAGTTCC GAGTTCCCAC TAGAAACAAT ATCACTAACC CTGGGAGAAG AGTTATCAGA CTCTGTATCC
ATCATCGTTT TCTCGGAACA TGAAGTGCTC TCTGGATTAA AATCTGGCTG ATTTGCTTCT TTAGCACAAG GTGAACTAAC
TGAAGAATCG TCTATAACCT CACTTGTATC GAGTCGCGCA CCAATCTTTA GCTTCATGAG AGTAGCCTCT GAATCGAAAA
GATATTATCA AGCCACATAC GCAAACAGTG TTGAGTGCGT AATTAAATCA ATAACCTAAA TTTTGTTTAA GCGAATTGAA
AGAGAGAGAG GGAGAGAGTG TGTACCGTAG ATGGAGAAGG TGTCATCTTT GAGAATCTTG GAAGGAGAAC CCTCTAATGT
TTCCAGTGAC GAAGTCGATG CCCTGATTCT GCCGAACATT TGTGATGCTA TCTTCGCTTC GGTTCTGTGC GCGTCGGGTA
TTCCGAAACG AAAAGATCAG AGAAAAGCAT AAATAGAGAG AGAAGCAGAA TTTTTGTTGG CGCCCTTTTT GTATTGAATT
ACGGAATTAG AGCGGGAATC GTACCCCGCA CTCTTCTTTT TCTAGAACTC AACCAAGTAC CGGCTCTCTT TTGGGCTGGG
CCCTAGCCC

>Vigan.01G394000.01
ATGGAAGTTG TGTGTGGAAG TGGGGTTTGC GTCTCATCTC TTCCGCGCTC ATCAACGATT ACCAGAAGCA CTGTTCCTCA
ATTCCGAGTC AGTTACCAAT ACCTAACACC GTTTCCTTCA CAATCCCATC TATTCTCCTA TCACCCTCCG CCCTATGCTA
AAACCCTCCG TGCCAGAACC ACCACCAAAC CCGCTATTTT CCTTCCCCAC TTAGTTGCAT CTCTGCAGCA AGTTGACCAG
ACTTACATAA TGGTGAAGCC CGACGGCGTG CAACGTGGCC TCGTCGGAGA AATTATTTCT AGGTTTGAGA AGAAGGGGTT
TAAGTTGACT GGCTTGAAGC TCTTCCAGTG CTCTAAAGAG TTAGCTGAGG AGCATTACAA GGACCTAAAC CAAAAGTCAT
TCTTCCCCAA GCTCATTGAC TATATTACTT CTGGTCCTGT TGTTTGTATG GCTTGGGAGG GTGTTGGAGT AGTGGCATCC
GCACGTAAGC TTATAGGGGC TACTGATCCT CTTCAAGCTG AACCAGGCAC AATAAGAGGA GACCTTGCTG TTCAAACAGG
AAGGAATGTA GTTCATGGCA GTGACAGTCC CGAAAATGGA AAGCGTGAAA TAGCTCTATG GTTCAAGGAA GGCGAATTAT
GCGATTGGAC CCCCGTTCAA GCACCGTGGC TGAGAGAATA A

>Vigan.01G394000.01
MEVVCGSGVC VSSLPRSSTI TRSTVPQFRV SYQYLTPFPS QSHLFSYHPP PYAKTLRART TTKPAIFLPH LVASLQQVDQ
TYIMVKPDGV QRGLVGEIIS RFEKKGFKLT GLKLFQCSKE LAEEHYKDLN QKSFFPKLID YITSGPVVCM AWEGVGVVAS
ARKLIGATDP LQAEPGTIRG DLAVQTGRNV VHGSDSPENG KREIALWFKE GELCDWTPVQ APWLRE*