Variant information

Chr01:53310021 - 53314783

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 [SNPs] [Indels] [SSR-associated indels]

SNPs

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
53310087GA491966.771.00UTR_5_PRIME(|58||None|Vigan.01G394000.01)Vigna nepalensis
53310718CG411571.771.00DOWNSTREAM(|4564||None|Vigan.01G394100.01), SPLICE_SITE_REGION(|||None|Vigan.01G394000.01), SYNONYMOUS_CODING(SILENT|gtC/gtG|V95|None|Vigan.01G394000.01)Vigna nepalensis
53310848CT311399.771.00DOWNSTREAM(|4434||None|Vigan.01G394100.01), INTRON(|||None|Vigan.01G394000.01)Vigna nepalensis
53310861CT361559.771.00DOWNSTREAM(|4421||None|Vigan.01G394100.01), INTRON(|||None|Vigan.01G394000.01)Vigna nepalensis
53311084TA552177.771.00DOWNSTREAM(|4198||None|Vigan.01G394100.01), INTRON(|||None|Vigan.01G394000.01)Vigna nepalensis
53311123AG471869.771.00DOWNSTREAM(|4159||None|Vigan.01G394100.01), INTRON(|||None|Vigan.01G394000.01)Vigna nepalensis
53311232AT441797.771.00DOWNSTREAM(|4050||None|Vigan.01G394100.01), INTRON(|||None|Vigan.01G394000.01)Vigna nepalensis
53311440CG301292.771.00DOWNSTREAM(|3842||None|Vigan.01G394100.01), INTRON(|||None|Vigan.01G394000.01)Vigna nepalensis
53311587GA522142.771.00DOWNSTREAM(|3695||None|Vigan.01G394100.01), INTRON(|||None|Vigan.01G394000.01)Vigna nepalensis
53312046TC491945.771.00DOWNSTREAM(|3236||None|Vigan.01G394100.01), INTRON(|||None|Vigan.01G394000.01)Vigna nepalensis
53312101GA521867.771.00DOWNSTREAM(|3181||None|Vigan.01G394100.01), INTRON(|||None|Vigan.01G394000.01)Vigna nepalensis
53312200AC381506.771.00DOWNSTREAM(|3082||None|Vigan.01G394100.01), SYNONYMOUS_CODING(SILENT|ggA/ggC|G200|None|Vigan.01G394000.01)Vigna nepalensis
53312337AG391544.771.00DOWNSTREAM(|2945||None|Vigan.01G394100.01), INTRON(|||None|Vigan.01G394000.01)Vigna nepalensis
53312356TG471880.771.00DOWNSTREAM(|2926||None|Vigan.01G394100.01), INTRON(|||None|Vigan.01G394000.01)Vigna nepalensis
53312493CA482119.771.00DOWNSTREAM(|2789||None|Vigan.01G394100.01), INTRON(|||None|Vigan.01G394000.01)Vigna nepalensis
53312494GC472119.771.00DOWNSTREAM(|2788||None|Vigan.01G394100.01), INTRON(|||None|Vigan.01G394000.01)Vigna nepalensis
53312569AT522187.771.00DOWNSTREAM(|2713||None|Vigan.01G394100.01), INTRON(|||None|Vigan.01G394000.01)Vigna nepalensis
53312597CT592478.771.00DOWNSTREAM(|2685||None|Vigan.01G394100.01), INTRON(|||None|Vigan.01G394000.01)Vigna nepalensis
53312629CT632627.771.00DOWNSTREAM(|2653||None|Vigan.01G394100.01), INTRON(|||None|Vigan.01G394000.01)Vigna nepalensis
53312828GA592258.771.00DOWNSTREAM(|2454||None|Vigan.01G394100.01), INTRON(|||None|Vigan.01G394000.01)Vigna nepalensis
53312904CT461866.771.00DOWNSTREAM(|2378||None|Vigan.01G394100.01), INTRON(|||None|Vigan.01G394000.01)Vigna nepalensis
53313048TC632827.771.00DOWNSTREAM(|2234||None|Vigan.01G394100.01), INTRON(|||None|Vigan.01G394000.01)Vigna nepalensis
53313058AT703033.771.00DOWNSTREAM(|2224||None|Vigan.01G394100.01), INTRON(|||None|Vigan.01G394000.01)Vigna nepalensis
53313129GC642472.771.00DOWNSTREAM(|2153||None|Vigan.01G394100.01), INTRON(|||None|Vigan.01G394000.01)Vigna nepalensis
53313299TA672469.771.00DOWNSTREAM(|1983||None|Vigan.01G394100.01), INTRON(|||None|Vigan.01G394000.01)Vigna nepalensis
53313318GT632361.771.00DOWNSTREAM(|1964||None|Vigan.01G394100.01), INTRON(|||None|Vigan.01G394000.01)Vigna nepalensis
53313358AG532209.771.00DOWNSTREAM(|1924||None|Vigan.01G394100.01), INTRON(|||None|Vigan.01G394000.01)Vigna nepalensis
53313645CA491827.771.00DOWNSTREAM(|1637||None|Vigan.01G394100.01), UTR_3_PRIME(|146||None|Vigan.01G394000.01)Vigna nepalensis
53313771GA542209.771.00DOWNSTREAM(|1511||None|Vigan.01G394100.01), UTR_3_PRIME(|272||None|Vigan.01G394000.01)Vigna nepalensis
53314093CG582291.771.00DOWNSTREAM(|1189||None|Vigan.01G394100.01), UTR_3_PRIME(|594||None|Vigan.01G394000.01)Vigna nepalensis
53314135TG592229.771.00DOWNSTREAM(|1147||None|Vigan.01G394100.01), UTR_3_PRIME(|636||None|Vigan.01G394000.01)Vigna nepalensis
53314475TA401527.771.00DOWNSTREAM(|807||None|Vigan.01G394100.01), UTR_3_PRIME(|976||None|Vigan.01G394000.01)Vigna nepalensis
53314664AT431626.771.00DOWNSTREAM(|618||None|Vigan.01G394100.01), UTR_3_PRIME(|1165||None|Vigan.01G394000.01)Vigna nepalensis

Indels

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
53310844GGTT261211.731.00DOWNSTREAM(|4437||None|Vigan.01G394100.01), INTRON(|||None|Vigan.01G394000.01)Vigna nepalensis
53311670GGTT662994.731.00DOWNSTREAM(|3611||None|Vigan.01G394100.01), INTRON(|||None|Vigan.01G394000.01)Vigna nepalensis
53312309TTGAA371668.731.00DOWNSTREAM(|2972||None|Vigan.01G394100.01), INTRON(|||None|Vigan.01G394000.01)Vigna nepalensis
53312386CAC481536.731.00DOWNSTREAM(|2895||None|Vigan.01G394100.01), INTRON(|||None|Vigan.01G394000.01)Vigna nepalensis
53313110GGATC652918.731.00DOWNSTREAM(|2171||None|Vigan.01G394100.01), INTRON(|||None|Vigan.01G394000.01)Vigna nepalensis
53313196ATA602380.731.00DOWNSTREAM(|2085||None|Vigan.01G394100.01), INTRON(|||None|Vigan.01G394000.01)Vigna nepalensis
53313593TTTTCGTGTTTGAACA482268.731.00DOWNSTREAM(|1688||None|Vigan.01G394100.01), UTR_3_PRIME(|95||None|Vigan.01G394000.01)Vigna nepalensis
53313758GGAAT532367.731.00DOWNSTREAM(|1523||None|Vigan.01G394100.01), UTR_3_PRIME(|260||None|Vigan.01G394000.01)Vigna nepalensis
53314454AAAGAGAG411778.731.00DOWNSTREAM(|827||None|Vigan.01G394100.01), UTR_3_PRIME(|956||None|Vigan.01G394000.01)Vigna nepalensis

SSR-associated indels

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
53310376(CT)11(CT)10341133.731.00DOWNSTREAM(|4905||None|Vigan.01G394100.01), INTRON(|||None|Vigan.01G394000.01)Vigna nepalensis