GBrowse Details

Vigan.01G353900.01

Basic Information:
Name: Vigan.01G353900.01
Multiple alignment
Variant Information
Position: Chr01:48869112..48873519 (+ strand)
Length: 4408
Functional Information:
Description: Similar to Uncharacterized protein. [I1K299, Glycine max]
GO: Biological Process: transport (GO:0006810)
Cellular Component: membrane (GO:0016020)
Molecular Function: transporter activity (GO:0005215)
InterPro: Natural resistance-associated macrophage like (IPR001046)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.02,0.29,10.13,2.28,42.59,19.07,36.22,7.58
Arabidopsis thaliana homolog: AT1G47240.1, AT2G23150.1, AT4G18790.1, AT5G67330.1
Automatic updates:
Name: NM_001249798 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max ferrous ion membrane transport protein DMT1 (DMT1), mRNA.
PubMed ID: 12887581 NCBI(pubmed)
Status: Known Variant
Name: NM_001357778 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max divalent metal ion transporter NRAMP2a (GMNRAMP2A), mRNA.
PubMed ID: 28868061 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr01:48869112..48869652 (+ strand)
Length: 541
Type: five_prime_UTR
Position: Chr01:48869653..48870191 (+ strand)
Length: 539
Type: CDS
Position: Chr01:48870683..48870819 (+ strand)
Length: 137
Type: CDS
Position: Chr01:48870920..48871572 (+ strand)
Length: 653
Type: CDS
Position: Chr01:48872931..48873116 (+ strand)
Length: 186
Type: CDS
Position: Chr01:48873117..48873519 (+ strand)
Length: 403
Type: three_prime_UTR

>Vigan.01G353900.01 class=Sequence position=Chr01:48869112..48873519 (+ strand)
CTTGTATGTT TCTGCATAAC TGCAATTTAT AAGTATGGTT CGTTTAGAAG ATGTTGTGAC TTTATTATGA TTTTATCATC
CACTTGGTTC TCATTTTGTA GAAATTTGAA TGGAATGAAG AACAGTACCA GCAATTTAAA ATCGTACTTA ACATAAATTC
ATAGAAATTG TCTCATGATC TAAATTGTGC TACAACACAA CATTTGTGCA TCGAAGATCT CACTTAATTT TTCTTAAAAA
TTTGCGAATG GGAAGGAAAT AACACGTTTT GGTGCTTTGA AGGAAACCAG TTATGGAAAA GCTGACGTGT AGAGGATGGT
GGTACGCACA CAAAGATATA TTCCATATGC GTGCTGCACA CACTCTCACC ATGGGCCAAG ATCACGAACG AAGTCCTCCA
CCTCATGTAA ACACATCACA AGATTGAGAC GGCACGTGAC ATGGTGACAC TCACAGCACC CTTTACCATT AAAATAATCC
AAAAGGGGTA GCTTTTATTC GTCAACGTCT CTTCTCGCTG CACTGATAAG ATTCCAACGC CATGTCTGGG AACACGGAAG
AGCAGCCATT GTTGCCGGAC TCCTTTCAGG CAGAAGAGGA GCTGCAAGAA ACTGCCTACG AATCCTCGGA GAAGATCGTG
GTCGTGGGAA TCGACGAGTC CGATAGCGAG GACAATTGGG GGAGAGTGCC TCCTTTCTCA TGGAAGAAGC TATGGCTCTT
TACTGGGCCG GGCTTTCTCA TGAGCATAGC GTTTCTGGAC CCGGGCAACC TCGAGGGGGA CCTTCAGGCC GGAGCTATTG
CCGGCTACTC CCTGCTGTGG CTTTTGATGT GGGCAACGGC CATGGGCCTC TTGATCCAGC TCCTCTCCGC CCGCCTCGGC
GTCGCCACCG GGAAGCACCT CGCTGAACTC TGCAGGGAAG AGTACCCTGC GTGGGCCCGG ATAGTGCTTT GGATCATGGC
CGAACTCGCT CTCATTGGCT CTGATATTCA GGAAGTTATT GGAAGCGCTA TTGCCATCAG GATTCTCAGT CGTGGGGTTG
TGCCCCTTTG GGCGGGAGTC GTCATCACTG CTCTTGATTG GTAATTTCAT TGCTCCGATG TTGTACTTGT TTGTGTTGTG
CGTGTTACTG TAATTTTCAA ATTGCAGAAC TACTATTTAT GTCTATGTAC TTACCACATT TTTTTATTGC AATATTTGCC
TAAATTCCTT CCTTCATTAA GCTGTCAGAG ATGTTGATAG ATCGTGTCCC AGCCATGATA AATTATGGGT TGTTCTGTCG
CTGGGGTTGG TTTATACATA TGATTGCTAT TTAAGTTCAA AAGTGAAGTT GAAGTCATCA TTGTATTTTT TTTTTAAGGA
GATATTGTAC AGATATTAGG AAATATAAGG TATTGGCCAC TATCATGAAT AGATTCTACC TGGGTATGTT TATTTTCCCA
AAAATAACTA TACCAAAATG CTTAGACCTC TCTACTACCC ATAGCATTTT TTGTTATGTT TTACTATGTC TGCCTTCAGG
GTAATCCAAA ATTAAACATG GGTACATGTA TATTTTGTTG CTTTTTTGTA GTTTTATTTT TCTCTTTCTA GAGAACTATG
GTGTGAGGAC ACTGGAAGCT CTTTTTGCTG TTCTCATTGG TGTGATGGCA ATCTCGTTCG CGTGGATGTT TGGTGAAGCA
AAGCCCAGTG GCAAGGAACT GCTTCTTGGT AAGGAATTTT AACACATTAG TCATTACAAG TCATTACAAG TAAGTGTCAG
GTCCCTTTTG TTTTGAATCT CATGGAGGGT TTGATTTTGT ATCTGCAGGC GTTTTGATTC CAAAACTCAG CTCTAGAACT
ATACAACAGG CTGTTGGAGT TGTGGGGTGC CTTATTATGC CGCACAATGT GTTCTTGCAC TCTGCTCTCG TTCAGTCAAG
GCAGGTTGAC CGCAGCAAGA AAGGCCGGGT TCAAGAAGCT CTTAATTATT ACTCTATAGA GTCCACCCTT GCCCTTGTTG
TCTCCTTTAT CATAAATATA TTTGTGACAA CAGTGTTCGC CAAGGGTTTT TATGGTTCTG AACTTGCAAA CAGCATTGGT
CTTGCAAATG CAGGACAGTA TCTTGAGGAG ACATATGGGG GTGGACTTTT TCCAATTTTA TACATATGGG GTATTGGGTT
ATTAGCAGCA GGTCAAAGTA GCACTATTAC TGGTACTTAT GCTGGACAAT TCATCATGGG AGGTTTTCTA AATTTGAGAT
TAAAGAAGTG GATGAGGGCA TTGATTACTC GAAGTTGTGC AATAATCCCA ACCATGATAG TTGCTCTTTT ATTTGACACC
TCCGAGGGAT CGTTAGATGT TCTGAATGAG TGGCTCAATG TTCTTCAGTC AGTTCAAATC CCCTTTGCAC TTATTCCCTT
GCTTTATCTG GTGTCAAAGG AGCAGATAAT GGGCACTTTC AGAATTGGCT ATGTTCTCAA GGTATATATA TTGTCATTCA
ATCTGCATTT TAATCTCACT GGTCACTTAT GTGATGCTAC TATTAGTTTA TGTATGTGAT AATGGACTTT ATGATGCCAA
CTTAATTCAT TTTACACGAG ATTGCTGTCT GTATATGCTT ATATTGTTTG GTCAATGGTA TCAAACTTCA AATTTAACTA
GGAAGGATAT AATTTAGAAA TTACACGATA TATAGATCCC TTTTCTTCTT GGTTTTGGAG ACAATTTAGA ACTTACTCAA
TGGACCCCTT ATCTCTTTGC AATTTCGAGT TTGATTCTGA ACAGACAAAT TATTAGGCTT GATTTTACTT CTGCCTTGAG
AATTGGAAAA TGTGTGATGG ACTACTACCG TTCCATCTTC TTCCTTTATG ATCATACGTA TAATGGAATG TTTTTTATCT
TGCAAATAAC TATCCCGTGT CATTATAAGT ACATAATAAA GTACCACGGA GTTTTTTTTA ATCCTTTGTT ACTTGTCATT
GTAATAATGA TTTGTTCAAT ATGAATATGT TATGCAACAT AATAAATATT CCTGCTGCTA GAAACGGCAC AGATGACAGC
ATTGATATTA CTTTGTTGCA GAAAAGTATG CATCGATTCT TCCTCTTTTC TCGAGGGCGT TATTTCTCTT TTTGTCCTCA
TTTATTTCAA GTTGCCATTA AATGACTTAA TACGTCATTA GTATTATTTA TACATGAAGC CCACATATTT GAAATAGTCG
ATCATTCACT TGCATGCGAG GTTTGCTTCA TACGCAAATG CAGGCATAAT TATTTTTGTT GCGGAATTTG ATTGTGTTAG
AAAATTAATC TAGTGTTGGG GGATATAGTG GAAAATAGGG GATGGTGTCA CTTCCTTTCC TTCATTCTGC TGGGTCTATG
ACTGTGGAGT GTATGTATTG TTATTTTGGA TATTCTTTAG AATCGAACTC TAACGTCCAA TATTTCAAAT CTATGAAAGA
ACTCCCACTT GAATTCTTTG TCCGTAACAG TTTGGAGAAA CAGATGCCCC ATTTGATACT GATTTGCATT TATTAATGTA
AGAAGATAAT ATCTGTCTGT GTTGTATTAC CTGGGTAGAT AGGTTGACAT ACATTTTGAT AATATAACTT TAGGTATAGT
AGACAAAATA TACGTTTTAA AATTTTGCTT CTTTCCTTTC ATTGTTCTTT TGGATCTGGT GAATTGATGC TGTGCGTTTT
CTCCATTGAA ATTTCTCAGT TTTTTTGGCT TTTAGAGGAT TTTCTGTGGA TCTTGAATGC ATTTATTTGG TTTCTGTCCC
AAATTATGTT CATAGTCTGT TCTCATTAAG TACTGAATTG ACTTATGACA TGGATGCAGA TTACATCATG GCTTGTGGCT
GCTCTGGTGA TAGTGATTAA TGGCTATCTT TTGATGGAAT TCTTTTCCTC CGAAGTTAAT GGTCCCTTGT TTGGCGCTGT
AGTGGGTGCA ATAACTGCTG CATATGTTGC ATTCTTACTA TACCTTATAT GGAGGGCCAT TGCTTTTTAC CTTGGCAAAG
CATAATACGA CCAAAGACAA ATTGCTCATT CAGAGAGTTA AGTGATCAAT CTTTAAATAT GCAGAATAGG AAGTGTGGTC
CATTTTCTCG CCATTGTTAT TAGTATGACT AGTCGATGCA TTGGGCAGTG GCACCTTACT GTTTGCCTGT AACTATAAAC
TATGGCAGAT GGCAGAGTAG ATTTTAGCAC TGTGTAATGT GTTACTGTCC AATTTTGTTG TCAAAATGCC TTGGAAGAAC
ACTAATTAGT TGAGGCAACC TTCGAAGCTT AATGTGCAAG CAATAAAAGT AGTTCTTTTC TTTTTCTTTT TCCTTGCTCT
TGTTCATATT CTATCCGAGG AGCTGTGATA AATAAGGTTA TACCAAATAA TCAAAGCTAC TTGGTAATAT AATCTCTTAA
GGTAACAA

>Vigan.01G353900.01
CTTGTATGTT TCTGCATAAC TGCAATTTAT AAGTATGGTT CGTTTAGAAG ATGTTGTGAC TTTATTATGA TTTTATCATC
CACTTGGTTC TCATTTTGTA GAAATTTGAA TGGAATGAAG AACAGTACCA GCAATTTAAA ATCGTACTTA ACATAAATTC
ATAGAAATTG TCTCATGATC TAAATTGTGC TACAACACAA CATTTGTGCA TCGAAGATCT CACTTAATTT TTCTTAAAAA
TTTGCGAATG GGAAGGAAAT AACACGTTTT GGTGCTTTGA AGGAAACCAG TTATGGAAAA GCTGACGTGT AGAGGATGGT
GGTACGCACA CAAAGATATA TTCCATATGC GTGCTGCACA CACTCTCACC ATGGGCCAAG ATCACGAACG AAGTCCTCCA
CCTCATGTAA ACACATCACA AGATTGAGAC GGCACGTGAC ATGGTGACAC TCACAGCACC CTTTACCATT AAAATAATCC
AAAAGGGGTA GCTTTTATTC GTCAACGTCT CTTCTCGCTG CACTGATAAG ATTCCAACGC CATGTCTGGG AACACGGAAG
AGCAGCCATT GTTGCCGGAC TCCTTTCAGG CAGAAGAGGA GCTGCAAGAA ACTGCCTACG AATCCTCGGA GAAGATCGTG
GTCGTGGGAA TCGACGAGTC CGATAGCGAG GACAATTGGG GGAGAGTGCC TCCTTTCTCA TGGAAGAAGC TATGGCTCTT
TACTGGGCCG GGCTTTCTCA TGAGCATAGC GTTTCTGGAC CCGGGCAACC TCGAGGGGGA CCTTCAGGCC GGAGCTATTG
CCGGCTACTC CCTGCTGTGG CTTTTGATGT GGGCAACGGC CATGGGCCTC TTGATCCAGC TCCTCTCCGC CCGCCTCGGC
GTCGCCACCG GGAAGCACCT CGCTGAACTC TGCAGGGAAG AGTACCCTGC GTGGGCCCGG ATAGTGCTTT GGATCATGGC
CGAACTCGCT CTCATTGGCT CTGATATTCA GGAAGTTATT GGAAGCGCTA TTGCCATCAG GATTCTCAGT CGTGGGGTTG
TGCCCCTTTG GGCGGGAGTC GTCATCACTG CTCTTGATTG TTTTATTTTT CTCTTTCTAG AGAACTATGG TGTGAGGACA
CTGGAAGCTC TTTTTGCTGT TCTCATTGGT GTGATGGCAA TCTCGTTCGC GTGGATGTTT GGTGAAGCAA AGCCCAGTGG
CAAGGAACTG CTTCTTGGCG TTTTGATTCC AAAACTCAGC TCTAGAACTA TACAACAGGC TGTTGGAGTT GTGGGGTGCC
TTATTATGCC GCACAATGTG TTCTTGCACT CTGCTCTCGT TCAGTCAAGG CAGGTTGACC GCAGCAAGAA AGGCCGGGTT
CAAGAAGCTC TTAATTATTA CTCTATAGAG TCCACCCTTG CCCTTGTTGT CTCCTTTATC ATAAATATAT TTGTGACAAC
AGTGTTCGCC AAGGGTTTTT ATGGTTCTGA ACTTGCAAAC AGCATTGGTC TTGCAAATGC AGGACAGTAT CTTGAGGAGA
CATATGGGGG TGGACTTTTT CCAATTTTAT ACATATGGGG TATTGGGTTA TTAGCAGCAG GTCAAAGTAG CACTATTACT
GGTACTTATG CTGGACAATT CATCATGGGA GGTTTTCTAA ATTTGAGATT AAAGAAGTGG ATGAGGGCAT TGATTACTCG
AAGTTGTGCA ATAATCCCAA CCATGATAGT TGCTCTTTTA TTTGACACCT CCGAGGGATC GTTAGATGTT CTGAATGAGT
GGCTCAATGT TCTTCAGTCA GTTCAAATCC CCTTTGCACT TATTCCCTTG CTTTATCTGG TGTCAAAGGA GCAGATAATG
GGCACTTTCA GAATTGGCTA TGTTCTCAAG ATTACATCAT GGCTTGTGGC TGCTCTGGTG ATAGTGATTA ATGGCTATCT
TTTGATGGAA TTCTTTTCCT CCGAAGTTAA TGGTCCCTTG TTTGGCGCTG TAGTGGGTGC AATAACTGCT GCATATGTTG
CATTCTTACT ATACCTTATA TGGAGGGCCA TTGCTTTTTA CCTTGGCAAA GCATAATACG ACCAAAGACA AATTGCTCAT
TCAGAGAGTT AAGTGATCAA TCTTTAAATA TGCAGAATAG GAAGTGTGGT CCATTTTCTC GCCATTGTTA TTAGTATGAC
TAGTCGATGC ATTGGGCAGT GGCACCTTAC TGTTTGCCTG TAACTATAAA CTATGGCAGA TGGCAGAGTA GATTTTAGCA
CTGTGTAATG TGTTACTGTC CAATTTTGTT GTCAAAATGC CTTGGAAGAA CACTAATTAG TTGAGGCAAC CTTCGAAGCT
TAATGTGCAA GCAATAAAAG TAGTTCTTTT CTTTTTCTTT TTCCTTGCTC TTGTTCATAT TCTATCCGAG GAGCTGTGAT
AAATAAGGTT ATACCAAATA ATCAAAGCTA CTTGGTAATA TAATCTCTTA AGGTAACAA

>Vigan.01G353900.01
ATGTCTGGGA ACACGGAAGA GCAGCCATTG TTGCCGGACT CCTTTCAGGC AGAAGAGGAG CTGCAAGAAA CTGCCTACGA
ATCCTCGGAG AAGATCGTGG TCGTGGGAAT CGACGAGTCC GATAGCGAGG ACAATTGGGG GAGAGTGCCT CCTTTCTCAT
GGAAGAAGCT ATGGCTCTTT ACTGGGCCGG GCTTTCTCAT GAGCATAGCG TTTCTGGACC CGGGCAACCT CGAGGGGGAC
CTTCAGGCCG GAGCTATTGC CGGCTACTCC CTGCTGTGGC TTTTGATGTG GGCAACGGCC ATGGGCCTCT TGATCCAGCT
CCTCTCCGCC CGCCTCGGCG TCGCCACCGG GAAGCACCTC GCTGAACTCT GCAGGGAAGA GTACCCTGCG TGGGCCCGGA
TAGTGCTTTG GATCATGGCC GAACTCGCTC TCATTGGCTC TGATATTCAG GAAGTTATTG GAAGCGCTAT TGCCATCAGG
ATTCTCAGTC GTGGGGTTGT GCCCCTTTGG GCGGGAGTCG TCATCACTGC TCTTGATTGT TTTATTTTTC TCTTTCTAGA
GAACTATGGT GTGAGGACAC TGGAAGCTCT TTTTGCTGTT CTCATTGGTG TGATGGCAAT CTCGTTCGCG TGGATGTTTG
GTGAAGCAAA GCCCAGTGGC AAGGAACTGC TTCTTGGCGT TTTGATTCCA AAACTCAGCT CTAGAACTAT ACAACAGGCT
GTTGGAGTTG TGGGGTGCCT TATTATGCCG CACAATGTGT TCTTGCACTC TGCTCTCGTT CAGTCAAGGC AGGTTGACCG
CAGCAAGAAA GGCCGGGTTC AAGAAGCTCT TAATTATTAC TCTATAGAGT CCACCCTTGC CCTTGTTGTC TCCTTTATCA
TAAATATATT TGTGACAACA GTGTTCGCCA AGGGTTTTTA TGGTTCTGAA CTTGCAAACA GCATTGGTCT TGCAAATGCA
GGACAGTATC TTGAGGAGAC ATATGGGGGT GGACTTTTTC CAATTTTATA CATATGGGGT ATTGGGTTAT TAGCAGCAGG
TCAAAGTAGC ACTATTACTG GTACTTATGC TGGACAATTC ATCATGGGAG GTTTTCTAAA TTTGAGATTA AAGAAGTGGA
TGAGGGCATT GATTACTCGA AGTTGTGCAA TAATCCCAAC CATGATAGTT GCTCTTTTAT TTGACACCTC CGAGGGATCG
TTAGATGTTC TGAATGAGTG GCTCAATGTT CTTCAGTCAG TTCAAATCCC CTTTGCACTT ATTCCCTTGC TTTATCTGGT
GTCAAAGGAG CAGATAATGG GCACTTTCAG AATTGGCTAT GTTCTCAAGA TTACATCATG GCTTGTGGCT GCTCTGGTGA
TAGTGATTAA TGGCTATCTT TTGATGGAAT TCTTTTCCTC CGAAGTTAAT GGTCCCTTGT TTGGCGCTGT AGTGGGTGCA
ATAACTGCTG CATATGTTGC ATTCTTACTA TACCTTATAT GGAGGGCCAT TGCTTTTTAC CTTGGCAAAG CATAA

>Vigan.01G353900.01
MSGNTEEQPL LPDSFQAEEE LQETAYESSE KIVVVGIDES DSEDNWGRVP PFSWKKLWLF TGPGFLMSIA FLDPGNLEGD
LQAGAIAGYS LLWLLMWATA MGLLIQLLSA RLGVATGKHL AELCREEYPA WARIVLWIMA ELALIGSDIQ EVIGSAIAIR
ILSRGVVPLW AGVVITALDC FIFLFLENYG VRTLEALFAV LIGVMAISFA WMFGEAKPSG KELLLGVLIP KLSSRTIQQA
VGVVGCLIMP HNVFLHSALV QSRQVDRSKK GRVQEALNYY SIESTLALVV SFIINIFVTT VFAKGFYGSE LANSIGLANA
GQYLEETYGG GLFPILYIWG IGLLAAGQSS TITGTYAGQF IMGGFLNLRL KKWMRALITR SCAIIPTMIV ALLFDTSEGS
LDVLNEWLNV LQSVQIPFAL IPLLYLVSKE QIMGTFRIGY VLKITSWLVA ALVIVINGYL LMEFFSSEVN GPLFGAVVGA
ITAAYVAFLL YLIWRAIAFY LGKA*