GBrowse Details

Vigan.01G341500.01

Basic Information:
Name: Vigan.01G341500.01
Multiple alignment
Variant Information
Position: Chr01:47393458..47398842 (- strand)
Length: 5385
Functional Information:
Description: Similar to autophagy-related protein 101-like. [XP_004509180.1, Cicer arietinum]
InterPro: Autophagy-related protein 1010 (IPR012445)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:16.88,12.72,13.70,11.97,16.02,18.45,16.07,12.81
Arabidopsis thaliana homolog: AT5G66930.3
Automatic updates:
Name: NM_001255520 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max autophagy-related protein 101-like (LOC100811916), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:47393458..47393960 (- strand)
Length: 503
Type: three_prime_UTR
Position: Chr01:47393961..47394036 (- strand)
Length: 76
Type: CDS
Position: Chr01:47397395..47397560 (- strand)
Length: 166
Type: CDS
Position: Chr01:47397697..47397856 (- strand)
Length: 160
Type: CDS
Position: Chr01:47397957..47398052 (- strand)
Length: 96
Type: CDS
Position: Chr01:47398414..47398499 (- strand)
Length: 86
Type: CDS
Position: Chr01:47398595..47398664 (- strand)
Length: 70
Type: CDS
Position: Chr01:47398665..47398842 (- strand)
Length: 178
Type: five_prime_UTR

>Vigan.01G341500.01 class=Sequence position=Chr01:47393458..47398842 (- strand)
TCTGTTATGG GTAAAGAAGG GAAAGTCATC ATCTGCGCTT TCTCTCCCAC TCTGATAGCT AACATGAAGA ACTAATAGTA
ATTAGGAACT TGTACAGTAG GATCACGAAC ACTCTACGTT TTTTCTTCTC CTCTTCCTAC ACCTACACCA CGCAGCCTTC
CTAGGGTTTC ATTCGATCAT GAACTGTGAG GTCTGTCAGC TCAAGGAATT AGAACTCGAG CATTTCGAGA TACGTGAGGT
TTTGCGATGT AATTCCGCTG CTCCTATTGC TAATCAATTT TCTCAATTAT GATTTTGTTG TTGGTTTTGT TCAATTGCAA
TAACCACAGT GACGGTGTTG CAGGCATATT GCACACCATC GTCTTTCACC GTGCCTTGGG TCTTGTGCGC CCTAAAGACG
TTGACTTGGA GCTTTTTGAT GTAACTTACG TATGTTTTCT ATCTCAATAT AGGGCTATTA TCACTTGTGC TTCAATATCT
TTAGTACTCT TTTTAACTGT CATATATCCA TTACAATCAC TTATAAGTGC ATGTTTGGTT TCGAGTTGAA GAATGGTTCT
GGTCTAAAAT TAAGTGAGTT GAAGCAAGTT TAGATAGACT TTAGGTTGAA AAACAAATTT TTATATTGAA TTTTATTACT
ATGTTACTTT TAGTATAAAA ACAGCTAAGT ATATATTGCT TCACTTCTAA ACAAATTTTA ATCAGAATCA ATTTTGCAAA
CACTCACCTA AACACGCTAA ATAAACTAAT TGTATTGTGT TCTGTTTTTT ATATCATTCT TGGTGCGTAG GTGCAATGTG
GAGAGGCAGA GCTTGAAAAG AAAATAGATG AAAAGATTGA GCAGTTTGTT TGTTGGGTGG AGAAGCACCC AAACAAAAAG
AGTCAGGTCA GTGATATGGT GAAAATGGTG ATAGTAGGGT TATTGTATTT TGATTTTGTT TTGTTGTAAT TAGTATTTTG
ACGGGGTTGT GAATTGGATA GTGCAGATAT GTTTATCTTT CTATGAGGTG AAAAACAAAC AGGCGTCTTG GTTCAGTAAC
AAGATTGAAC GTTTGTATTG GGAGCAGTGG TATATTAATC TGAATGTGGC TCAGCATAAG TTGCATTCTA GCAAGTATCA
TCATCCCAAA GTTGTAGATC CAGGAGGTGC AGTTGCTTGT TCTGTTTGTC AAACTAAATC TCTTATGATG TTTCACTCCT
ACTAATTTAG TGTTTTCACT CCTTTACTTA GACGTTTATT GGTAGGATGC TGTTTACCTC CGTTTGTGTT TCTTATGTGT
AGAGGGAGCG TTGGAGGATA GAAATGCCCG TAGTGCAGCA CTGGAGGCAG CACTGCGTGA GGTTTTGTTT CAGATAATTA
AATTTGTTAA TGAGAAAAAG GATCACGTTC CACCAATTCC AAATCTTGAG GGCGCTGTTT CATTTCCCTA TGAAATTACA
ATACCTAGGT GAGTTGTGTG TACACCTTAT CAGTTGTGAT TTTGCATTTC TTATATTTCT TTAATATTCT GACCGCTCTG
ATTTTAAGGC AGTGTTCTAC TTGGTTGATT GTGTTGATAA CATGATATCT TTCAAGTTTT CTTTTTTCAA TATGACTTGT
AGAAAATCTA TGAGCTATTG GAGTCCAAGG TTTTTGGATT GAGTGGGATT AAGTTGAAGT ACATATATTG TAATAAAATG
TAGTAAGATG AAATAAACAA TGCTCTAGAG GTAAAATTTC AGAATAACAC TGCCACAAAC TGCACAATTT AGGCATCTTA
GGTCCAACAC TGGGGGACCA TTCAAAGGAT TCGAAAGTGC TTGTGATCAT GAATTATCTA CGAAATTAGA AAGGGATTTG
ATAATGCACA GGTTGTAGTT TATATTGGTC AGTCAAGTGC AAAAAAGGGT TCAGTGCATA GGGAAGGCCG TGGTAGATTA
GTGGATTTAC TAGAAATATA AAATTAGGGA CAATCGTATA TGAGAGAAAA ACTGAGTGAC ATTTTTCAAG TAAAAGATGG
CAAAAACTTA CCCTATATAT GGCTTGGTCA TGTTAGTAGT CCAATGAAAT AATAAAATGT TAAGAATTAA GATAAGACCT
CCCCCTCCTC ACCCAGTAGA TGAGAACTAT TTGAAAATAC TCCATTCTAA ATGGCTTTTC TCTTTCACTG CAAATTAAGT
TTTGACTGGA CCACACTGGC GTCAAATGAT CCATACAGCT AACTCCACAT AGTGAGATTA GGCTTTACTG TTAATTTTAC
TCGTAATTAG GTGGAGGCAG AAAAAAATTG AATGGCTATG GTCTAGCTTG GTGGAAAGAA TTGCAGACTT TAATGCGTAC
TGCAATGAAT TTTGCTGTAG AGTTTAGTGG AAGAGAGACC AGCCAGATAA CAGAAATTAC ATTTTCATGA AAACTATTTT
CAAGGTAGTG TTTAGTAACA TGCATTGCTT AAGCGGCATT GCATGAGCTT ATTGTTTTGA GAATGTAAAT TTATTGAAAG
GAAGCTGTCT CTTCTGCATA ACTTGAAAAG TTTGAAATCA TAAATGGTTT GATATAGACT GGGATCAGTG TTGAAAATTA
CTGTTGGCAG AGTTTAATGG AAGAGAGACC AGGGCAGAGA ACATAAATTA CATTTTCATG AAAACTATTT TCAGGGTAGT
GTTTAGTAAC ATTCATTGTT TAAGAGCATT GCATCAGCTT ATTGTTTGGA GAATGTAAAT TTATTGAGAA GGTATCTATT
CTGCATAACT TGAAAAGTTT CAAATCATAA ATTGTTTTGT ATGGATTGGG ATCAGTGTTA AAGAATATTT GTGTCGACAT
TATTTAGTAT GTGATATTTG TTACCCACTA ATTTTACCTA ATTTCATGAC AAAACTTTTT ACTGTAATTT GAATGTCCAC
CCTTTTGCTT TACCTATTTT CTTGCTTTGT TTGTGATGAA TCATTTGTAA ATAAAGGTGT CATTACTAGT TAGGTAAGAC
ATCTCTAATT CGACAAATTC AAGTCGGATG CTTGCATCAT GTTCTCTGTT TGAAATTGTT TGTATTCATT CGGACTTAAT
GCTTATGATA GCTAAAAGGT AGATTCATTT GTAGTGGCTT ATCATTTTCC TAGGGCGTTG CATCATCCAA TTATTGCTCT
TAATGTAGTT CAACATGAAT GATTATAAAT AGAGATGCTG CTTAGTACTT CTTCACTCGA GCATTTCACC AAAATCTAGT
CTTCAACTTG GTACTAACTT TAGCATTTCA CCAAAATTTA GTCTTCAACT TTGTACTAGA GTAGGTTTAT TGCCGCTCTG
CTTGTCTCTG TTTTTGACAT TTTTCTGTGT TGTCTGCTAT TGTCAGTCAC CAACTGTAGC ACTGTACATA ATTTGATACT
TTTCGTCCAC TGTGCATTTG TACACTGTTC ACTGTTGTTT TATGTGTGCT TCAAGATATT CTCAAGTGTT TAAGGAAACA
TGTCAGAAGC AGGGTTTTTT TTTCAGTAGT GCCTCAAGGC ATAGTATTAA TTGAAGACCA TGCATAATAG ATTCAAGCGA
ATTTATCGTG ATGGCTCTTT ATTCTCCTTA ATGTCTCCTA AATTTCATCA TATCTTCAAC ATAGCAAATG GTAAATGTAC
ACAGCCTTAA CTCTTGCAAG CAGAGATTTC TTTCTAGGAT TTGAACCCAT GTTCTCTAGT TCACAAGGAA TCCGTCCCTT
CTTGTTGCAC CAAAGTTCTT TCTTTTAGCA GAATGAATGC CTTGACCTTG ATAGCTTATA TTCCCTACTT ATTGGGGAGC
CCCTCCATCT ATCATTGTAG AATAGGTATT ACAACTATAT TTTTCATGAC CTTTACTTTA TATTATTTTG TTGTCACTTA
TTACTAATAT TTCTAAAATT TTGTGTCACT GCAAAAGTAT TCCCTAAATT AACTGGTCAA ATGCTAATTA GGGTCTCTGC
AAAACAATTC TGTGATATTT GCTTTGTGAT CGGCGACACT ATAAAGAGCT TTTAGAATTA TTGTTGAAAA GTTCTCTACA
TTGTGGTCTC TTTTAGATTG TCTTAGGTGC GGTCCCTTTG AGAACTACCT TAATGGCAAT CTCAAGGGTG GTGATTTAGT
TTCATCTAAC TTAAATAAAG TTTGTAGAGT TTAAACAGTT CTCATTGGAC AAGACAGTTT TGTAGAATCA AGTTATGTTA
TAGATCCAAA TTCTAAGATA GCATTAGACG GCCATCTTTT TGTGGCAATC TTAATTGCAG TCTCATGTGT GTGATGGTAT
AGTCTGATAT TGATTATAGA CACGACTTGA TAATAAAACT TATAAAATTT GAACAATCCT TACCTTACAA TCTAATGAGA
TAAACCTAAA CCCATATTTT AAGAATTATC ATAAAACATA ATTTATTTAT TGATATTATA TTTTTTTTTG TTATTCTAAA
ACTGAAAGAG GAAAACAGAA TTTCAAAGAC GTGACAATCT GAAATAGATG TCTTGCAGCA AATATATAAA AACACAATAA
GCAACATCTC CAAAATTCTA GCAGCAACAA GTCAAACTAA TAACCACTCT TTTAGCAACA TATCCCATAC ATTAATGATA
TACTGCCTTG AGATTATATT TTTTTATTTT TATTTTGAAA AGCTGAAGGA AATATAATTT GTTAAGATCT TCAGATTGGT
TGTTTAGTAT AAACAACAAT TATTCCATGA GCCTAGATTT ACAGAATATC TATATTGGAT GAGATTACTA CCCTCCGCAT
CTTGCGTCAT GAATTGTAGT TAGTTACTTT TACTTTTGAA AGTTATGCTG AAGCTGCTGA GTTAACCTTG TGCTGTCAAT
GACCAGTTCA TCAGATTCTG CATTTGGGAT GGACATGATC AAGAGAATGC TCCAGACAGG GCATCCAACA ATGCTAAGTT
GATTGTCAAA GTTTGTAGAG CGGTCTATGG GGTTAAAGGT ATTCTTGTTC ATATGTTTAA GCTTGAAATA TGATGCTAAA
GAAAGCCAAG GAATGCAGGG TTCAATCTCA TCGTGGATAG CATATAGCAG AATCTATAGG TGCAAAATGA CTTAAATATA
TATTTTTTCA AATATACATC CTTGTTAAAG CTCTCGTTTT GTATCTAGTC TTTATTCTAC TCATCTCTCA ACACATTTAT
CCATGGTAAC TGAAACGCTT CATTCCTTTG AAGCATAACA GGAAGTTAAT CTTGAATTTA GGTCTTTCAG TTTATATGAT
ATAGTGGTGA AGTCGTTGAG AAATTTGCAG TAAAGATTAT GATAAAATAT AGAAATGCTT TCAGTAAATT ATGGAATTAT
CAGCATATTG ATTATTTATT TTTGAATCGA TATTTGTTAC TTCGTAATCT GTTTGTCTAA ATTGCGTCAC GACACCTTCC
CTCGTTACCT GGGTCACGAA TGGGA

>Vigan.01G341500.01
TCTGTTATGG GTAAAGAAGG GAAAGTCATC ATCTGCGCTT TCTCTCCCAC TCTGATAGCT AACATGAAGA ACTAATAGTA
ATTAGGAACT TGTACAGTAG GATCACGAAC ACTCTACGTT TTTTCTTCTC CTCTTCCTAC ACCTACACCA CGCAGCCTTC
CTAGGGTTTC ATTCGATCAT GAACTGTGAG GTCTGTCAGC TCAAGGAATT AGAACTCGAG CATTTCGAGA TACGTGAGGT
TTTGCGATGC ATATTGCACA CCATCGTCTT TCACCGTGCC TTGGGTCTTG TGCGCCCTAA AGACGTTGAC TTGGAGCTTT
TTGATGTAAC TTACGTGCAA TGTGGAGAGG CAGAGCTTGA AAAGAAAATA GATGAAAAGA TTGAGCAGTT TGTTTGTTGG
GTGGAGAAGC ACCCAAACAA AAAGAGTCAG ATATGTTTAT CTTTCTATGA GGTGAAAAAC AAACAGGCGT CTTGGTTCAG
TAACAAGATT GAACGTTTGT ATTGGGAGCA GTGGTATATT AATCTGAATG TGGCTCAGCA TAAGTTGCAT TCTAGCAAGT
ATCATCATCC CAAAGTTGTA GATCCAGGAG AGGGAGCGTT GGAGGATAGA AATGCCCGTA GTGCAGCACT GGAGGCAGCA
CTGCGTGAGG TTTTGTTTCA GATAATTAAA TTTGTTAATG AGAAAAAGGA TCACGTTCCA CCAATTCCAA ATCTTGAGGG
CGCTGTTTCA TTTCCCTATG AAATTACAAT ACCTAGTTCA TCAGATTCTG CATTTGGGAT GGACATGATC AAGAGAATGC
TCCAGACAGG GCATCCAACA ATGCTAAGTT GATTGTCAAA GTTTGTAGAG CGGTCTATGG GGTTAAAGGT ATTCTTGTTC
ATATGTTTAA GCTTGAAATA TGATGCTAAA GAAAGCCAAG GAATGCAGGG TTCAATCTCA TCGTGGATAG CATATAGCAG
AATCTATAGG TGCAAAATGA CTTAAATATA TATTTTTTCA AATATACATC CTTGTTAAAG CTCTCGTTTT GTATCTAGTC
TTTATTCTAC TCATCTCTCA ACACATTTAT CCATGGTAAC TGAAACGCTT CATTCCTTTG AAGCATAACA GGAAGTTAAT
CTTGAATTTA GGTCTTTCAG TTTATATGAT ATAGTGGTGA AGTCGTTGAG AAATTTGCAG TAAAGATTAT GATAAAATAT
AGAAATGCTT TCAGTAAATT ATGGAATTAT CAGCATATTG ATTATTTATT TTTGAATCGA TATTTGTTAC TTCGTAATCT
GTTTGTCTAA ATTGCGTCAC GACACCTTCC CTCGTTACCT GGGTCACGAA TGGGA

>Vigan.01G341500.01
ATGAACTGTG AGGTCTGTCA GCTCAAGGAA TTAGAACTCG AGCATTTCGA GATACGTGAG GTTTTGCGAT GCATATTGCA
CACCATCGTC TTTCACCGTG CCTTGGGTCT TGTGCGCCCT AAAGACGTTG ACTTGGAGCT TTTTGATGTA ACTTACGTGC
AATGTGGAGA GGCAGAGCTT GAAAAGAAAA TAGATGAAAA GATTGAGCAG TTTGTTTGTT GGGTGGAGAA GCACCCAAAC
AAAAAGAGTC AGATATGTTT ATCTTTCTAT GAGGTGAAAA ACAAACAGGC GTCTTGGTTC AGTAACAAGA TTGAACGTTT
GTATTGGGAG CAGTGGTATA TTAATCTGAA TGTGGCTCAG CATAAGTTGC ATTCTAGCAA GTATCATCAT CCCAAAGTTG
TAGATCCAGG AGAGGGAGCG TTGGAGGATA GAAATGCCCG TAGTGCAGCA CTGGAGGCAG CACTGCGTGA GGTTTTGTTT
CAGATAATTA AATTTGTTAA TGAGAAAAAG GATCACGTTC CACCAATTCC AAATCTTGAG GGCGCTGTTT CATTTCCCTA
TGAAATTACA ATACCTAGTT CATCAGATTC TGCATTTGGG ATGGACATGA TCAAGAGAAT GCTCCAGACA GGGCATCCAA
CAATGCTAAG TTGA

>Vigan.01G341500.01
MNCEVCQLKE LELEHFEIRE VLRCILHTIV FHRALGLVRP KDVDLELFDV TYVQCGEAEL EKKIDEKIEQ FVCWVEKHPN
KKSQICLSFY EVKNKQASWF SNKIERLYWE QWYINLNVAQ HKLHSSKYHH PKVVDPGEGA LEDRNARSAA LEAALREVLF
QIIKFVNEKK DHVPPIPNLE GAVSFPYEIT IPSSSDSAFG MDMIKRMLQT GHPTMLS*