GBrowse Details

Vigan.01G286100.01

Basic Information:
Name: Vigan.01G286100.01
Multiple alignment
Variant Information
Position: Chr01:40687636..40689298 (+ strand)
Length: 1663
Functional Information:
Description: Similar to Uncharacterized protein. [I1JEY3, Glycine max]
GO: Biological Process: oxidation-reduction process (GO:0055114)
Molecular Function: iron ion binding (GO:0005506)
Molecular Function: oxidoreductase activity (GO:0016491)
Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors (GO:0016706)
InterPro: Isopenicillin N synthase (IPR002283)
Oxoglutarate/iron-dependent dioxygenase (IPR005123)
Non-haem dioxygenase N-terminal domain (IPR026992)
Isopenicillin N synthase-like (IPR027443)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.31,0.28,14.61,27.69,75.52,28.29,75.12,5.60
Automatic updates:
Name: NM_001252693 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max gibberellin 20 oxidase 1-like (LOC100809985), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001255459 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max gibberellin 20 oxidase 1-like (LOC100807298), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:40687636..40687689 (+ strand)
Length: 54
Type: five_prime_UTR
Position: Chr01:40687690..40688159 (+ strand)
Length: 470
Type: CDS
Position: Chr01:40688306..40688636 (+ strand)
Length: 331
Type: CDS
Position: Chr01:40688755..40689012 (+ strand)
Length: 258
Type: CDS
Position: Chr01:40689013..40689298 (+ strand)
Length: 286
Type: three_prime_UTR

>Vigan.01G286100.01 class=Sequence position=Chr01:40687636..40689298 (+ strand)
ACCAATTATA AACTCTGCAC TCTGCAAAGA ACTGAATCAT CAGAGCTAAC AACAATGGGA GAGGTAGACC CTGCTTTCAT
CCAAGACCCA CAACACAGAC CAAAGTTGAA TACTATCCAA GCTGAAGACA TTCCCGTGAT AGATCTCTCC CCAATAACCA
ACCACTCAGT TTCAGATCCA TCTTCCGTTG AAGGCTTAGT GAAGGAGATA GGAAGTGCAT GCAAGGAATG GGGTTTCTTC
CAAGTAACCA ACCATGGGGT TCCCTTCACT CTAAGACAAA ACATTGAAAA AGGTTCAAGG ATGTTCTTTG GTCAGACTCT
CCAGGAGAAG AGGAAGGTTA GCAGAAGTGA GTTTTCTCCA AGTGGTTACT ATGAGACAGA ACACACCAAA AACGTTAGGG
ACTGGAAAGA AGTGTTTGAT TTTCAAGCCA AAGACCCCAC TTTCATTCCT GTCACTTCCG ATGAACATGA TGATAGAATC
ACTCACTGGA CTAATCAATC CCCTCAGTAC CCTCCAAACT TTAGGTAATT CAACTTCACT TTCTATATAA GCTGTCAAAT
TCTGGTTCAA AAAAATTGCT TTGTTCTTGT AATTCAACTA ACTATATATA GATGGAAAAT TAGCGAAGGA CTTGTGTATA
AACGATGTGA ATATGTGTGT ACATGGATAG GGGTATAATC GAAGAGTACG TCGAAGAGAT GGAAAAGTTG TCCTTTAAGT
TGATGGAGCT CATTGCTATG AGCTTAGGCC TTGATGCAAA GAGGTTTGAA GAGTTTTTCA TGAAAGATCA AACCAGCTTT
ATTCGTCTCA ACCACTATCC TCCATGCCCT TATCCTCACC TAGCTCTTGG TGTTGGTCGA CATAAGGACG CTGGAGCATT
AACCGTTCTT GCACAGGATG AGGTTGGGGG ACTTCAAGTC AAACGCAAAG CAGATCAAGA ATGGGTTCGA GTGAAACCTA
CACCAGATGC ATACATAATC AATGTTGGTG ATATCATTCA GGTGTTGAAA TTTTACCCAA GTTAATCCTA TTGAGTATTA
TTGGATCTGC AGAATAGCAG TTTATGAAAC ATGTATAATC CCTTGATTAG AAGGTGATAG TTATAGTTTG TTGATGCAGG
TTTGGAGCAA TGACTTGTAT GAGAGTGTGG AACACAGAGT GATGGTTAAC TCTCAGAAAG AAAGGTTTTC CATTCCGTTC
TTCTTCTTCC CTGCACACTA CACCCAAGTG AAGCCTTTGG AGGAATTGAC TGATGAGAAA AACCCTCCAA AATATAGGCC
ATACAAATGG GGCAAGTTTC TTGTCCGTAG AAAGGGCAGC AATTTCAAGA AACAAAATGT CGAGAACATT CAGATTTATC
ACTATAAGAT AGCTTAAAGG ATAATAAAAT ATCAGTTTAG CTTATGCGTG GCCCTAGAAT GTTTCTGATT TGCTGCACTC
TAATCTTATT ATGAAGTTAA CAGAACCAGT GAATGTATGT ATTCTGGAAG CCTCTAATAA AAGAAAAGTA TTGTAATTGC
ATGGATCCTT TGATTTTTTT ACAGTTTCAA GTTTTATATT GTTCAGTAAG TACCGTTTTA TAGGTTCCTG TCGATGATGT
AAACTATTTG TTCATTGTAA ATAAATACAA TAATTTAGAA GTTCAAATAA ACAAGATTCC GAT

>Vigan.01G286100.01
ACCAATTATA AACTCTGCAC TCTGCAAAGA ACTGAATCAT CAGAGCTAAC AACAATGGGA GAGGTAGACC CTGCTTTCAT
CCAAGACCCA CAACACAGAC CAAAGTTGAA TACTATCCAA GCTGAAGACA TTCCCGTGAT AGATCTCTCC CCAATAACCA
ACCACTCAGT TTCAGATCCA TCTTCCGTTG AAGGCTTAGT GAAGGAGATA GGAAGTGCAT GCAAGGAATG GGGTTTCTTC
CAAGTAACCA ACCATGGGGT TCCCTTCACT CTAAGACAAA ACATTGAAAA AGGTTCAAGG ATGTTCTTTG GTCAGACTCT
CCAGGAGAAG AGGAAGGTTA GCAGAAGTGA GTTTTCTCCA AGTGGTTACT ATGAGACAGA ACACACCAAA AACGTTAGGG
ACTGGAAAGA AGTGTTTGAT TTTCAAGCCA AAGACCCCAC TTTCATTCCT GTCACTTCCG ATGAACATGA TGATAGAATC
ACTCACTGGA CTAATCAATC CCCTCAGTAC CCTCCAAACT TTAGGGGTAT AATCGAAGAG TACGTCGAAG AGATGGAAAA
GTTGTCCTTT AAGTTGATGG AGCTCATTGC TATGAGCTTA GGCCTTGATG CAAAGAGGTT TGAAGAGTTT TTCATGAAAG
ATCAAACCAG CTTTATTCGT CTCAACCACT ATCCTCCATG CCCTTATCCT CACCTAGCTC TTGGTGTTGG TCGACATAAG
GACGCTGGAG CATTAACCGT TCTTGCACAG GATGAGGTTG GGGGACTTCA AGTCAAACGC AAAGCAGATC AAGAATGGGT
TCGAGTGAAA CCTACACCAG ATGCATACAT AATCAATGTT GGTGATATCA TTCAGGTTTG GAGCAATGAC TTGTATGAGA
GTGTGGAACA CAGAGTGATG GTTAACTCTC AGAAAGAAAG GTTTTCCATT CCGTTCTTCT TCTTCCCTGC ACACTACACC
CAAGTGAAGC CTTTGGAGGA ATTGACTGAT GAGAAAAACC CTCCAAAATA TAGGCCATAC AAATGGGGCA AGTTTCTTGT
CCGTAGAAAG GGCAGCAATT TCAAGAAACA AAATGTCGAG AACATTCAGA TTTATCACTA TAAGATAGCT TAAAGGATAA
TAAAATATCA GTTTAGCTTA TGCGTGGCCC TAGAATGTTT CTGATTTGCT GCACTCTAAT CTTATTATGA AGTTAACAGA
ACCAGTGAAT GTATGTATTC TGGAAGCCTC TAATAAAAGA AAAGTATTGT AATTGCATGG ATCCTTTGAT TTTTTTACAG
TTTCAAGTTT TATATTGTTC AGTAAGTACC GTTTTATAGG TTCCTGTCGA TGATGTAAAC TATTTGTTCA TTGTAAATAA
ATACAATAAT TTAGAAGTTC AAATAAACAA GATTCCGAT

>Vigan.01G286100.01
ATGGGAGAGG TAGACCCTGC TTTCATCCAA GACCCACAAC ACAGACCAAA GTTGAATACT ATCCAAGCTG AAGACATTCC
CGTGATAGAT CTCTCCCCAA TAACCAACCA CTCAGTTTCA GATCCATCTT CCGTTGAAGG CTTAGTGAAG GAGATAGGAA
GTGCATGCAA GGAATGGGGT TTCTTCCAAG TAACCAACCA TGGGGTTCCC TTCACTCTAA GACAAAACAT TGAAAAAGGT
TCAAGGATGT TCTTTGGTCA GACTCTCCAG GAGAAGAGGA AGGTTAGCAG AAGTGAGTTT TCTCCAAGTG GTTACTATGA
GACAGAACAC ACCAAAAACG TTAGGGACTG GAAAGAAGTG TTTGATTTTC AAGCCAAAGA CCCCACTTTC ATTCCTGTCA
CTTCCGATGA ACATGATGAT AGAATCACTC ACTGGACTAA TCAATCCCCT CAGTACCCTC CAAACTTTAG GGGTATAATC
GAAGAGTACG TCGAAGAGAT GGAAAAGTTG TCCTTTAAGT TGATGGAGCT CATTGCTATG AGCTTAGGCC TTGATGCAAA
GAGGTTTGAA GAGTTTTTCA TGAAAGATCA AACCAGCTTT ATTCGTCTCA ACCACTATCC TCCATGCCCT TATCCTCACC
TAGCTCTTGG TGTTGGTCGA CATAAGGACG CTGGAGCATT AACCGTTCTT GCACAGGATG AGGTTGGGGG ACTTCAAGTC
AAACGCAAAG CAGATCAAGA ATGGGTTCGA GTGAAACCTA CACCAGATGC ATACATAATC AATGTTGGTG ATATCATTCA
GGTTTGGAGC AATGACTTGT ATGAGAGTGT GGAACACAGA GTGATGGTTA ACTCTCAGAA AGAAAGGTTT TCCATTCCGT
TCTTCTTCTT CCCTGCACAC TACACCCAAG TGAAGCCTTT GGAGGAATTG ACTGATGAGA AAAACCCTCC AAAATATAGG
CCATACAAAT GGGGCAAGTT TCTTGTCCGT AGAAAGGGCA GCAATTTCAA GAAACAAAAT GTCGAGAACA TTCAGATTTA
TCACTATAAG ATAGCTTAA

>Vigan.01G286100.01
MGEVDPAFIQ DPQHRPKLNT IQAEDIPVID LSPITNHSVS DPSSVEGLVK EIGSACKEWG FFQVTNHGVP FTLRQNIEKG
SRMFFGQTLQ EKRKVSRSEF SPSGYYETEH TKNVRDWKEV FDFQAKDPTF IPVTSDEHDD RITHWTNQSP QYPPNFRGII
EEYVEEMEKL SFKLMELIAM SLGLDAKRFE EFFMKDQTSF IRLNHYPPCP YPHLALGVGR HKDAGALTVL AQDEVGGLQV
KRKADQEWVR VKPTPDAYII NVGDIIQVWS NDLYESVEHR VMVNSQKERF SIPFFFFPAH YTQVKPLEEL TDEKNPPKYR
PYKWGKFLVR RKGSNFKKQN VENIQIYHYK IA*