GBrowse Details

Vigan.01G257000.01

Basic Information:
Name: Vigan.01G257000.01
Multiple alignment
Variant Information
Position: Chr01:36618725..36623205 (+ strand)
Length: 4481
Functional Information:
Description: Similar to Antitermination NusB domain-containing protein isoform 1. [XP_007014028.1, Theobroma cacao]
GO: Biological Process: DNA-dependent transcription, termination (GO:0006353)
Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
Molecular Function: RNA binding (GO:0003723)
InterPro: NusB/RsmB/TIM44 (IPR006027)
NusB antitermination factor (IPR011605)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:19.75,15.55,9.46,47.67,11.63,20.83,8.21,9.11
Arabidopsis thaliana homolog: AT4G26370.1
Automatic updates:
Name: NM_001255417 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max NUS1-like protein (LOC100809333), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:36618725..36618755 (+ strand)
Length: 31
Type: five_prime_UTR
Position: Chr01:36618756..36619048 (+ strand)
Length: 293
Type: CDS
Position: Chr01:36619157..36619233 (+ strand)
Length: 77
Type: CDS
Position: Chr01:36619884..36620018 (+ strand)
Length: 135
Type: CDS
Position: Chr01:36620933..36620987 (+ strand)
Length: 55
Type: CDS
Position: Chr01:36621154..36621241 (+ strand)
Length: 88
Type: CDS
Position: Chr01:36622667..36622765 (+ strand)
Length: 99
Type: CDS
Position: Chr01:36622879..36622992 (+ strand)
Length: 114
Type: CDS
Position: Chr01:36622993..36623205 (+ strand)
Length: 213
Type: three_prime_UTR

>Vigan.01G257000.01 class=Sequence position=Chr01:36618725..36623205 (+ strand)
ATTAAGATAT TTGCATTTAT CTTGTGTTGC AATGGAGGGA GTGTTGCTTC CTGTGTGTTC TTCCCCTTCA TCCTCTGCAA
CTCTTAAACC CAAAATCTCC ATTCCCCAAC GCTCTTCTTT TACTTCGTCA CTACCAACCC ACTGTTCCTT CCCTCAAAAC
GTAGCGTTTT CCCTTCGTAA CACTCTCCGA AGTTCCACCT CCGCACTCGC CCAGCACGAA GCTCCGGTTC TGGGAAAACC
CGACAACAAC TCCGTACCTG CTCTGCCCAA AATCGACAAG ACTGGGCGCT TCTGCAGCCC CAGAGCCGCG AGAGAACTCG
CACTGTAAAA CCTGAACCGA ATCCCTTCCT TACTTCCTTC CATTCAACTT ACTAATTTGT CAGTTACCTT TTCTCTGTAC
ACTTTGTTTT CTGATGAGAA TCTTTCGTGC AGCTCCATTA TTTATGCCGC ATGTTTGGAG GGAATGGACC CTGTTCGGCT
TTTCGAGAAA CGGATGAATG CGCGGCGAGG TAACGGTTTA TCTTTGATGA TAGGGTCTGC TGGGATAATA AACTTATCAA
TGAACACTTT TATGATATGA CGATAAGAAA CAAAATTGAG ACAAGAGGGT GTTAAATTGG ATCTGTGTTT ACTGTTTATT
ATTTTTTAAT CATAAAGTTG CAATTTTATT TGAAATCTAT TTGATGTTTT CAGAAATTTG TATAGAAAGC ACTCAACATT
CTTTTTTGTT TTCTTTTCCG TAGAAATCTT CGAAAAAGCA TATTTTTTAT TACTGTGATA ATGTCTGTGT GAATCTGGCT
TATAGCCTTT AGTGGAAAAC AAGGTATCAA TTTTATAACT AAAAAGTGAA ATAAGTAAAT GGAAACACAA ATAAAGGTAC
ATTATACTCA TGTTTCTCCA TGTATGAGTT AAAAAACAAA ATTTGGTGAA GTTAACGTGA GAAGTAGTTT ATAAATAAAC
TAATTTTAAC TTCTGGTTAT AAATAAGTTA ATTAATTAAC TAATTTTAAC TTCTGAAGAA ATTTATTATA TTCTTTTGTT
TTCCTTTTTT CTGGAAGTGC TTAATAGAAA TGTTTATCCA AACATGTTCT ATAACGTGGT TAGTTAAGGT TTTTGTTGTC
GTTTGTTTTG AATTGGGTGC ATTTGGTTTG TTGTTTCAGA GGCCGGATAT GAATTTGACA AGAAAAAGTT GTTGGAGTAT
AATCATATGA GTTTTGGAGG GCCACCTGCT ACTGTTGAGT CGGATGAAGA GGCAAATGAG CTTCTGCGGC ACATTGAAGA
AGAGTCTGCC ATTGGTAATA AAAAACCATA GATCGAGAAT CTCTCTTTTC CTTTGGTGAA AATGCTTGAA TAGAATGTTC
AATGTATATA TATCCCTGCT TTTCTTTTAC TTGACATTTG CAAGTTACAA CATTTAAAAA ATAAAAAATG AAACCAACCA
GATTTGCTAC TGCTTCATGA TGTTGTTGTA TGTACATGTC TTTCATAGTT TATAACGTAC GAGCTTTGAA AGCCGAGTAG
TCTCTTTTCA CATTTTTTAT TTGTTGTCTC CTCTGCACAC CCGTGTGACT TGCAAATATG ATTGGTCAAT TTAATTTGCT
GGTAAAAAAT TGCAGTTTTA ACAGTTGTTG GAGATGAAAG TCAACCATTT ATTTATTTTG TGTTTCTCTT GCTGCCATGA
TTGAAAGTAA GCTTATCTAG AAAACCTTAT TGACTTTTCA TGATATTTTA AGCTGAGGAG TTGTAGCATT TGCGTATCAG
TGAAACTTAG GAATACTCCA TTGAACATTT TAGTTTAGTA GTGATTAGGC TGGAAATGTA TAAGTTTTAC TTTGGTTGTC
ACTGCAGCAA GGTTTTGCAT CCTGGTATTG TAAGTTAGCT TTGAAGGGCT ACTTCTTTAT TCTAACAGTG TGTTAGACAA
GAGTTTATGT TGTGGTTATA TTGTAAAGCA ATTTTACAAG TCACATTATG GACAGAAGTC TATGTTCTGG TATTATATCT
TAAGGATTTA AATTTGGTAC ACAGCCTTCC TTATTGTGTT ATATTCTTTC GTATGACAGA AGTCTGTGTG TTTCAGTGAC
AACACAATGT GGCACATATG CCCAGAGAAA TGTATAATGG GCTGTAAAGT ATTTATTATT ATCTGTGCAG TTTTCTGTTG
TTGCTTTCAT CTCTAAATTG TACTAATGTG TTATGTTGTG CATGGCAGAG GCAGAAGTCC TTACAGCTCC ACCAAGGTTG
GTATATAACA ACCTGATTTT GAGGTAAACG TAGACCCTTT ACAGCTCCTC CAAAGCATAC TTTAAATATA AGCTTGTCCT
TTCGTCCCCT CACCCACCGA CCCCCCAAAC ACGCACTGTA AAACTGGGTC TTTTATTTGC GTTAAGGTTT GTTGGCAATG
GTAATAATGT TACAACTCCC TATCTGCAGA TTCACTAGGA AACTATTGGT TGCAGTCAGG GATACATGGG ACAATCATGT
CCTGGTTATT AACAAGATCG TCCCTGAAAA TTGGAAGGTA TAATAGTTGA TATATATTGT AGCTTTTTTA CTCAATTTAT
TATCTTGCCG CTGCAAATTC ATTGATCATG GGCATAATTT CTTCTTATTA TTGGATGACT TCTATGTTAC TAATGCGCCA
ATCCTGATCA ATTATTTGTT ACACGAAGTT GAACCACCCT GAAAAAAGTG GGAAATAGAT AAGGTCAATG GTGAAACAGT
GCAATAGTTT ACAATTTTGA ATTTTATATA AAGACAGAAT GAGAAGAAAA AAAATGTCAT GCAAAAATGG TTGGTTATCT
TGCCCTAGTT ATATTTGTCA TCCATAGGAA CAATGCAATA ATTTACAATT TCAAATTAAA AGGCAGAACG ACAAGAAAAA
AGTCTCCTGC AAAATGGTCA TAGCTAAGCT TATTAATTCA GAGAGGCATG GGTTGAGTCA TGCTCTGTTT CATATATCTC
TCCTGTCACC AATTATTACA CATAATGTAT ATTCCTTTTT CTTATTCTTG TAAATATATG ATGTACATAT TATATGAATT
CAGACTGCTG AGTAAAACCA CGCAAGCAAT TCACTCGATT CTTCTCTATT ATTTTCCTGG GCTGTATCCA TTTTAATAAG
TCCTCTGTTA ATAGCTTACT CTTTTTAGAA AATTGGTTGT TGACATGATA TCAGAGTTTC CATGACCAAG TTGTCGAGAG
GTTGATACTC GTTCCCATCT TATAGATAAA ATAAGCAATT TTATAACAGG TTAGGGTATA CTAGTATGTT TGTCCACACT
TCAAGCCCAA AGAAGTGAAA AACTCCTGGG GGGAAGGGGG ATGGGTGGGG GTGGGGGGGA CATGTCAGAT ATTCTTGGGA
TTTCGTCTAA TAGCTTGATC TTTTGTTATA GTTTGATCTT GATAGGGGAA GTTACTGGTT CAACACCTGG AGTTTATTTA
TGGTAGATAA CATATTTTCC CATTCATACC CATCATTCCC TCTTCATTTA ATATACAAAA CATGAAACAC CTACTATTGA
AAGGCAAGTA TGCTTATTTG TCTTGGACCC TAGACTATCA TCATTTTAAT TTGATCACCT AGTTTATTTG CTCATAACTG
CAAAATGCTT CTCACTGGTA CAACATATTT GTTGTGCAAA ATTTATACTA CTGTTATAAA GTTTCTTCTG CCTAAGATAT
CTGTCTGCCA CTATCATGTT TAATGTTAGT ATAGATGACT TCGTATTTTT ATTGGTTTGA TAATGTTTTA ATGAATTGTA
TGTACTGTAT CTACTTCTTA AAGTCATGCA TTGATCCAAC TTAGCTTCTG TCAATTTGTA TTTATGGTAT GCTTTTACTT
ATTTCAGTTT TATTCCTTGC ACGCAATTAT GCTAAATTTT AAAGATCCAT TTTGTTTGCT AATGCTCATG GTAGTTTGCA
TCTTTCTGTT GATGCATTTC AGAATGAACC AGCAGGAAAA ATTTTAGAGC TTTGTATTCT TCACTTGGCC ATGTCCGAAA
TGGCAGTGCT AGAAACAAGA CACCAAATCG TCATTAATGA GGTATATCTT AAGTTCACGT GATGAGAAAC CAAACATTAC
TTAAGCTTAT ATCGTGTCCT ATTATTTTGC ACATAAAAAA AGTTTAACTC ATAATTTATA TAATTGTTTT GAAGGCTGTA
GATCTTGCTA AACGGTTTTG TGATGGAGCA GCCCCTCGTA TCATTAATGG CTGTCTCCGC ACATTTTTCC GAGAACTTGA
GCTTCAGGAA TCAAATAACC GAGTTTAGTT GTCTTTGGCT TATGGAAAAG GTTTCCTTGC ATTTCAGGAA TATCAGGTTT
CGTAGCTTGC ATATAGAACG CTACTCAATG ACTGAAATAG GAACCTTGTT TGAAAATTAC TGTTATTATG ACATTGAAAT
AGTTATAGTG TATATGCTAT TTTGTGTATT TTAGCACGTG GGATTTGTAT TAAATTTTTG ACTAAAATGT TAATTTCGTT
C

>Vigan.01G257000.01
ATTAAGATAT TTGCATTTAT CTTGTGTTGC AATGGAGGGA GTGTTGCTTC CTGTGTGTTC TTCCCCTTCA TCCTCTGCAA
CTCTTAAACC CAAAATCTCC ATTCCCCAAC GCTCTTCTTT TACTTCGTCA CTACCAACCC ACTGTTCCTT CCCTCAAAAC
GTAGCGTTTT CCCTTCGTAA CACTCTCCGA AGTTCCACCT CCGCACTCGC CCAGCACGAA GCTCCGGTTC TGGGAAAACC
CGACAACAAC TCCGTACCTG CTCTGCCCAA AATCGACAAG ACTGGGCGCT TCTGCAGCCC CAGAGCCGCG AGAGAACTCG
CACTCTCCAT TATTTATGCC GCATGTTTGG AGGGAATGGA CCCTGTTCGG CTTTTCGAGA AACGGATGAA TGCGCGGCGA
GAGGCCGGAT ATGAATTTGA CAAGAAAAAG TTGTTGGAGT ATAATCATAT GAGTTTTGGA GGGCCACCTG CTACTGTTGA
GTCGGATGAA GAGGCAAATG AGCTTCTGCG GCACATTGAA GAAGAGTCTG CCATTGAGGC AGAAGTCCTT ACAGCTCCAC
CAAGGTTGGT ATATAACAAC CTGATTTTGA GATTCACTAG GAAACTATTG GTTGCAGTCA GGGATACATG GGACAATCAT
GTCCTGGTTA TTAACAAGAT CGTCCCTGAA AATTGGAAGA ATGAACCAGC AGGAAAAATT TTAGAGCTTT GTATTCTTCA
CTTGGCCATG TCCGAAATGG CAGTGCTAGA AACAAGACAC CAAATCGTCA TTAATGAGGC TGTAGATCTT GCTAAACGGT
TTTGTGATGG AGCAGCCCCT CGTATCATTA ATGGCTGTCT CCGCACATTT TTCCGAGAAC TTGAGCTTCA GGAATCAAAT
AACCGAGTTT AGTTGTCTTT GGCTTATGGA AAAGGTTTCC TTGCATTTCA GGAATATCAG GTTTCGTAGC TTGCATATAG
AACGCTACTC AATGACTGAA ATAGGAACCT TGTTTGAAAA TTACTGTTAT TATGACATTG AAATAGTTAT AGTGTATATG
CTATTTTGTG TATTTTAGCA CGTGGGATTT GTATTAAATT TTTGACTAAA ATGTTAATTT CGTTC

>Vigan.01G257000.01
ATGGAGGGAG TGTTGCTTCC TGTGTGTTCT TCCCCTTCAT CCTCTGCAAC TCTTAAACCC AAAATCTCCA TTCCCCAACG
CTCTTCTTTT ACTTCGTCAC TACCAACCCA CTGTTCCTTC CCTCAAAACG TAGCGTTTTC CCTTCGTAAC ACTCTCCGAA
GTTCCACCTC CGCACTCGCC CAGCACGAAG CTCCGGTTCT GGGAAAACCC GACAACAACT CCGTACCTGC TCTGCCCAAA
ATCGACAAGA CTGGGCGCTT CTGCAGCCCC AGAGCCGCGA GAGAACTCGC ACTCTCCATT ATTTATGCCG CATGTTTGGA
GGGAATGGAC CCTGTTCGGC TTTTCGAGAA ACGGATGAAT GCGCGGCGAG AGGCCGGATA TGAATTTGAC AAGAAAAAGT
TGTTGGAGTA TAATCATATG AGTTTTGGAG GGCCACCTGC TACTGTTGAG TCGGATGAAG AGGCAAATGA GCTTCTGCGG
CACATTGAAG AAGAGTCTGC CATTGAGGCA GAAGTCCTTA CAGCTCCACC AAGGTTGGTA TATAACAACC TGATTTTGAG
ATTCACTAGG AAACTATTGG TTGCAGTCAG GGATACATGG GACAATCATG TCCTGGTTAT TAACAAGATC GTCCCTGAAA
ATTGGAAGAA TGAACCAGCA GGAAAAATTT TAGAGCTTTG TATTCTTCAC TTGGCCATGT CCGAAATGGC AGTGCTAGAA
ACAAGACACC AAATCGTCAT TAATGAGGCT GTAGATCTTG CTAAACGGTT TTGTGATGGA GCAGCCCCTC GTATCATTAA
TGGCTGTCTC CGCACATTTT TCCGAGAACT TGAGCTTCAG GAATCAAATA ACCGAGTTTA G

>Vigan.01G257000.01
MEGVLLPVCS SPSSSATLKP KISIPQRSSF TSSLPTHCSF PQNVAFSLRN TLRSSTSALA QHEAPVLGKP DNNSVPALPK
IDKTGRFCSP RAARELALSI IYAACLEGMD PVRLFEKRMN ARREAGYEFD KKKLLEYNHM SFGGPPATVE SDEEANELLR
HIEEESAIEA EVLTAPPRLV YNNLILRFTR KLLVAVRDTW DNHVLVINKI VPENWKNEPA GKILELCILH LAMSEMAVLE
TRHQIVINEA VDLAKRFCDG AAPRIINGCL RTFFRELELQ ESNNRV*