Variant information

Chr01:36618725 - 36623205

Filter



 [SNPs] [Indels]

SNPs

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
36620917AG67432.770.22DOWNSTREAM(|3243||None|Vigan.01G257200.01), INTRON(|||None|Vigan.01G257000.01), UPSTREAM(|2772||None|Vigan.01G257100.01)Vigna nepalensis
36620923TG74423.770.20DOWNSTREAM(|3237||None|Vigan.01G257200.01), INTRON(|||None|Vigan.01G257000.01), UPSTREAM(|2766||None|Vigan.01G257100.01)Vigna nepalensis
36620929GA75456.770.21DOWNSTREAM(|3231||None|Vigan.01G257200.01), INTRON(|||None|Vigan.01G257000.01), SPLICE_SITE_REGION(|||None|Vigan.01G257000.01), UPSTREAM(|2760||None|Vigan.01G257100.01)Vigna nepalensis
36620950GA80579.770.24DOWNSTREAM(|3210||None|Vigan.01G257200.01), NON_SYNONYMOUS_CODING(MISSENSE|Gct/Act|A175T|None|Vigan.01G257000.01), UPSTREAM(|2739||None|Vigan.01G257100.01)Vigna nepalensis
36620964GA77543.770.23DOWNSTREAM(|3196||None|Vigan.01G257200.01), SYNONYMOUS_CODING(SILENT|ttG/ttA|L179|None|Vigan.01G257000.01), UPSTREAM(|2725||None|Vigan.01G257100.01)Vigna nepalensis
36620994GA90683.770.26DOWNSTREAM(|3166||None|Vigan.01G257200.01), INTRON(|||None|Vigan.01G257000.01), SPLICE_SITE_REGION(|||None|Vigan.01G257000.01), UPSTREAM(|2695||None|Vigan.01G257100.01)Vigna nepalensis
36620999CT85631.770.22DOWNSTREAM(|3161||None|Vigan.01G257200.01), INTRON(|||None|Vigan.01G257000.01), UPSTREAM(|2690||None|Vigan.01G257100.01)Vigna nepalensis
36621007AC84771.770.26DOWNSTREAM(|3153||None|Vigan.01G257200.01), INTRON(|||None|Vigan.01G257000.01), UPSTREAM(|2682||None|Vigan.01G257100.01)Vigna nepalensis
36621011CT90837.770.29DOWNSTREAM(|3149||None|Vigan.01G257200.01), INTRON(|||None|Vigan.01G257000.01), UPSTREAM(|2678||None|Vigan.01G257100.01)Vigna nepalensis
36621043CG901263.770.38DOWNSTREAM(|3117||None|Vigan.01G257200.01), INTRON(|||None|Vigan.01G257000.01), UPSTREAM(|2646||None|Vigan.01G257100.01)Vigna nepalensis
36621054TC981551.770.41DOWNSTREAM(|3106||None|Vigan.01G257200.01), INTRON(|||None|Vigan.01G257000.01), UPSTREAM(|2635||None|Vigan.01G257100.01)Vigna nepalensis
36621083TC961821.770.47DOWNSTREAM(|3077||None|Vigan.01G257200.01), INTRON(|||None|Vigan.01G257000.01), UPSTREAM(|2606||None|Vigan.01G257100.01)Vigna nepalensis
36621088CT971833.770.49DOWNSTREAM(|3072||None|Vigan.01G257200.01), INTRON(|||None|Vigan.01G257000.01), UPSTREAM(|2601||None|Vigan.01G257100.01)Vigna nepalensis
36621091GA961836.770.50DOWNSTREAM(|3069||None|Vigan.01G257200.01), INTRON(|||None|Vigan.01G257000.01), UPSTREAM(|2598||None|Vigan.01G257100.01)Vigna nepalensis
36621100TG951842.770.49DOWNSTREAM(|3060||None|Vigan.01G257200.01), INTRON(|||None|Vigan.01G257000.01), UPSTREAM(|2589||None|Vigan.01G257100.01)Vigna nepalensis
36621101TG961861.770.50DOWNSTREAM(|3059||None|Vigan.01G257200.01), INTRON(|||None|Vigan.01G257000.01), UPSTREAM(|2588||None|Vigan.01G257100.01)Vigna nepalensis
36621118GA911626.770.47DOWNSTREAM(|3042||None|Vigan.01G257200.01), INTRON(|||None|Vigan.01G257000.01), UPSTREAM(|2571||None|Vigan.01G257100.01)Vigna nepalensis
36621190AG951473.770.41DOWNSTREAM(|2970||None|Vigan.01G257200.01), SYNONYMOUS_CODING(SILENT|acA/acG|T199|None|Vigan.01G257000.01), UPSTREAM(|2499||None|Vigan.01G257100.01)Vigna nepalensis
36621192GA971518.770.40DOWNSTREAM(|2968||None|Vigan.01G257200.01), STOP_GAINED(NONSENSE|tGg/tAg|W200*|None|Vigan.01G257000.01), UPSTREAM(|2497||None|Vigan.01G257100.01)Vigna nepalensis
36621208GA981380.770.38DOWNSTREAM(|2952||None|Vigan.01G257200.01), SYNONYMOUS_CODING(SILENT|ctG/ctA|L205|None|Vigan.01G257000.01), UPSTREAM(|2481||None|Vigan.01G257100.01)Vigna nepalensis
36621213TC991333.770.37DOWNSTREAM(|2947||None|Vigan.01G257200.01), NON_SYNONYMOUS_CODING(MISSENSE|aTt/aCt|I207T|None|Vigan.01G257000.01), UPSTREAM(|2476||None|Vigan.01G257100.01)Vigna nepalensis
36621312AG60141.770.13DOWNSTREAM(|2848||None|Vigan.01G257200.01), INTRON(|||None|Vigan.01G257000.01), UPSTREAM(|2377||None|Vigan.01G257100.01)Vigna nepalensis
36623148GT552148.771.00DOWNSTREAM(|1012||None|Vigan.01G257200.01), UPSTREAM(|541||None|Vigan.01G257100.01), UTR_3_PRIME(|156||None|Vigan.01G257000.01)Vigna nepalensis

Indels

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
36621077GCG981677.730.45DOWNSTREAM(|3082||None|Vigan.01G257200.01), INTRON(|||None|Vigan.01G257000.01), UPSTREAM(|2611||None|Vigan.01G257100.01)Vigna nepalensis
36621161AGGAAACTATTGGTTGCAGTCAGA931319.730.38DOWNSTREAM(|2998||None|Vigan.01G257200.01), FRAME_SHIFT(|aggaaactattggttgcagtcagg/|RKLLVAVR190|None|Vigan.01G257000.01), UPSTREAM(|2527||None|Vigan.01G257100.01)Vigna nepalensis