GBrowse Details

Vigan.01G214300.01

Basic Information:
Name: Vigan.01G214300.01
Multiple alignment
Variant Information
Position: Chr01:28022426..28026626 (- strand)
Length: 4201
Functional Information:
Description: Similar to isoflavone 4'-O-methyltransferase. [XP_003542715.1, Glycine max]
GO: Molecular Function: methyltransferase activity (GO:0008168)
Molecular Function: O-methyltransferase activity (GO:0008171)
Molecular Function: protein dimerization activity (GO:0046983)
InterPro: O-methyltransferase, family 2 (IPR001077)
Winged helix-turn-helix DNA-binding domain (IPR011991)
Plant methyltransferase dimerisation (IPR012967)
Caffeate O-methyltransferase (COMT) family (IPR016461)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.00,0.00,0.02,0.05,0.00,0.11,0.52,0.30
Automatic updates:
Name: NM_001366914 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max isoflavone 4'-O-methyltransferase (IOMT1), mRNA.
PubMed ID: 24962214 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr01:28022426..28022490 (- strand)
Length: 65
Type: three_prime_UTR
Position: Chr01:28022491..28022793 (- strand)
Length: 303
Type: CDS
Position: Chr01:28025579..28026370 (- strand)
Length: 792
Type: CDS
Position: Chr01:28026371..28026626 (- strand)
Length: 256
Type: five_prime_UTR

>Vigan.01G214300.01 class=Sequence position=Chr01:28022426..28026626 (- strand)
TCATTATCAT ACATTCACAC CTAACCCAAA TCCACCAACC TTTGTAAACT GACGAAACTT ATATGGCCGA CCATGACCAC
AAGATTCCCA CCACTGCCAC GAATTAATTC CACATCACAA AGGACACGAC CATTAGAAAA TCTTAGCGTT TGTTTTGTAG
CTGGATTTAA ACATATATAA GATGAACTAC TACTACGTAT ACATCGAAAA GCATAAACCG AACAAGTAGT AAAGTACGTT
CAAAACAAAA ACAAAAATGG GTTTCTGTAG CAATGGCAGA GAAGAGAGTG AAATATATCA CGCTCAAATC CACCTGTACA
AACACGTGTA CAACTTCGTG AGCTCTATGG CTCTCAAGTG TGCCATGGAA CTAGGAATAG CGGACGCAAT CCACGGCCAC
GGAGAACCCA TGAGCATTTC TGAGTTAGCC TCTGCACTGA AACTGCACCC TTCAAAACTC TCTGTCCTCC ACCGATTCAT
GCGCCTTCTA ACACATAATG GGTTCTTCGC CAAAACAACA GTGGCGTCAC ATGAAGGAGC AGGAGGAGAA GAAACAGTGT
ATGATCTCAC CCCTCCTTCC AAGCTTCTGA TCCGAAGCAA GTCAACGTGT TTGGCTCCTA TTGTTAAGGG CGCGCTTCAT
TCGAGTTCCA TCGATATGTG GCACTCCTCC AACAAGTGGT TCACTGAGGA TAAGGAACTC TCACTGTATG AGAGTGCCAA
CGGTGAGAGT TTCTGGGAGT TTTTGAACAA AACCACTGAA TCTGATACGC TTAACATGTT TCATGAAGCC ATGGCAGCAG
ATTCTAGAAT GTTCAAGATG GCTCTGGAAG AGTGCAAGCA TGTGTTTGAG GGATTGGGTT CCCTTGTCGA TGTGGGAGGT
GGAACTGGTG CTGTCACGAG TCTCATCAAT GAACTCTTCC CTCACATGAA GTGCACGGTG TTTGATCAAC CACAGGTTGT
GTCCAACTTG ACTGGATCTG AAAATTTGAA CTTTGTTGGT GGGGATATGT TCAAATCCAT CCCTTCAGCT GATGCTGTTT
TACTCAAGGT ATAATAACTT TTCCCATTCT AAATTATATT CCTTTTGCTT TACACAGTTT TTAGCTATAG CCGTTGAAAC
GGTTATCCGA TTATCAGGCT CCATCCGGTC TCTTTCGGTT GGTCATTTAT TGAACTAATC CAATCCAGAT AATTTATTGA
GTCAATTCAA CCCAGTCTAT TTATTAACGA AAAATTCAAA CTCGATCTGA CCCACTATGG GTTGGTGGAT TAAACGGTTT
GGTTCACTGA CTCATTTAAT TATAAATTTT TTTAAAATAA AAATGATATA TTTTTTAATT TAAATCTAAA TAAATTTCAT
ATTAAAATGA AGTTAAACTC CAAAAATAAT TCAAAATAAA TAAATAAAAA GTATCATACA ACCCAAGCAT AATCCAAAAA
TATGTAAATC ACTTGTCCAT TTATAATATT AGAATCTTGA ATAGATAAAT CTATAATTTT TTTTAAACCT CTTCTTCTTT
ATCACCATCT ACAATATAAT AAAAAAAATA CTAATTAATA ATATTAAAAT ACAAAATAAT AAATAATTAA ATTAAATTAA
GTGGGGTTGA TGAGCTAACT TAGTCTACCA CGGGTTCAAC CCGGTGAATC GATCCTAAGT GAGCCGGATT GAAAATTAAT
CCGTATAAAA AAATTACATT TTTTCCCAAA CTCAATACGG TTCAAACCCG TGATGGGTTA GGTTGGTTCG TGATGGGTTA
GGTTGGTTCA GGATTAAAAT CCATTCTCAC ATCACTAATC TTTATCATTT GAAAATTTAA TCTGACTTTA AGTCAACTTA
GGTTTGAAAT GATCTTCCTA GCTAGTATCT TGCATTTTAG CAGCAGTTAT TAAAATACAG TTACTGCGTT TAAACCGCAG
TAATATAAAA GTTAAAAATC AACATTAAAT TCATAAGAAT CTTTGCAAAC ATTTATTACT TTCGTTATTT CTGAGATAAC
TTTTAAATAT ATACATAATT TTAATAGGAA TAAATATTAG AAAGTATACT AAAATGTTAA TATAATCTTG AAGTAATAAT
AGTAATATTA ATTATATTTC TTTTAAGTTA TATATGCAAC ATGAAAAAAT GAACATTGAA TTACATATCT TTTTGTGGCA
TAAATTAAAT GTAAACAAAT AAATAAAATT TTAAATCGAC ATAAAATTGT TATATTACAT GTTTTTTAAG ATAATTAATA
AAATTAATAA TTAACAATAA TAACAATCAT ATTCCATATA TATTCATATG AAGATATTTT ATTAGTCAAA TTATAAATTT
ATATGTTGGC ACAAAATGTT ATATAATTAA ATTTTCTAAT ATAGTTATGA TTTATAGAAG TAAATCTTTT TTAAAATAAT
ATTTATATAA AAAATGTATG AATATTTTTT TAATATAAAT TATATTAATT TATATTCATT TAAAGATATT CTCGGGTTAA
AATATAGCTA GTGAAAAAAG ATTAAAAGAA ATATCAATTG CGGTATGAAA ATAATTTATT ATCAAATTTA AGTGATTTTA
TTTTGTAGTT TTCATAAGTT GTTATTTAAA TAATTCGTTA GTATACTCAT TATTTGACAT AATTGTTTAA TGAAAAACAG
TTTATTGATT AATAACTATT TTTGAAGTAT ATAAATTAGT AAATAATACA ATATTCTTAC ATGTTAACAA CCATTTCATC
TATAATATTA TATCAATATA TATATATATA TATATATATA TATATATATA TATATATATA TATATATATA TATATATATA
TATATATATA TATATATATA TATATGTATA AAGGATTCCT TGTCCACATT TAATTATAGT GTTTAAATAT ATTTTTTCTT
TTAATTTAAA CACTTTCTAT TTCATTATTT TTTTAAAAAA AATTAACCAT TTTTAAGTTA ATAAATAAAA ACTGTCTATA
ATAAAATTAC GAAAGTTATT TATATTTATT TTTATAATTA TAATTTTATT ATGTTTTATT ATTATAAAGA ATATGAATAT
AAATGCGTTA AACACATAAG TTTATTTAGT TATTTTAATA TATTTATTTT CGGTCATAAA AAATGGAACA ATGGTTTTTT
TTCTTTTAAG AAAGGTTTTG AGATTTTGTG TATAGAAAAA AAAAACTAAA AGAACTAACA TTACCATTTT ATGAACTTTT
CTAATTTAAA CATGAAGTTT AATCACACGA TTCAACTTAA AAAAATAAGA CAACTATTTA TAATCTCTAC ATAAAAATAT
ATCATTCTAG TTCACACACA TTACTTTTAA TCCCTGTGAT AAAAAAATAG AAGGAAGTAA CATTATAGCT TAAGAGTCTA
AGAACAGTTA AAATTAAAAG TGGATAGTAT AAAGACTAAA ATGATGTTCT TTTATAACCG TAAAAATACA AGATTAATGA
AACATGTACA CAAATTTTAA AATCTGAGGT TGCATTTAGT AAAATATACT ATAATGATTT CTGTAAGTCT GTCGCGAGTG
TTAAAGTCAT TCATCACGTT TTTGTTGTTT GTTTTGAATT TAAAGTTTTT GCTACAATTT TAAGTGACTT AGAGAATATA
AAAACAACTA TATATTTAAA TTCTTCTAAA TAGAGACTTT TAAGCGATAT ATATATATAT ATATATATAT ATATATATAT
ATATATATAT ATATATATAT ACACACACAT ATATATATAT ATATATATAT ATATATATAT ATATATATAT TTGTTATTTT
TTACAAAAGC GATGAAATTG ATAGCATGAC TGTATAATTT GAATTGTTAG ATAAATTTTC AATTGTTTTG CAGTGGGTTC
TGCATGATTG GAACGACGAG CTCGCAGTGA AGATATTGAA GAACTGCAAA GACGCTATTT CAGGGAAAGG GAAAGAAGGA
AAAGTGATAA TCGTAGACAT AGCAATTGAT GAAGCAAGTG ATGATAGTGA ATTGACAGAG TTGAAGCTGA ACTATGACTT
GGTGATGCTC ACTATGTTGA ATGGAAAAGA AAGAGATAGA AATGAATGGG AAAAACTTAT TTACGATGCA GGCTTCAGCG
GCTACGACAT CACCCCTATA TGTGGCTTCA AATCTCTCAT CCAACTTTAT CCTTAATAAC ATATTTCAAG CTGTTGCAAA
CAATGAGTCA TATGATTCCA AAGTGTTGCA CCATATATAT G

>Vigan.01G214300.01
TCATTATCAT ACATTCACAC CTAACCCAAA TCCACCAACC TTTGTAAACT GACGAAACTT ATATGGCCGA CCATGACCAC
AAGATTCCCA CCACTGCCAC GAATTAATTC CACATCACAA AGGACACGAC CATTAGAAAA TCTTAGCGTT TGTTTTGTAG
CTGGATTTAA ACATATATAA GATGAACTAC TACTACGTAT ACATCGAAAA GCATAAACCG AACAAGTAGT AAAGTACGTT
CAAAACAAAA ACAAAAATGG GTTTCTGTAG CAATGGCAGA GAAGAGAGTG AAATATATCA CGCTCAAATC CACCTGTACA
AACACGTGTA CAACTTCGTG AGCTCTATGG CTCTCAAGTG TGCCATGGAA CTAGGAATAG CGGACGCAAT CCACGGCCAC
GGAGAACCCA TGAGCATTTC TGAGTTAGCC TCTGCACTGA AACTGCACCC TTCAAAACTC TCTGTCCTCC ACCGATTCAT
GCGCCTTCTA ACACATAATG GGTTCTTCGC CAAAACAACA GTGGCGTCAC ATGAAGGAGC AGGAGGAGAA GAAACAGTGT
ATGATCTCAC CCCTCCTTCC AAGCTTCTGA TCCGAAGCAA GTCAACGTGT TTGGCTCCTA TTGTTAAGGG CGCGCTTCAT
TCGAGTTCCA TCGATATGTG GCACTCCTCC AACAAGTGGT TCACTGAGGA TAAGGAACTC TCACTGTATG AGAGTGCCAA
CGGTGAGAGT TTCTGGGAGT TTTTGAACAA AACCACTGAA TCTGATACGC TTAACATGTT TCATGAAGCC ATGGCAGCAG
ATTCTAGAAT GTTCAAGATG GCTCTGGAAG AGTGCAAGCA TGTGTTTGAG GGATTGGGTT CCCTTGTCGA TGTGGGAGGT
GGAACTGGTG CTGTCACGAG TCTCATCAAT GAACTCTTCC CTCACATGAA GTGCACGGTG TTTGATCAAC CACAGGTTGT
GTCCAACTTG ACTGGATCTG AAAATTTGAA CTTTGTTGGT GGGGATATGT TCAAATCCAT CCCTTCAGCT GATGCTGTTT
TACTCAAGTG GGTTCTGCAT GATTGGAACG ACGAGCTCGC AGTGAAGATA TTGAAGAACT GCAAAGACGC TATTTCAGGG
AAAGGGAAAG AAGGAAAAGT GATAATCGTA GACATAGCAA TTGATGAAGC AAGTGATGAT AGTGAATTGA CAGAGTTGAA
GCTGAACTAT GACTTGGTGA TGCTCACTAT GTTGAATGGA AAAGAAAGAG ATAGAAATGA ATGGGAAAAA CTTATTTACG
ATGCAGGCTT CAGCGGCTAC GACATCACCC CTATATGTGG CTTCAAATCT CTCATCCAAC TTTATCCTTA ATAACATATT
TCAAGCTGTT GCAAACAATG AGTCATATGA TTCCAAAGTG TTGCACCATA TATATG

>Vigan.01G214300.01
ATGGGTTTCT GTAGCAATGG CAGAGAAGAG AGTGAAATAT ATCACGCTCA AATCCACCTG TACAAACACG TGTACAACTT
CGTGAGCTCT ATGGCTCTCA AGTGTGCCAT GGAACTAGGA ATAGCGGACG CAATCCACGG CCACGGAGAA CCCATGAGCA
TTTCTGAGTT AGCCTCTGCA CTGAAACTGC ACCCTTCAAA ACTCTCTGTC CTCCACCGAT TCATGCGCCT TCTAACACAT
AATGGGTTCT TCGCCAAAAC AACAGTGGCG TCACATGAAG GAGCAGGAGG AGAAGAAACA GTGTATGATC TCACCCCTCC
TTCCAAGCTT CTGATCCGAA GCAAGTCAAC GTGTTTGGCT CCTATTGTTA AGGGCGCGCT TCATTCGAGT TCCATCGATA
TGTGGCACTC CTCCAACAAG TGGTTCACTG AGGATAAGGA ACTCTCACTG TATGAGAGTG CCAACGGTGA GAGTTTCTGG
GAGTTTTTGA ACAAAACCAC TGAATCTGAT ACGCTTAACA TGTTTCATGA AGCCATGGCA GCAGATTCTA GAATGTTCAA
GATGGCTCTG GAAGAGTGCA AGCATGTGTT TGAGGGATTG GGTTCCCTTG TCGATGTGGG AGGTGGAACT GGTGCTGTCA
CGAGTCTCAT CAATGAACTC TTCCCTCACA TGAAGTGCAC GGTGTTTGAT CAACCACAGG TTGTGTCCAA CTTGACTGGA
TCTGAAAATT TGAACTTTGT TGGTGGGGAT ATGTTCAAAT CCATCCCTTC AGCTGATGCT GTTTTACTCA AGTGGGTTCT
GCATGATTGG AACGACGAGC TCGCAGTGAA GATATTGAAG AACTGCAAAG ACGCTATTTC AGGGAAAGGG AAAGAAGGAA
AAGTGATAAT CGTAGACATA GCAATTGATG AAGCAAGTGA TGATAGTGAA TTGACAGAGT TGAAGCTGAA CTATGACTTG
GTGATGCTCA CTATGTTGAA TGGAAAAGAA AGAGATAGAA ATGAATGGGA AAAACTTATT TACGATGCAG GCTTCAGCGG
CTACGACATC ACCCCTATAT GTGGCTTCAA ATCTCTCATC CAACTTTATC CTTAA

>Vigan.01G214300.01
MGFCSNGREE SEIYHAQIHL YKHVYNFVSS MALKCAMELG IADAIHGHGE PMSISELASA LKLHPSKLSV LHRFMRLLTH
NGFFAKTTVA SHEGAGGEET VYDLTPPSKL LIRSKSTCLA PIVKGALHSS SIDMWHSSNK WFTEDKELSL YESANGESFW
EFLNKTTESD TLNMFHEAMA ADSRMFKMAL EECKHVFEGL GSLVDVGGGT GAVTSLINEL FPHMKCTVFD QPQVVSNLTG
SENLNFVGGD MFKSIPSADA VLLKWVLHDW NDELAVKILK NCKDAISGKG KEGKVIIVDI AIDEASDDSE LTELKLNYDL
VMLTMLNGKE RDRNEWEKLI YDAGFSGYDI TPICGFKSLI QLYP*