Variant information

Chr01:28022426 - 28026626

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 [SNPs] [Indels] [SSR-associated indels]

SNPs

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
28022575TC522094.771.00SYNONYMOUS_CODING(SILENT|gaA/gaG|E337|None|Vigan.01G214300.01)Vigna nepalensis
28022973AG341516.771.00INTRON(|||None|Vigan.01G214300.01)Vigna nepalensis
28023313GA743226.071.00INTRON(|||None|Vigan.01G214300.01)Vigna nepalensis
28023358TC612775.771.00INTRON(|||None|Vigan.01G214300.01)Vigna nepalensis
28023521CG501976.771.00INTRON(|||None|Vigan.01G214300.01)Vigna nepalensis
28023592CT592354.771.00INTRON(|||None|Vigan.01G214300.01)Vigna nepalensis
28024119CG572307.771.00INTRON(|||None|Vigan.01G214300.01)Vigna nepalensis
28024134CT662888.771.00INTRON(|||None|Vigan.01G214300.01)Vigna nepalensis
28024180TG522148.771.00INTRON(|||None|Vigan.01G214300.01)Vigna nepalensis
28024211CT572587.771.00INTRON(|||None|Vigan.01G214300.01)Vigna nepalensis
28024235AT542392.771.00INTRON(|||None|Vigan.01G214300.01)Vigna nepalensis
28024248TG542278.771.00INTRON(|||None|Vigan.01G214300.01)Vigna nepalensis
28024289CT552232.771.00INTRON(|||None|Vigan.01G214300.01)Vigna nepalensis
28024342GC662690.771.00INTRON(|||None|Vigan.01G214300.01)Vigna nepalensis
28024359GT672979.771.00INTRON(|||None|Vigan.01G214300.01)Vigna nepalensis
28024368TA753273.731.00INTRON(|||None|Vigan.01G214300.01)Vigna nepalensis
28024483GA692780.771.00INTRON(|||None|Vigan.01G214300.01)Vigna nepalensis
28024712GA662947.771.00INTRON(|||None|Vigan.01G214300.01)Vigna nepalensis
28024827GA462042.771.00INTRON(|||None|Vigan.01G214300.01)Vigna nepalensis
28024829TC462041.771.00INTRON(|||None|Vigan.01G214300.01)Vigna nepalensis
28024850TG391771.771.00INTRON(|||None|Vigan.01G214300.01)Vigna nepalensis
28024855CA371681.771.00INTRON(|||None|Vigan.01G214300.01)Vigna nepalensis
28024856CG351681.771.00INTRON(|||None|Vigan.01G214300.01)Vigna nepalensis
28024944CT301411.771.00INTRON(|||None|Vigan.01G214300.01)Vigna nepalensis
28024947AG301366.771.00INTRON(|||None|Vigan.01G214300.01)Vigna nepalensis
28024956CT271186.771.00INTRON(|||None|Vigan.01G214300.01)Vigna nepalensis
28024960CT261231.771.00INTRON(|||None|Vigan.01G214300.01)Vigna nepalensis
28024968CT291501.771.00INTRON(|||None|Vigan.01G214300.01)Vigna nepalensis
28024975TC341546.771.00INTRON(|||None|Vigan.01G214300.01)Vigna nepalensis
28024986GA391726.771.00INTRON(|||None|Vigan.01G214300.01)Vigna nepalensis
28024995CT411816.771.00INTRON(|||None|Vigan.01G214300.01)Vigna nepalensis
28024998GA411861.771.00INTRON(|||None|Vigan.01G214300.01)Vigna nepalensis
28025022CT502221.771.00INTRON(|||None|Vigan.01G214300.01)Vigna nepalensis
28025023CT502221.771.00INTRON(|||None|Vigan.01G214300.01)Vigna nepalensis
28025027TC482123.771.00INTRON(|||None|Vigan.01G214300.01)Vigna nepalensis
28025066TA391657.771.00INTRON(|||None|Vigan.01G214300.01)Vigna nepalensis
28025077TC331474.771.00INTRON(|||None|Vigan.01G214300.01)Vigna nepalensis
28025110GA23978.771.00INTRON(|||None|Vigan.01G214300.01)Vigna nepalensis
28025119GA18864.771.00INTRON(|||None|Vigan.01G214300.01)Vigna nepalensis
28025135AG11511.771.00INTRON(|||None|Vigan.01G214300.01)Vigna nepalensis
28025251TC5196.91.00INTRON(|||None|Vigan.01G214300.01)Vigna nepalensis
28025267AG5196.91.00INTRON(|||None|Vigan.01G214300.01)Vigna nepalensis
28025286AG7286.81.00INTRON(|||None|Vigan.01G214300.01)Vigna nepalensis
28025302CT17736.771.00INTRON(|||None|Vigan.01G214300.01)Vigna nepalensis
28025319AC19826.771.00INTRON(|||None|Vigan.01G214300.01)Vigna nepalensis
28025321TC19826.771.00INTRON(|||None|Vigan.01G214300.01)Vigna nepalensis
28025337TC19826.771.00INTRON(|||None|Vigan.01G214300.01)Vigna nepalensis
28025346CT17781.771.00INTRON(|||None|Vigan.01G214300.01)Vigna nepalensis
28025349AC17736.771.00INTRON(|||None|Vigan.01G214300.01)Vigna nepalensis
28025352GA17736.771.00INTRON(|||None|Vigan.01G214300.01)Vigna nepalensis
28025379AG7286.81.00INTRON(|||None|Vigan.01G214300.01)Vigna nepalensis
28025385AG9421.771.00INTRON(|||None|Vigan.01G214300.01)Vigna nepalensis
28025389TC10511.771.00INTRON(|||None|Vigan.01G214300.01)Vigna nepalensis
28025400TC12601.771.00INTRON(|||None|Vigan.01G214300.01)Vigna nepalensis
28025407AG17871.771.00INTRON(|||None|Vigan.01G214300.01)Vigna nepalensis
28025410GA20916.771.00INTRON(|||None|Vigan.01G214300.01)Vigna nepalensis
28025411AG21961.771.00INTRON(|||None|Vigan.01G214300.01)Vigna nepalensis
28025414GA21961.771.00INTRON(|||None|Vigan.01G214300.01)Vigna nepalensis
28025416GA20961.771.00INTRON(|||None|Vigan.01G214300.01)Vigna nepalensis
28025420AG221051.771.00INTRON(|||None|Vigan.01G214300.01)Vigna nepalensis
28025428CT251231.771.00INTRON(|||None|Vigan.01G214300.01)Vigna nepalensis
28025436TG271186.771.00INTRON(|||None|Vigan.01G214300.01)Vigna nepalensis
28025438TC261186.771.00INTRON(|||None|Vigan.01G214300.01)Vigna nepalensis
28025451AG261276.771.00INTRON(|||None|Vigan.01G214300.01)Vigna nepalensis
28025472AG361591.771.00INTRON(|||None|Vigan.01G214300.01)Vigna nepalensis
28025475GC361591.771.00INTRON(|||None|Vigan.01G214300.01)Vigna nepalensis
28025512AG381771.771.00INTRON(|||None|Vigan.01G214300.01)Vigna nepalensis
28025515GA291316.771.00INTRON(|||None|Vigan.01G214300.01)Vigna nepalensis
28025539GA271183.771.00INTRON(|||None|Vigan.01G214300.01)Vigna nepalensis
28025690CA401591.771.00SYNONYMOUS_CODING(SILENT|acG/acT|T227|None|Vigan.01G214300.01)Vigna nepalensis

Indels

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
28022919GTGTGTGTATATATATATATATATATATATATATATATATATATATATATAG321470.731.00INTRON(|||None|Vigan.01G214300.01)Vigna nepalensis
28023330GTGTGAACTAGAATGATATATTG643097.731.00INTRON(|||None|Vigan.01G214300.01)Vigna nepalensis
28023461GGT461257.731.00INTRON(|||None|Vigan.01G214300.01)Vigna nepalensis
28024140CTAC592707.731.00INTRON(|||None|Vigan.01G214300.01)Vigna nepalensis
28024212AAT582578.731.00INTRON(|||None|Vigan.01G214300.01)Vigna nepalensis
28024227AATT542450.731.00INTRON(|||None|Vigan.01G214300.01)Vigna nepalensis
28024699TTTATA632848.731.00INTRON(|||None|Vigan.01G214300.01)Vigna nepalensis
28024874TCACGAACCAACCT261222.731.00INTRON(|||None|Vigan.01G214300.01)Vigna nepalensis
28024887TAACCCAT261267.731.00INTRON(|||None|Vigan.01G214300.01)Vigna nepalensis
28024895CACGGGTTTGAACCGTATTGAGTTTGGGAAAC281222.731.00INTRON(|||None|Vigan.01G214300.01)Vigna nepalensis
28025122TTA17772.731.00INTRON(|||None|Vigan.01G214300.01)Vigna nepalensis
28025254ACTTCATTTTA5187.871.00INTRON(|||None|Vigan.01G214300.01)Vigna nepalensis
28025290TTA8412.741.00INTRON(|||None|Vigan.01G214300.01)Vigna nepalensis
28025357AAC17907.731.00INTRON(|||None|Vigan.01G214300.01)Vigna nepalensis
28025358TTCACCAACCCGTAGTAGATCGAGTGGGGTAGC15907.731.00INTRON(|||None|Vigan.01G214300.01)Vigna nepalensis
28025468AAC321537.731.00INTRON(|||None|Vigan.01G214300.01)Vigna nepalensis
28025480CGGATGC361582.731.00INTRON(|||None|Vigan.01G214300.01)Vigna nepalensis
28025489CCTGATAATC361627.731.00INTRON(|||None|Vigan.01G214300.01)Vigna nepalensis
28025530CCTT281253.731.00INTRON(|||None|Vigan.01G214300.01)Vigna nepalensis

SSR-associated indels

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
28022876(AT)21(AT)1718757.730.94INTRON(|||None|Vigan.01G214300.01)Vigna nepalensis