GBrowse Details

Vigan.01G170500.01

Basic Information:
Name: Vigan.01G170500.01
Multiple alignment
Variant Information
Position: Chr01:19618837..19623051 (- strand)
Length: 4215
Functional Information:
Description: Similar to Uncharacterized protein. [I1KRD4, Glycine max]
GO: Biological Process: proteolysis (GO:0006508)
Cellular Component: proteasome regulatory particle (GO:0005838)
InterPro: SAC3/GANP/Nin1/mts3/eIF-3 p25 (IPR005062)
26S proteasome non-ATPase regulatory subunit Rpn12 (IPR006746)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:99.85,46.14,54.97,34.97,70.09,68.96,44.08,39.64
Arabidopsis thaliana homolog: AT1G64520.1
Automatic updates:
Name: NM_001254242 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max 26S proteasome non-ATPase regulatory subunit RPN12A-like (LOC100785835), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:19618837..19619367 (- strand)
Length: 531
Type: three_prime_UTR
Position: Chr01:19619368..19619508 (- strand)
Length: 141
Type: CDS
Position: Chr01:19620265..19620376 (- strand)
Length: 112
Type: CDS
Position: Chr01:19620730..19620993 (- strand)
Length: 264
Type: CDS
Position: Chr01:19621231..19621333 (- strand)
Length: 103
Type: CDS
Position: Chr01:19622099..19622177 (- strand)
Length: 79
Type: CDS
Position: Chr01:19622795..19622899 (- strand)
Length: 105
Type: CDS
Position: Chr01:19622900..19623051 (- strand)
Length: 152
Type: five_prime_UTR

>Vigan.01G170500.01 class=Sequence position=Chr01:19618837..19623051 (- strand)
TTTTAAAGCC CGAGGCCAAT TTCATAGAAA TATGAAAGTC GCGAAGCGTT CAGTATCCCT GTGATTCTTG TCTACTAAGG
TTTTCGTTGG GAGCACTCAA GGTATTCTTT TTCGAAGTTG TGAAAAGCAC TGCACATCCA AATTGAGAAG ACATGGATCC
CAAGCTAACC GAGGTTTCTC AGCTCTTCGA TCGCTTTAAG GCTTCGTTTC TCAGGAACGA CTACGACAAC TGTTCCAATC
TCCTTTCTCA ACTAAAGGTA TTTCCCACCC AACCTAACCC TAGTTTAATT ATTGCTCTGA GTTCCAAAAT TTGCTCATCA
TTTACTTTCT TTCTTCTCTT TGAAGATCGA TTCTGTTGCA TTGTTTGCTT TTCTTCAATT TATTTTTATT TTGAACTTGG
CCTTGTGGAA GTGAGAAAGT TGTCGGATGG GGTATGTTGC TTCTGTTGAG ATCATTATAG CAATAAGTAT TCTGGGTAAG
ATAGATTACA CCGAAACCAA CGCTATTGTA GATTTAAGAA GTTTTCTTAG TTATCTCTTG GAAACAATAT GCACCGGGCA
GATAAATTGG GTTTTCACCT TTGGATTTGA CTCATCAGAG AGAGGGAGTG TACTGTGGAG GATAAAATGT GTTGATTGAT
TTACTAGTTC CCCACTCAAG CTCAAAGGGG TGGTTTTGCT TGGAAATATG ATCTCTTAGT ATTTATCGGG CAAAGACTTT
TATGATTAAT GCTACAAACA GCTTGAATTC ATAGCTCATG TCTATTTATA ATCTATATAA GATGGAGGTT TGAAAGGTCT
TAGCTTCCTT CTTTTTGGTG CTTATTTGCA GCTGTTGTTA TTTATTTAAT TGTTGCCTCG CTGTTTATTT GTAGGTGTTA
CTGACAGGGT TCAGAAGCCT TCCACCATTG TTTGCAGATA CACCTAATGC TGTTCATGAG TTAACAATAG CAAGTAACAC
TCTTCGCTCC AATCTATTAC AGCGTTCCCC TACCCCCATC TTTTTTGTGT TCATAGGCCT ATAGCCATTG CTTAGGCTTA
GACTAATTAT TTAAGTAGTA AAGCGAAACC TGTTCGCAAA TCTTAAATTT GCTGATTCAT AAAGGATATC AATATGCACT
GGCTTTCCTG TAAGCTATTT GTGATTGAAA ATGGAATTTC TCTTCTATAC CCTCTATCTT GTAGGCAGTA AGTAAAGCTG
AAACTTAAAA ATAGTGTTTG TTGTTAGAAG ATAATATTGC TATCTGGTTG TTGAGAGAAG TTAACCTTTG TTTTACCATA
TGAGGAATGG TTAATGTGGT TTACTCTGCA CTAGAAGAGA ATGAAAAGAG TATAATAATT TTTTCTTCAT CTAAATTTAG
AAAATGTTAG ATGCTTGGAG GCAGCAGAAT AATGAGCTAG AGCCTTATTG ATTGAATGAA ACAAATTACT AAAACAATAG
CTGAATGACT GAATCATATC AGCATGGTTA AGATAATAAA TATTTCAAAA ATGTAAAAGA AAAAAATGTT AGAAGTTCTA
TATTTAATAT TTCTTTTTTC TGTTGGTTTT TGCACTTCTA GAACCATATT GATAATCAAG GAAATTAATA AACAATATCT
CAATGACTGA ATCATATCAA CATGAATAAG ACAATAAATA TTTCAAAAAT GAAAAGGAAA AAAGTTAAAA GTTCTATATC
TAAGATTTCC TTTTTCTGTT GGTTTTTTGA ACTTCTAGGG GATATATACG AGCATGCTGT TGTCCTTAGT GTGAAAACTG
AGGATCAAGA TGCCTTTGAG AGGGATTTCT TCCAGTTGAA ACCTTATTAT ACAGATGCCT GGTAACTTCT GCTTGTCCCT
CTCTTTACAC AAAATATCCA TTTCTACTCT GGAACAGATA AATCTGCAAC GAAAGCAAAG AATGGACATC TTCTGATTGT
TCACTTATAA ACTTGTATAG TGTATGCCAA GAAGTATTAA AGTAGTATCA ATATTAAAAT ATGATGTTAT TTGCAATTCT
TCTTTCACTC TTCCTTGTTG GATTCTTGTA TTTCATGGGG GCTTTTCTTG TGTGGCAGCA ATCGGCTTCC ACCATCACCT
CAGGAGTACC CAATACTCGG TCTCAACCTG TTGAGACTAC TTGTGCAGAA TAGGATTGCT GAATTCCATA CTGAGTTGGA
ATTACTTTCT TCTGCTGCAC TAGAGAATCC TTGCATTAAG CATGCCGTGG AGTTGGAACA ATCTTTTATG GAAGGAGCAT
ATAATCGTGT CTTGAGTGCT AGACAGACTG TACCGCATGA TACATACGTT TATTTCATGG ATCTCTTGGC AAAGACTGTC
AGGTAATATT TGCTATTATT GTTTTATTTT GATTGCATAG GGGATGGTTG AACTCAAGTG ATAAACAAGA GGAAACTGGA
ACCCCTACTT GATTTATTTT GGGCTTATAG TTTACACTGT TTTGGAATTT TCTCTTCCAA ACTGATCTCT AGAATTATCA
TTAACTTGAG TAATTTTTAT TCTTGTAATT CTATATAATA TTTTATTTGC TTCCTGCAAT GGCAATTTGA TGGAAGCACG
ACCTTTACTG TAAACTTAAA GCTCAAACAC CTGCCTCTCT AGTGGTTCTA TTCTTTTCTG ATGGTGCATC TATATTGATT
TTCTAATTAG TTTTTACCTA TCTTCAAACA TTCAGAGATG AAATAGCAGG CTGTAGCGAG AAGGCATATG ACTATCTTTC
AATTAAGGAT GCAAAGCAAA TGTTATTGTT CTCATTAGAT CAGGAACTCC TGGAATATAT AAAAGAGGTG AACCATCTTA
TGTCCCCTTA ATTTTTGTGT TTCTTTGCCG GGGGAGGGAG GTGTTGATAT TGGAATTGGG CATGAGATTG GACTTGACAT
TCGGAATTCA ACCTTTGATT TTTAATGATG GTTATGTTTC GAAGTCCTTT CAGAATTGAA AAGACAATTC CATGGAATTG
TAATATTAAT AATAATCACA CTTTAACAAT TCCTAACCTC TACCTCTGAA TCACAATTTC CACACTTCAC TCCCCTTTAA
CATACCTGTT ATTTATTTCC GCTTTAGCTT CCACGATTAC TACTATCCAC TGTCAGTGTT CCTATTGTCA CCACCTATAT
TCAACCACCA AGACCACCAC CATTATTTTT GTCATCACCA AGACCACCAT CACTATTGTT GTCATCACCC TTTCCCCACC
ACTGTGACCA GTGCCACCAC TTATTGTCCC TCTGTTACCA TGACCGGTGA CTATTTTCTC CATTTTCACT TTCAAATTAA
TATTTTTTAT TCAAACATGA CATAACTCAC CCTCTAACAA AAGGAAATTG AAGTTAAAAC TTATAATTCT ACACTCTAAT
TATTTGTACA GACCAAATCT ATAAATCATG ATCTCAAGTA TTCCAGTTGT TAGAATAGGA ATTGGAATTA TAATTATAAA
TTCTATTTTC ATGTTTCAAA CGGACATGGA AAATATTGAT ATCTCTTTCA ATAATTACAT TTGTTTTCTC TCATGTTCTG
AAGTTATTAT CTATTTATTG AAGGAACATC CTGAGTGGGA TATAAAGAAT GGTAGTGTCT TTTTCCAAAA GGCAAAAGAA
TCTGCTCCGT GCAAAGAAAT TCCCTCTCTG CAGCTCATCA ACCAGACACT TAGTTATGCT AGGGAGTTGG AGAGGATTGT
CTGAAAAGAT ATGCGAAGGC GGCTTTTGTG TTTCAAAATT TCTAGGTGCC TGGATAATAG CTGCCTGCTA ATATTGTCAT
CTGAAATTGT TTAATTCTCA TTCAATGCGG AACTAAAAAA TTGTTCACCA CTGTATTTTG ATCATTTATG GTTACTTTTA
TTTTTTTACA TCGTGCTCTG GAAACAGAAA AAAATGTTTC ATACGTACTT TTTATTTTTT TATTTTGATG ATTATATGAT
TCATGATTCT GTAGTCTAAA TTTTAAAGCC ATAGAAAGGT TCATACCCAG AATATGGGGA TATAAAATTT CCAAGTCATG
CATTTGGTGA CTTGGGTGTT GGGTTTCCTT TTTAGAATGA TGTGCTCGGC TGTTGGGTTT TCTTTTTCTA AACAAATCAA
ATCAGCAAAT TGTATGTGAT AGTAGTTAGG AGAAAATATT GAGATCTGAC TTATTTATTT CTATCGTAAT TTGTGAACCC
TTATGGAGTG TTGTTTTTGT GTACAGTCAC GACGATAAAA ATATTTGCTT TCAAC

>Vigan.01G170500.01
TTTTAAAGCC CGAGGCCAAT TTCATAGAAA TATGAAAGTC GCGAAGCGTT CAGTATCCCT GTGATTCTTG TCTACTAAGG
TTTTCGTTGG GAGCACTCAA GGTATTCTTT TTCGAAGTTG TGAAAAGCAC TGCACATCCA AATTGAGAAG ACATGGATCC
CAAGCTAACC GAGGTTTCTC AGCTCTTCGA TCGCTTTAAG GCTTCGTTTC TCAGGAACGA CTACGACAAC TGTTCCAATC
TCCTTTCTCA ACTAAAGGTG TTACTGACAG GGTTCAGAAG CCTTCCACCA TTGTTTGCAG ATACACCTAA TGCTGTTCAT
GAGTTAACAA TAGCAAGGGA TATATACGAG CATGCTGTTG TCCTTAGTGT GAAAACTGAG GATCAAGATG CCTTTGAGAG
GGATTTCTTC CAGTTGAAAC CTTATTATAC AGATGCCTGC AATCGGCTTC CACCATCACC TCAGGAGTAC CCAATACTCG
GTCTCAACCT GTTGAGACTA CTTGTGCAGA ATAGGATTGC TGAATTCCAT ACTGAGTTGG AATTACTTTC TTCTGCTGCA
CTAGAGAATC CTTGCATTAA GCATGCCGTG GAGTTGGAAC AATCTTTTAT GGAAGGAGCA TATAATCGTG TCTTGAGTGC
TAGACAGACT GTACCGCATG ATACATACGT TTATTTCATG GATCTCTTGG CAAAGACTGT CAGAGATGAA ATAGCAGGCT
GTAGCGAGAA GGCATATGAC TATCTTTCAA TTAAGGATGC AAAGCAAATG TTATTGTTCT CATTAGATCA GGAACTCCTG
GAATATATAA AAGAGGAACA TCCTGAGTGG GATATAAAGA ATGGTAGTGT CTTTTTCCAA AAGGCAAAAG AATCTGCTCC
GTGCAAAGAA ATTCCCTCTC TGCAGCTCAT CAACCAGACA CTTAGTTATG CTAGGGAGTT GGAGAGGATT GTCTGAAAAG
ATATGCGAAG GCGGCTTTTG TGTTTCAAAA TTTCTAGGTG CCTGGATAAT AGCTGCCTGC TAATATTGTC ATCTGAAATT
GTTTAATTCT CATTCAATGC GGAACTAAAA AATTGTTCAC CACTGTATTT TGATCATTTA TGGTTACTTT TATTTTTTTA
CATCGTGCTC TGGAAACAGA AAAAAATGTT TCATACGTAC TTTTTATTTT TTTATTTTGA TGATTATATG ATTCATGATT
CTGTAGTCTA AATTTTAAAG CCATAGAAAG GTTCATACCC AGAATATGGG GATATAAAAT TTCCAAGTCA TGCATTTGGT
GACTTGGGTG TTGGGTTTCC TTTTTAGAAT GATGTGCTCG GCTGTTGGGT TTTCTTTTTC TAAACAAATC AAATCAGCAA
ATTGTATGTG ATAGTAGTTA GGAGAAAATA TTGAGATCTG ACTTATTTAT TTCTATCGTA ATTTGTGAAC CCTTATGGAG
TGTTGTTTTT GTGTACAGTC ACGACGATAA AAATATTTGC TTTCAAC

>Vigan.01G170500.01
ATGGATCCCA AGCTAACCGA GGTTTCTCAG CTCTTCGATC GCTTTAAGGC TTCGTTTCTC AGGAACGACT ACGACAACTG
TTCCAATCTC CTTTCTCAAC TAAAGGTGTT ACTGACAGGG TTCAGAAGCC TTCCACCATT GTTTGCAGAT ACACCTAATG
CTGTTCATGA GTTAACAATA GCAAGGGATA TATACGAGCA TGCTGTTGTC CTTAGTGTGA AAACTGAGGA TCAAGATGCC
TTTGAGAGGG ATTTCTTCCA GTTGAAACCT TATTATACAG ATGCCTGCAA TCGGCTTCCA CCATCACCTC AGGAGTACCC
AATACTCGGT CTCAACCTGT TGAGACTACT TGTGCAGAAT AGGATTGCTG AATTCCATAC TGAGTTGGAA TTACTTTCTT
CTGCTGCACT AGAGAATCCT TGCATTAAGC ATGCCGTGGA GTTGGAACAA TCTTTTATGG AAGGAGCATA TAATCGTGTC
TTGAGTGCTA GACAGACTGT ACCGCATGAT ACATACGTTT ATTTCATGGA TCTCTTGGCA AAGACTGTCA GAGATGAAAT
AGCAGGCTGT AGCGAGAAGG CATATGACTA TCTTTCAATT AAGGATGCAA AGCAAATGTT ATTGTTCTCA TTAGATCAGG
AACTCCTGGA ATATATAAAA GAGGAACATC CTGAGTGGGA TATAAAGAAT GGTAGTGTCT TTTTCCAAAA GGCAAAAGAA
TCTGCTCCGT GCAAAGAAAT TCCCTCTCTG CAGCTCATCA ACCAGACACT TAGTTATGCT AGGGAGTTGG AGAGGATTGT
CTGA

>Vigan.01G170500.01
MDPKLTEVSQ LFDRFKASFL RNDYDNCSNL LSQLKVLLTG FRSLPPLFAD TPNAVHELTI ARDIYEHAVV LSVKTEDQDA
FERDFFQLKP YYTDACNRLP PSPQEYPILG LNLLRLLVQN RIAEFHTELE LLSSAALENP CIKHAVELEQ SFMEGAYNRV
LSARQTVPHD TYVYFMDLLA KTVRDEIAGC SEKAYDYLSI KDAKQMLLFS LDQELLEYIK EEHPEWDIKN GSVFFQKAKE
SAPCKEIPSL QLINQTLSYA RELERIV*