VIGGS:Variant information

Chr01:19618837 - 19623051

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SNPs

Position	Ref.	Alt.	Depth	Score	Freq. Of Alt.	Effect	Species
19618869	T	A	52	2259.77	1.00	UPSTREAM(\|3823\|\|None\|Vigan.01G170400.01), UTR_3_PRIME(\|499\|\|None\|Vigan.01G170500.01)	Vigna nepalensis
19618979	G	T	47	1890.77	1.00	UPSTREAM(\|3933\|\|None\|Vigan.01G170400.01), UTR_3_PRIME(\|389\|\|None\|Vigan.01G170500.01)	Vigna nepalensis
19619025	G	A	54	2263.77	1.00	UPSTREAM(\|3979\|\|None\|Vigan.01G170400.01), UTR_3_PRIME(\|343\|\|None\|Vigan.01G170500.01)	Vigna nepalensis
19619043	C	G	52	2372.77	1.00	UPSTREAM(\|3997\|\|None\|Vigan.01G170400.01), UTR_3_PRIME(\|325\|\|None\|Vigan.01G170500.01)	Vigna nepalensis
19619046	C	T	51	2348.77	1.00	UPSTREAM(\|4000\|\|None\|Vigan.01G170400.01), UTR_3_PRIME(\|322\|\|None\|Vigan.01G170500.01)	Vigna nepalensis
19619293	T	A	69	2742.77	1.00	UPSTREAM(\|4247\|\|None\|Vigan.01G170400.01), UTR_3_PRIME(\|75\|\|None\|Vigan.01G170500.01)	Vigna nepalensis
19619609	G	T	64	2650.77	1.00	INTRON(\|\|\|None\|Vigan.01G170500.01), UPSTREAM(\|4563\|\|None\|Vigan.01G170400.01)	Vigna nepalensis
19619851	T	C	43	1656.77	1.00	INTRON(\|\|\|None\|Vigan.01G170500.01), UPSTREAM(\|4805\|\|None\|Vigan.01G170400.01)	Vigna nepalensis
19620152	A	G	52	2094.77	1.00	INTRON(\|\|\|None\|Vigan.01G170500.01)	Vigna nepalensis
19620759	A	G	55	2255.77	1.00	SYNONYMOUS_CODING(SILENT\|taT/taC\|Y174\|None\|Vigan.01G170500.01)	Vigna nepalensis
19621362	G	A	63	2500.77	1.00	INTRON(\|\|\|None\|Vigan.01G170500.01)	Vigna nepalensis
19621499	G	T	65	2474.77	1.00	INTRON(\|\|\|None\|Vigan.01G170500.01)	Vigna nepalensis
19621659	A	C	56	2239.77	1.00	INTRON(\|\|\|None\|Vigan.01G170500.01)	Vigna nepalensis
19621843	T	G	68	2628.77	1.00	INTRON(\|\|\|None\|Vigan.01G170500.01)	Vigna nepalensis
19621927	A	G	67	2707.77	1.00	INTRON(\|\|\|None\|Vigan.01G170500.01)	Vigna nepalensis
19622076	T	C	55	2197.77	1.00	INTRON(\|\|\|None\|Vigan.01G170500.01)	Vigna nepalensis
19622352	A	G	52	2124.77	1.00	INTRON(\|\|\|None\|Vigan.01G170500.01)	Vigna nepalensis
19622560	G	A	62	2397.77	1.00	INTRON(\|\|\|None\|Vigan.01G170500.01)	Vigna nepalensis
19622600	A	T	54	2155.77	1.00	INTRON(\|\|\|None\|Vigan.01G170500.01)	Vigna nepalensis
19622697	C	A	57	2377.77	1.00	INTRON(\|\|\|None\|Vigan.01G170500.01)	Vigna nepalensis
19622747	G	T	62	2309.77	1.00	INTRON(\|\|\|None\|Vigan.01G170500.01)	Vigna nepalensis
19622764	T	G	55	2158.77	1.00	INTRON(\|\|\|None\|Vigan.01G170500.01)	Vigna nepalensis
19622950	C	G	30	1115.77	1.00	UTR_5_PRIME(\|51\|\|None\|Vigan.01G170500.01)	Vigna nepalensis

Indels

Position	Ref.	Alt.	Depth	Score	Freq. Of Alt.	Effect	Species
19618889	TA	T	51	2249.73	1.00	UPSTREAM(\|3844\|\|None\|Vigan.01G170400.01), UTR_3_PRIME(\|478\|\|None\|Vigan.01G170500.01)	Vigna nepalensis
19619223	A	ATACACC	65	2988.73	1.00	UPSTREAM(\|4178\|\|None\|Vigan.01G170400.01), UTR_3_PRIME(\|144\|\|None\|Vigan.01G170500.01)	Vigna nepalensis
19619364	C	CT	59	1966.73	1.00	UPSTREAM(\|4319\|\|None\|Vigan.01G170400.01), UTR_3_PRIME(\|3\|\|None\|Vigan.01G170500.01)	Vigna nepalensis
19622925	CT	C	33	1099.73	1.00	UTR_5_PRIME(\|27\|\|None\|Vigan.01G170500.01)	Vigna nepalensis