GBrowse Details

Vigan.01G141200.01

Basic Information:
Name: Vigan.01G141200.01
Multiple alignment
Variant Information
Position: Chr01:14621334..14625398 (+ strand)
Length: 4065
Functional Information:
Description: Similar to Malate dehydrogenase. [I1KL87, Glycine max]
GO: Biological Process: carbohydrate metabolic process (GO:0005975)
Biological Process: malate metabolic process (GO:0006108)
Biological Process: cellular carbohydrate metabolic process (GO:0044262)
Biological Process: oxidation-reduction process (GO:0055114)
Molecular Function: catalytic activity (GO:0003824)
Molecular Function: oxidoreductase activity (GO:0016491)
Molecular Function: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor (GO:0016616)
Molecular Function: L-malate dehydrogenase activity (GO:0030060)
InterPro: Lactate/malate dehydrogenase, N-terminal (IPR001236)
L-lactate/malate dehydrogenase (IPR001557)
Malate dehydrogenase, type 1 (IPR010097)
Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal (IPR015955)
NAD(P)-binding domain (IPR016040)
Lactate/malate dehydrogenase, C-terminal (IPR022383)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:112.74,29.60,55.03,269.50,25.32,32.58,27.11,38.62
Arabidopsis thaliana homolog: AT2G22780.1
Automatic updates:
Name: NM_001251558 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max peroxisomal malate dehydrogenase (LOC100170735), mRNA.
PubMed ID: 18281324 NCBI(pubmed)
Status: Known Variant
Name: NM_001252960 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max malate dehydrogenase, glyoxysomal-like (LOC100799793), mRNA.
PubMed ID: 18281324 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr01:14621334..14621698 (+ strand)
Length: 365
Type: five_prime_UTR
Position: Chr01:14621699..14621770 (+ strand)
Length: 72
Type: CDS
Position: Chr01:14621874..14622089 (+ strand)
Length: 216
Type: CDS
Position: Chr01:14622342..14622656 (+ strand)
Length: 315
Type: CDS
Position: Chr01:14622936..14623025 (+ strand)
Length: 90
Type: CDS
Position: Chr01:14623108..14623191 (+ strand)
Length: 84
Type: CDS
Position: Chr01:14624138..14624173 (+ strand)
Length: 36
Type: CDS
Position: Chr01:14624289..14624378 (+ strand)
Length: 90
Type: CDS
Position: Chr01:14624468..14624562 (+ strand)
Length: 95
Type: CDS
Position: Chr01:14624651..14624723 (+ strand)
Length: 73
Type: CDS
Position: Chr01:14624724..14625398 (+ strand)
Length: 675
Type: three_prime_UTR

>Vigan.01G141200.01 class=Sequence position=Chr01:14621334..14625398 (+ strand)
ATCTAGCGTG TGAGTCAGGT TCTGACTTAA AAAAACAGCC ATCTTAATCA TGAACCGAAT AGTTAGCAAT CTGCTTGAAG
CTTTGTTAAA ATTGTGAGAG CCACATTCAA TTCAGACCTA AGAAGATGAT AGGATAAGAA TTCAGAAATC TGGATTCCAC
AAAAAATTCA TTTTTTCGTG AAATTTTTTT AAAAGGGGAA AAACATTGGA CGTATATGTC AACTTCCTCA TTCTCATTAT
CCCTTCATTT TATTTTCTGT TCATAAATTT ATATTCTTTT GCTCCCATCA TTTCTTTTCA AATTTTCCAC CCTCAGCTTC
AACACACTGT TTCTCCTTCT CTGATCGTAA CAGTGATACA AAAAAATGGA GGCACGTGCA GGAGCCAATC AGCGTATTGC
AAGAATCTCT GCTCATCTTC AGCCTTCAAA TTTCCAGGTT TCTTCCTCTA ATTCACGTCA CATCTGGATC TGTGTTCCTT
GCATGATCAA TAAGTTTTAG CTTCCATTTT CTGAAACAAG TTTTTAATTT GTTGTGACAG GAAAAGGGCG ATGTTATTCT
CAAGAGAGCT GAGTGCAGAG CAAAGGGTGG GGCACCTGGA TTCAAAGTGG CAATTTTGGG GGCTGCTGGC GGAATTGGTC
AATCCCTTTC TTTGTTGATG AAGATTAACC CATTGGTTTC AGTTCTTCAT CTTTATGATG TTGTCAACAC CCCCGGTGTC
ACAGCTGATA TTAGCCACAT GGACACTGGT GCTGTGGTAA ATTTCTTCTC ATTGAATTAT TCATTGTCAA TTAAATCAGA
ACAGAAGACT GAGTTGTAGT TTTTGTGCTA ATGCTTAAGG CTGGTTACAA GAGTTTTCCC CTTTGGTACT GATGGAGATA
TTTTTGAGGG GGGTTTCTTT TAAGGATCAA GGAATTTTTT ATTGAAAATA TTTTTATGTT GGAACTTAAC GATGTTTAGC
TGACATTTTT TCAAATAATG CGTGTTCTTT TTTTTTTTTG GATTTTAGGT TCGTGGCTTT CTGGGACAAC CACAACTCGA
GAGTGCACTC ACTGGCATGG ACTTGGTAAT CATACCTGCT GGGGTGCCAA GGAAACCTGG GATGACAAGG GATGATTTAT
TTAAAATAAA TGCTGGAATT GTGAAGACCC TTAGTGAAGG AATTGCCAAG TCCTGCCCCA ATGCAATTGT CAACTTGATC
AGTAATCCCG TGAATTCCAC TGTTGCTATT GCTGCAGAGG TTTTCAAGAG AGCCGGTACA TATGACCCAA AGCGACTTCT
GGGTGTTACA GCTCTTGACG TTGTGAGGGC AAATACTTTT GTGGTAAGCA TTTCTTGCTG TTCTTATTCA AACAGTCTAT
AACTCATTTA AATTTCCTTC ATGCTGTGCT GTAGAAATAA AATATATAGG AGACTACAAG CTAAAAGTAT AATCAATTTG
GAGTTAACTG TTATATTAAA TTGGTTTGTT TATGTGGTTA TGAAAAGTAT TACAATTGGT TGAACAAAGC AGATATTTCT
ACATGTGAGA TTTTTATAGT GTATGCTGGA ATTGTATGAA TTCAGGCTGG TGTGTATGTC CGGCCATGTT TTCTTCTTGC
AGGCAGAGGT ACTTGGAGTG GATCCAAGAG AGGTTGACGT TCCAGTGGTG GGAGGTCATG CTGGGGTCAC TATTTTGCCT
CTTTTGTCAC AGGTCTTGTA GAGAATACTC CCTTAATTTA AAAAGTATCA TAGAATCGAC AGGTCTTGAA ACTTCTTCAA
ACTTGCTTTA ACAGGTTAAG CCTCCCAGTA GCTTCACTGC AGAAGAAACT GAATACCTGA CAAATCGCAT TCAAAATGGT
GGAACTGAAG TTGTGGAGGT ACTTTCATTT GAATCTATAA CCTCAACAGT TAAACGGAGT AGAAGAGGGA TAATTAATAA
GATCCATTGC ATATCATATG TTGATAATTT ACGGTCATAC AAATATATAC TTGTTCCTAT GGTCATTTCT TAGTTGATGA
CAGATTGTGT CACTGTCAAT TTTTATGCAT CCTTCTTTTC AGTTACCGTT ACCAACATCT GCCTGATGCT AGATTAACAG
TGAAATATTA ATAGAGGTCA GAAAAATATA ATATGATGCT GCAACTATAA GTTGTTTAAG GTGCTATGAT CCAAGATAAT
GCAAGATTGG TGAAACTTCT CCAATTTCCT TCATCATCAC CGGAGACTAC AGTGGACACT ATCAATTTTG CTTTAGATGT
TTAATAAGAG GAGCGTATAA ACTTGACCAT ATGAATTTTG CTTTAGATGT TTAGACAAGT GAAAATACCC AAACAATGCT
TGACAATTAG AGGAGACTAT ACACTTGACC GTATCATTTT TTAGTTAAGA TTTTCAAACA AGTGAAAGTA CCCAAACAAA
GGTGCATACT ATAATCAGAA AACATAGAAG AATACAGAGA AGTATAGTAG AATATAACTT ATCATTGAAA GAGAGTGAAA
ATTCCTCTTT GGTATCACAA AGAGTTGTGT TTAAACTAGT ATCAACAAAA TAAAACTAAC TAATGTAAAA CTTGTCAACT
TTAAAATAAT GACTAGTAGC AATAGTTCAA TAGTTCAGCT GTAAAAGAAT GGCTAATAAC AGTAGTTATT TGTATCGTAA
CACATTTTTC TGGTCTGAGA TTATCTCTAC TGCTCAACCA TGTTTCCGTA TCCACGACCT TAGCTTTTAA AGAAATCTAA
AATTTTGTTT TTCGTTTCCT GGTCTATATT TGGTTGTGAT TGAATGTTCA TCATAATCAA TTGACAATTA TATTCATGTT
ACAGGCAAAA GCTGGTGCTG GTTCGGCCAC ACTATCCATG GTTAATTGTT TATCAACTTT ATCTTCATAT TTCTACATAT
ATATCATCAA TCAAGTGTCA ATTGTGTCAT AGTAGACAAA CATGCAAAGT TGAAATCTCA CTCCTGATTG TGTAGGCATA
TGCAGCTGCC AAGTTTGCGG ACGCATGCCT CCGTGGCTTA AAAGGAGAAG CTGGGGTGGT GGAGTGTGCT TTTGTTGATT
CTCAGGTTCC ATTTTAACGT CCTTTTCCTT GCATTGTTCT CTATCTTGTC TTTTAGATCT TATTTAACAG TATCATATGC
CTTGCCTTCG ATAGGTTACA GAACTTCCCT TCTTTGCAAC GAAGGTACGT CTCGGTCGTG CTGGAGCAGA AGAGGTATAT
CAATTAGGCC CCCTCAACGA GTATGAAAGG TATCATAGTT TATGAATCTA TTCCCTATTT TCTTGGATAC AGTAAGCAGC
ACAGAAAGTG AAACTTTTGG TGTGTAATGC TTCACAGGAT TGGGTTGGAA AAAGCAAAGA AAGAGTTAGC AGGAAGCATC
CAGAAGGGTA TAGACTTCAT CAAAAAATAA ATGTGACCAG GAAAAACTAG TTTCTGTTTC TTTTAAATAA AGACCTTCTG
TAACGCTTCC CTTTGTTCAT AGTAGATTTT TTTGTCTTAA AAATATCTTT TAAATTTTCG GTGTCATCCC TTACTACTGA
TGATCACGGA TATCGTGGAA CCGTATAATG ATCTGAAAGA TACTACAATA TGGGTCTTTT GTACTAATTC AAAATCTTAT
TTTACTCGCA ACACATTTTA GTATTTGACA GTGCATAACA AATAGTAATG GCTCTTTTGT TCCTTTAGAT TGTGCTGTAT
ATGCAGAAAC TGAGAAGGTT GATGATATAA TTTGTGGTCA TATCTTTTCT CTAATCAATG GTATGAGATC TAACACCAAT
GGTCCACTCT TCTGTCACCC ATCAGAGCAA ACTAATCTCC ATAATCAGGG ATAAAAAAAT GAAATAAAGG ACAGAATTTT
GGAGAAGACA AAATACATAC GTCCTCTGTC AATGACATGA TGGCATCAGG TTGTGCAAGA ACCATCATTA GATTGTCTTA
TTGCAAAGTG GGAAGTTGTA AGATGAGATG CAGCAGAAGA TTGTTTTTTG GGGCCGTGTA GAAGCATCTA TAAATAAAGT
TGAGTGATAG AAAATATATT CAGTTTCTCG ATTGCATGTT CTTAACTCAA CTCAGCAAGC TCGGG

>Vigan.01G141200.01
ATCTAGCGTG TGAGTCAGGT TCTGACTTAA AAAAACAGCC ATCTTAATCA TGAACCGAAT AGTTAGCAAT CTGCTTGAAG
CTTTGTTAAA ATTGTGAGAG CCACATTCAA TTCAGACCTA AGAAGATGAT AGGATAAGAA TTCAGAAATC TGGATTCCAC
AAAAAATTCA TTTTTTCGTG AAATTTTTTT AAAAGGGGAA AAACATTGGA CGTATATGTC AACTTCCTCA TTCTCATTAT
CCCTTCATTT TATTTTCTGT TCATAAATTT ATATTCTTTT GCTCCCATCA TTTCTTTTCA AATTTTCCAC CCTCAGCTTC
AACACACTGT TTCTCCTTCT CTGATCGTAA CAGTGATACA AAAAAATGGA GGCACGTGCA GGAGCCAATC AGCGTATTGC
AAGAATCTCT GCTCATCTTC AGCCTTCAAA TTTCCAGGAA AAGGGCGATG TTATTCTCAA GAGAGCTGAG TGCAGAGCAA
AGGGTGGGGC ACCTGGATTC AAAGTGGCAA TTTTGGGGGC TGCTGGCGGA ATTGGTCAAT CCCTTTCTTT GTTGATGAAG
ATTAACCCAT TGGTTTCAGT TCTTCATCTT TATGATGTTG TCAACACCCC CGGTGTCACA GCTGATATTA GCCACATGGA
CACTGGTGCT GTGGTTCGTG GCTTTCTGGG ACAACCACAA CTCGAGAGTG CACTCACTGG CATGGACTTG GTAATCATAC
CTGCTGGGGT GCCAAGGAAA CCTGGGATGA CAAGGGATGA TTTATTTAAA ATAAATGCTG GAATTGTGAA GACCCTTAGT
GAAGGAATTG CCAAGTCCTG CCCCAATGCA ATTGTCAACT TGATCAGTAA TCCCGTGAAT TCCACTGTTG CTATTGCTGC
AGAGGTTTTC AAGAGAGCCG GTACATATGA CCCAAAGCGA CTTCTGGGTG TTACAGCTCT TGACGTTGTG AGGGCAAATA
CTTTTGTGGC AGAGGTACTT GGAGTGGATC CAAGAGAGGT TGACGTTCCA GTGGTGGGAG GTCATGCTGG GGTCACTATT
TTGCCTCTTT TGTCACAGGT TAAGCCTCCC AGTAGCTTCA CTGCAGAAGA AACTGAATAC CTGACAAATC GCATTCAAAA
TGGTGGAACT GAAGTTGTGG AGGCAAAAGC TGGTGCTGGT TCGGCCACAC TATCCATGGC ATATGCAGCT GCCAAGTTTG
CGGACGCATG CCTCCGTGGC TTAAAAGGAG AAGCTGGGGT GGTGGAGTGT GCTTTTGTTG ATTCTCAGGT TACAGAACTT
CCCTTCTTTG CAACGAAGGT ACGTCTCGGT CGTGCTGGAG CAGAAGAGGT ATATCAATTA GGCCCCCTCA ACGAGTATGA
AAGGATTGGG TTGGAAAAAG CAAAGAAAGA GTTAGCAGGA AGCATCCAGA AGGGTATAGA CTTCATCAAA AAATAAATGT
GACCAGGAAA AACTAGTTTC TGTTTCTTTT AAATAAAGAC CTTCTGTAAC GCTTCCCTTT GTTCATAGTA GATTTTTTTG
TCTTAAAAAT ATCTTTTAAA TTTTCGGTGT CATCCCTTAC TACTGATGAT CACGGATATC GTGGAACCGT ATAATGATCT
GAAAGATACT ACAATATGGG TCTTTTGTAC TAATTCAAAA TCTTATTTTA CTCGCAACAC ATTTTAGTAT TTGACAGTGC
ATAACAAATA GTAATGGCTC TTTTGTTCCT TTAGATTGTG CTGTATATGC AGAAACTGAG AAGGTTGATG ATATAATTTG
TGGTCATATC TTTTCTCTAA TCAATGGTAT GAGATCTAAC ACCAATGGTC CACTCTTCTG TCACCCATCA GAGCAAACTA
ATCTCCATAA TCAGGGATAA AAAAATGAAA TAAAGGACAG AATTTTGGAG AAGACAAAAT ACATACGTCC TCTGTCAATG
ACATGATGGC ATCAGGTTGT GCAAGAACCA TCATTAGATT GTCTTATTGC AAAGTGGGAA GTTGTAAGAT GAGATGCAGC
AGAAGATTGT TTTTTGGGGC CGTGTAGAAG CATCTATAAA TAAAGTTGAG TGATAGAAAA TATATTCAGT TTCTCGATTG
CATGTTCTTA ACTCAACTCA GCAAGCTCGG G

>Vigan.01G141200.01
ATGGAGGCAC GTGCAGGAGC CAATCAGCGT ATTGCAAGAA TCTCTGCTCA TCTTCAGCCT TCAAATTTCC AGGAAAAGGG
CGATGTTATT CTCAAGAGAG CTGAGTGCAG AGCAAAGGGT GGGGCACCTG GATTCAAAGT GGCAATTTTG GGGGCTGCTG
GCGGAATTGG TCAATCCCTT TCTTTGTTGA TGAAGATTAA CCCATTGGTT TCAGTTCTTC ATCTTTATGA TGTTGTCAAC
ACCCCCGGTG TCACAGCTGA TATTAGCCAC ATGGACACTG GTGCTGTGGT TCGTGGCTTT CTGGGACAAC CACAACTCGA
GAGTGCACTC ACTGGCATGG ACTTGGTAAT CATACCTGCT GGGGTGCCAA GGAAACCTGG GATGACAAGG GATGATTTAT
TTAAAATAAA TGCTGGAATT GTGAAGACCC TTAGTGAAGG AATTGCCAAG TCCTGCCCCA ATGCAATTGT CAACTTGATC
AGTAATCCCG TGAATTCCAC TGTTGCTATT GCTGCAGAGG TTTTCAAGAG AGCCGGTACA TATGACCCAA AGCGACTTCT
GGGTGTTACA GCTCTTGACG TTGTGAGGGC AAATACTTTT GTGGCAGAGG TACTTGGAGT GGATCCAAGA GAGGTTGACG
TTCCAGTGGT GGGAGGTCAT GCTGGGGTCA CTATTTTGCC TCTTTTGTCA CAGGTTAAGC CTCCCAGTAG CTTCACTGCA
GAAGAAACTG AATACCTGAC AAATCGCATT CAAAATGGTG GAACTGAAGT TGTGGAGGCA AAAGCTGGTG CTGGTTCGGC
CACACTATCC ATGGCATATG CAGCTGCCAA GTTTGCGGAC GCATGCCTCC GTGGCTTAAA AGGAGAAGCT GGGGTGGTGG
AGTGTGCTTT TGTTGATTCT CAGGTTACAG AACTTCCCTT CTTTGCAACG AAGGTACGTC TCGGTCGTGC TGGAGCAGAA
GAGGTATATC AATTAGGCCC CCTCAACGAG TATGAAAGGA TTGGGTTGGA AAAAGCAAAG AAAGAGTTAG CAGGAAGCAT
CCAGAAGGGT ATAGACTTCA TCAAAAAATA A

>Vigan.01G141200.01
MEARAGANQR IARISAHLQP SNFQEKGDVI LKRAECRAKG GAPGFKVAIL GAAGGIGQSL SLLMKINPLV SVLHLYDVVN
TPGVTADISH MDTGAVVRGF LGQPQLESAL TGMDLVIIPA GVPRKPGMTR DDLFKINAGI VKTLSEGIAK SCPNAIVNLI
SNPVNSTVAI AAEVFKRAGT YDPKRLLGVT ALDVVRANTF VAEVLGVDPR EVDVPVVGGH AGVTILPLLS QVKPPSSFTA
EETEYLTNRI QNGGTEVVEA KAGAGSATLS MAYAAAKFAD ACLRGLKGEA GVVECAFVDS QVTELPFFAT KVRLGRAGAE
EVYQLGPLNE YERIGLEKAK KELAGSIQKG IDFIKK*