Variant information

Chr01:14621334 - 14625398

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 [SNPs] [Indels]

SNPs

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
14621775CT481938.771.00INTRON(|||None|Vigan.01G141200.01)Vigna nepalensis
14621844CT512258.771.00INTRON(|||None|Vigan.01G141200.01)Vigna nepalensis
14621846GC502258.771.00INTRON(|||None|Vigan.01G141200.01)Vigna nepalensis
14621862TC491844.771.00INTRON(|||None|Vigan.01G141200.01)Vigna nepalensis
14621878AG481837.771.00NON_SYNONYMOUS_CODING(MISSENSE|aAg/aGg|K26R|None|Vigan.01G141200.01)Vigna nepalensis
14621909CT451713.771.00SYNONYMOUS_CODING(SILENT|tgC/tgT|C36|None|Vigan.01G141200.01)Vigna nepalensis
14621960TC462124.771.00SYNONYMOUS_CODING(SILENT|gcT/gcC|A53|None|Vigan.01G141200.01)Vigna nepalensis
14621963CG472124.771.00SYNONYMOUS_CODING(SILENT|ggC/ggG|G54|None|Vigan.01G141200.01)Vigna nepalensis
14622014AC411562.771.00SYNONYMOUS_CODING(SILENT|tcA/tcC|S71|None|Vigan.01G141200.01)Vigna nepalensis
14623506AC562251.771.00INTRON(|||None|Vigan.01G141200.01)Vigna nepalensis
14623548GT612416.771.00INTRON(|||None|Vigan.01G141200.01)Vigna nepalensis
14623863AG763262.771.00INTRON(|||None|Vigan.01G141200.01)Vigna nepalensis
14624112AT60137.770.12INTRON(|||None|Vigan.01G141200.01)Vigna nepalensis
14624240TC841284.770.39INTRON(|||None|Vigan.01G141200.01)Vigna nepalensis
14624241CA851284.770.40INTRON(|||None|Vigan.01G141200.01)Vigna nepalensis
14624247AG841245.770.40INTRON(|||None|Vigan.01G141200.01)Vigna nepalensis
14624254CA791204.770.42INTRON(|||None|Vigan.01G141200.01)Vigna nepalensis
14624299CA721017.770.43NON_SYNONYMOUS_CODING(MISSENSE|gCt/gAt|A275D|None|Vigan.01G141200.01)Vigna nepalensis
14624359GA951472.770.47NON_SYNONYMOUS_CODING(MISSENSE|tGt/tAt|C295Y|None|Vigan.01G141200.01)Vigna nepalensis
14624459CA941884.770.52INTRON(|||None|Vigan.01G141200.01)Vigna nepalensis
14624462CG921471.770.48INTRON(|||None|Vigan.01G141200.01), SPLICE_SITE_REGION(|||None|Vigan.01G141200.01)Vigna nepalensis
14624473AG871758.770.48SYNONYMOUS_CODING(SILENT|acA/acG|T303|None|Vigan.01G141200.01)Vigna nepalensis
14624474GT881674.770.49STOP_GAINED(NONSENSE|Gaa/Taa|E304*|None|Vigan.01G141200.01)Vigna nepalensis
14624485CA911429.770.48NON_SYNONYMOUS_CODING(MISSENSE|ttC/ttA|F307L|None|Vigan.01G141200.01)Vigna nepalensis
14624511GT781605.770.54NON_SYNONYMOUS_CODING(MISSENSE|cGt/cTt|R316L|None|Vigan.01G141200.01)Vigna nepalensis
14624518AG861521.770.45SYNONYMOUS_CODING(SILENT|ggA/ggG|G318|None|Vigan.01G141200.01)Vigna nepalensis
14624605GC90880.770.30INTRON(|||None|Vigan.01G141200.01)Vigna nepalensis
14624613CT87870.770.30INTRON(|||None|Vigan.01G141200.01)Vigna nepalensis
14624617GA80882.770.33INTRON(|||None|Vigan.01G141200.01)Vigna nepalensis
14624622TG79807.770.29INTRON(|||None|Vigan.01G141200.01)Vigna nepalensis
14624642GA71378.770.20INTRON(|||None|Vigan.01G141200.01)Vigna nepalensis
14624650GC71336.770.17INTRON(|||None|Vigan.01G141200.01), SPLICE_SITE_ACCEPTOR(|||None|Vigan.01G141200.01)Vigna nepalensis
14624665AG72204.770.14NON_SYNONYMOUS_CODING(MISSENSE|aAa/aGa|K338R|None|Vigan.01G141200.01)Vigna nepalensis
14625041TG501928.771.00UTR_3_PRIME(|318||None|Vigan.01G141200.01)Vigna nepalensis

Indels

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
14622320CTC501255.730.98INTRON(|||None|Vigan.01G141200.01)Vigna nepalensis
14624274CTCCTGC871362.730.41INTRON(|||None|Vigan.01G141200.01)Vigna nepalensis
14624279GGAA861323.730.42INTRON(|||None|Vigan.01G141200.01)Vigna nepalensis
14624456TGT961878.730.51INTRON(|||None|Vigan.01G141200.01)Vigna nepalensis
14624460TTCGAT961875.730.51INTRON(|||None|Vigan.01G141200.01), SPLICE_SITE_REGION(|||None|Vigan.01G141200.01)Vigna nepalensis
14624523AAGAGA811416.730.44FRAME_SHIFT(|gaagag/|EE320|None|Vigan.01G141200.01)Vigna nepalensis
14624614ACA84864.730.31INTRON(|||None|Vigan.01G141200.01)Vigna nepalensis