GBrowse Details

Vigan.01G100500.01

Basic Information:
Name: Vigan.01G100500.01
Multiple alignment
Variant Information
Position: Chr01:8503713..8506006 (- strand)
Length: 2294
Functional Information:
Description: Similar to Protein yippee-like. [V7CN42, Phaseolus vulgaris]
InterPro: Yippee/Mis18 (IPR004910)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:7.40,6.37,11.29,27.08,36.91,9.77,10.67,26.72
Automatic updates:
Name: NM_001251487 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max yippee family putative zinc-binding protein (LOC100500458), mRNA.
PubMed ID: 21667246 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr01:8503713..8503949 (- strand)
Length: 237
Type: three_prime_UTR
Position: Chr01:8503950..8504177 (- strand)
Length: 228
Type: CDS
Position: Chr01:8505449..8505541 (- strand)
Length: 93
Type: CDS
Position: Chr01:8505542..8506006 (- strand)
Length: 465
Type: five_prime_UTR

>Vigan.01G100500.01 class=Sequence position=Chr01:8503713..8506006 (- strand)
CAAAAATTAG AAATTAACAA AAATCAGATT CCGATTCATT CTTCATAGAA AAATTCAAGG CAAGGAGTTA CAACCTCTAT
CACCCTTTAT GGGGACTTAA ACGATGAATG AAATTGGGTT TATATCTTTA GTTGGTCTTA TTTTTCTGTA TTCAGGATAT
TATTATGCAT AGTGTTGCCG TTTGTTTCAC TGCTGTGGGG AACTTTTCCT TTTCTCTTTA CTTTTTTTCT CAGAATTTGC
GATTGATTCT GGCTTAATGT CTTGTTGCAG ATCTTTGGGT CATCTTTTGG TGGTTGCAGG TAAAGAAATC TGGTTACTTT
CCAGCTAACT ACCCACTTTT TTTCTCTTGG GGTTGCAGAT CTAAACCTCC TGTGTGTTCT TCTCACTCTT GCATAACTGA
GATTTTTAGT TTTGCTGTTT TGATTTTTCA GATAAACGGA GTGTTTAGTT TGCAATTTTT GACAAATGGG GGAAACGATA
GGGCCTCGCT TATACTGTTG TTGTAACTGT AGGAACCAAG TCTCCCTCCA TGACGATATA ATTGCTAAAA CCTTTCAGGT
TGGGATTTTA TTTTCGTGTA TCTTTATCGA GAATTTATAA ATTTGTGGAT ATTTGTTGAA AATGTTACTT TTTCTTGCGT
TTCATATGAT GAAATTTTAC CCATGCTTTC TCTACTGGTT AGTTTGTTTG TTATCGGTGC TGATAAAATG GTGAATTATA
AATCTCCTGG TGTATTGTGC TTTGTTTTAG TTTTTTTTTT TTTTTGAAGA AGGTAAAGTG GTGGCAGGGG TAAGATCATG
ATCATATTGT TTGATTTCTA ATGCTTGAGG TGAAAAGAAG ATATAGAAAA AGAGAAAAAG TAAAGTGCAA TGTTATAAAT
GTTGGAAGTC CAAAATTGTC TCATGTAAAC TCTTGGGGTC TATTGTGTTT TCATGGTGAG TTTCCCTTCA TGAATTGGCT
ATGGTAGTTG GCAAAACTTC CCCATGGTAG AAGTAGAAAA AGAACTGAGC GGAGAGTATG GTAGACATGA GAAAGAAGAA
AACAATTCAT AGATGATTAT AACTTTTCAT TTTGCTAACA TGAATCTTTG ACCCAGTAGA TTAGAAGCAC TTGGGAAATA
TAGTTGAAGT TAAGGTCTGT AAATGAAGGA AAACAGTGTA AGTGTGTTTT AATGTGACTG GATCCCAAAC CCAAGAATGT
AAATTTCTCA GAGGTCATTT TGGGGAGATT ATCTATGTAT ATGAAGACAT TTTAAGCTCC TTTTAAACTT CCTTAAAATA
AACTCATTTT GGCTTACAGG AATATGTTAA TGTTAACTTC ACCATGTATG CTAGAATGTT CTAAACTTAT GGACCAAGTG
ATTGTTTGAG AATGAACTCT TTTCATAAGT TAAAACTAAT GTACAAAAAT TCTGCAAAGT AGTTTATGTA GAAGTCATAA
GTATGAAAAT TTTATCTAAT TTTTCTTTCT TACTTTTGTT CTTCTAAAAG TTCTTGAAAG GAGTCATGTC AGATACTGCT
GCACATACAT GTTTAATACT TTTAACTTCA TTTTATAATT TTTAAACATG CATTTTATAA ACTTCATGTT TATACTAGTG
CTGATGAGAG TACCTTTATA ATACTATAAT TAGGTAATCT TTTTCATTTT GTTATGAGTT TATTATATCT TCCTCCCGGT
TTAAACTATT TATTTACATT ATGTTTTGAT TACTTTATAG GATGATTATA TTGTTCTGAT GTTATATGTC ATATATGTGC
TCCCTAGCTA TATGTGTTCT TTTCCCATGT CTTTATCTAA CAGTTCTTTG ATACTAATAT TTTGATTAGG GAAGGTATGG
TCGAGGTTTT CTGTTCTCTC ATGCAATGAA TATTGTGGTA GGGCCAAAAG AAGATAGACA TCTCATGACT GGCCTACATA
CTGTTGCTGA TGTTTACTGT GGAGACTGCC ATGAAGTGTT GGGTTGGAAA TATGAAAGAG CTTATGAAGC ATCACAGAAG
TACAAGGAAG GAAAATTCAT ACTTGAAAAA TCCAAAATTG TAATGGAGAA CTTTTGATTT TTCCTTAATA TATTAATCAT
CATGATGTCA TCTTAACATT ACGAGCTGTC TCAAATTTGT TAATTGTGTT CTTTAATTTC AAATGATTGG TAGTATGAGT
ACAAGTGATA TTGGAAGATA ATATGTTTAT CCTTCTCCAT AAAATTGTAT GCCAACTTGT ATATGGGATG GACAAATTCT
TTTTTACCTC AATTTTTTTC ATTTTACATC GTCTTAATAT AAAATTTGTG TTTT

>Vigan.01G100500.01
CAAAAATTAG AAATTAACAA AAATCAGATT CCGATTCATT CTTCATAGAA AAATTCAAGG CAAGGAGTTA CAACCTCTAT
CACCCTTTAT GGGGACTTAA ACGATGAATG AAATTGGGTT TATATCTTTA GTTGGTCTTA TTTTTCTGTA TTCAGGATAT
TATTATGCAT AGTGTTGCCG TTTGTTTCAC TGCTGTGGGG AACTTTTCCT TTTCTCTTTA CTTTTTTTCT CAGAATTTGC
GATTGATTCT GGCTTAATGT CTTGTTGCAG ATCTTTGGGT CATCTTTTGG TGGTTGCAGG TAAAGAAATC TGGTTACTTT
CCAGCTAACT ACCCACTTTT TTTCTCTTGG GGTTGCAGAT CTAAACCTCC TGTGTGTTCT TCTCACTCTT GCATAACTGA
GATTTTTAGT TTTGCTGTTT TGATTTTTCA GATAAACGGA GTGTTTAGTT TGCAATTTTT GACAAATGGG GGAAACGATA
GGGCCTCGCT TATACTGTTG TTGTAACTGT AGGAACCAAG TCTCCCTCCA TGACGATATA ATTGCTAAAA CCTTTCAGGG
AAGGTATGGT CGAGGTTTTC TGTTCTCTCA TGCAATGAAT ATTGTGGTAG GGCCAAAAGA AGATAGACAT CTCATGACTG
GCCTACATAC TGTTGCTGAT GTTTACTGTG GAGACTGCCA TGAAGTGTTG GGTTGGAAAT ATGAAAGAGC TTATGAAGCA
TCACAGAAGT ACAAGGAAGG AAAATTCATA CTTGAAAAAT CCAAAATTGT AATGGAGAAC TTTTGATTTT TCCTTAATAT
ATTAATCATC ATGATGTCAT CTTAACATTA CGAGCTGTCT CAAATTTGTT AATTGTGTTC TTTAATTTCA AATGATTGGT
AGTATGAGTA CAAGTGATAT TGGAAGATAA TATGTTTATC CTTCTCCATA AAATTGTATG CCAACTTGTA TATGGGATGG
ACAAATTCTT TTTTACCTCA ATTTTTTTCA TTTTACATCG TCTTAATATA AAATTTGTGT TTT

>Vigan.01G100500.01
ATGGGGGAAA CGATAGGGCC TCGCTTATAC TGTTGTTGTA ACTGTAGGAA CCAAGTCTCC CTCCATGACG ATATAATTGC
TAAAACCTTT CAGGGAAGGT ATGGTCGAGG TTTTCTGTTC TCTCATGCAA TGAATATTGT GGTAGGGCCA AAAGAAGATA
GACATCTCAT GACTGGCCTA CATACTGTTG CTGATGTTTA CTGTGGAGAC TGCCATGAAG TGTTGGGTTG GAAATATGAA
AGAGCTTATG AAGCATCACA GAAGTACAAG GAAGGAAAAT TCATACTTGA AAAATCCAAA ATTGTAATGG AGAACTTTTG
A

>Vigan.01G100500.01
MGETIGPRLY CCCNCRNQVS LHDDIIAKTF QGRYGRGFLF SHAMNIVVGP KEDRHLMTGL HTVADVYCGD CHEVLGWKYE
RAYEASQKYK EGKFILEKSK IVMENF*