GBrowse Details

Vigan.01G080300.01

Basic Information:
Name: Vigan.01G080300.01
Multiple alignment
Variant Information
Position: Chr01:6530143..6536804 (+ strand)
Length: 6662
Functional Information:
Description: Similar to uncharacterized LOC101206523. [XP_004166588.1, Cucumis sativus]
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.37,0.86,3.08,2.86,12.94,8.07,1.38,1.38
Automatic updates:
Name: NM_001250216 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100306075 (LOC100306075), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:6530143..6530290 (+ strand)
Length: 148
Type: five_prime_UTR
Position: Chr01:6530291..6530308 (+ strand)
Length: 18
Type: CDS
Position: Chr01:6531264..6531500 (+ strand)
Length: 237
Type: CDS
Position: Chr01:6536527..6536574 (+ strand)
Length: 48
Type: CDS
Position: Chr01:6536575..6536804 (+ strand)
Length: 230
Type: three_prime_UTR

>Vigan.01G080300.01 class=Sequence position=Chr01:6530143..6536804 (+ strand)
TTATAATGAA CCGCGTTGAA CAGAGAGAAA CCAAGTCAGA CACGTATAGA ACACTTGTTG CACCAAATTC TAGCCAATTA
GCAGTGCACG AAAGACTTAA CACACCGGCT ATTACTTCCA CGCCCATTTC CAGATCTCAA CAACACTCAT GGACCGTCGT
AAAGAGGTTT TTCTTTTCTC TTTCTCCAAA CTATTATTTT TCTTCGTTGC TTAACCTAAT CCTTCTCCAG TGGAATGGAT
TCTTTCTCTG TATTGTTTGC GTCTAATGTT AATATTCACT GAATAACTGC ATCTGGCTAT TAAATTGCAT GCTGCTGGTT
GAGTTGAACT GTATGAAGCT GAAACACTGA GATTGTGATT TTATGAAACT TAGTTTTGTC TGGTTTAAAT TTAGACATAC
ACAGGACGAA GATCTTGAGT ACAGATACAA TTGTTTACTT GTTTATGCTG GAATTTTTCT CTTTGCCAAA AGGCGAAACT
CTGATTTTAA TCTAAGAACT ACATGTTTTG ACCGTTTCCA GAATCCATGC TTTGTTTGTC CTCTGATTTT GTATTTAATT
TTCGTGACTA AGTAATAACT GCTATTCAAC ATTCATATGC AAAGATTGTT GTATTTCTTT GCTTTGTTTG ATTCTTTCTT
GTTTTCTCTA ATTTTTAAAT GGAGGCATGG GTACCGTGAG TCATTCGCTT CTCTTTCCAG TTCAGCTTCA CGAATCGTTT
CGTTTTAATT TTTAAACCTC AAATGGATCC GGATCACCTG TGGCTAGTTT GTTACAGGTT GTTTTTTTTG GCTTTTACTG
TTGCATTTTC TTTTATTGTT TTGTGTGTGC TTTTTCCTTT TTCAAAGGAT GAAGATTCTC TACAATTAAT TGTTTTTAGA
GAAATTTATT TTTATTAACC TATAGGGAAC CTTGATTCTT TTAAAAAGAT TATGACAGTG TTGCAGTCGT ATAAGTAATA
ATAAATTTTT TTCTAAATCT AAGAAATAGA CAAATTCTTC ACTATACAAT CCAACTCTTT CATTTGTACC AGTTTTTTTG
GTATGCTTAT TAAGCATAAA GTTGATATGA ACAGTTAATT ATTCTTATTA GTTGACTTTG TTGTAAATCT TGTGAACGTA
GAAAAATGGC ACTTGGCTAT CAGTACCACA ATTTGGAGAC TGGGATCAGA AGGGCCAAGT GCCAGACTAC TCTCTTGATT
TCTCAAAGAT AAGGGAAACT AGGAAGCAGA ACAAGACAAA CATTTCGAGG GCAAGTCTTG GTAATGAAGA AGAGTTCGAT
GATTCAACCT CGAGCAGCGC AAACACTGGT CACAGTGAGC ACTCCCAACC TCACTACCAT CAAACGGTTC CTCCAAATGT
AAGATTATCC AGAAGCTTCC CAGTTCTTTG TTTTATTTTC TTAAAAAGGA TCAATTTAAT TGTTTAAAAC AAATAAAATA
TAGTACTTGA AGATATTTTT TGCTTAAATA ATTTTATATA AAAAATGGAT TAATTTACTG TAGAAATGAG ATTTCAAGGA
CTTTTTTTAC AAAATTAGTG TAATTTTGGA GAGGAATTAC GGAAAAGGTA GATTCAAAGT TTTTATTGCT TTTCAGTATG
TTGTGTTATG GGAAAACGAC TTTAGTGGAA GAAGTTGTAC ACCATCAGCA CAATTTCAAT TGGAGTTGAA AATTGTGAGG
GAAAATCATG TCATGATAGA ACAACTTCCA ATTTTTTTTA TGCACTTTGA AGTTATTTTG GTGTAAAATG TGTTTAGAAA
AAAATTGTGC TCACACATAA TATAACGATT TTTAATTTAG AAAATAAAAT TAAAAGTTGT GCTTATGTAG CACGACTATG
TGGATAAAAT GGGAGGAAAA ACCAGTGGTT ATGTAACAAC TTATTAATCA TAAATTGTGT AAACCAAATA TAATCTGAGT
GTAGCTGGTA TTGAATAGAA GTCATGTTCT TAGGTGAAGA CTTTCATTTT TTTATCATGA AATTATAAGT AGTTTGTGAC
TAGAAAAAAA GAGTAGAATT TATCCACGAA TATAATTTTT CGAAAACAAC AAATATTTAT CAACAACTTT TGATGACTTA
TCGACAATCA AAAATTCGTT GATAATATCA TTATTGATAA CCATTATCGA TGGATATAAG TCGTTGGTAA TTATCGATAG
ATACATCCTT CGATAAATTC ATCTAAAAGA CGTAATACCA ACATTGCAAT TCGCAACCAA TTTTTAACCA AGCGGGCAAA
TCCCAACAAT AGTCACTAAC ACCAACACGA TCAATTGCAA AAATAGGATT CACCATTACT CAGAATTAAC ACCATGTTAC
CAAGAATAGG GGATCAACAG TTATCACTTT AATCACAAAC CAACTTACCT TGACGATAAC ACCTCGCAAC AGCCTCTGAC
AATGACGACA CCCTCCTTAG ACCACGGTAG GGGAAGAAAC ACAATAGAAA ACCTCCACCA AGATCCCTTA GTCAAGTTCC
CTCACACACA CAACGCACAC TCGAGCAAGA ACCCTCGAAC AAGAACCTTA CAACCTAAAA CAACAACTCT CGAACAAGAA
CCTCCCACGA CATAGCACCA GTCTCCCAAT GAAAGTGTCA ACACGATGAA CCCTCCATGA TAATCGATGA AACCCAACGT
TAAATGAGGG AACGAAGCGC TGAACCAACC TTTGCAATGG AGGATCTGCG ATTGCGATTG CGATTGCAAT TGAGACTGAG
CGAATGACAA AGATGCTGGC TGACAGAGAC GGTGGCTAAT GGAGAGGGCC TCTGGCACTT AGAATTAAGG AATGCAAAGG
GAATGTTGGG AGAAGAAGAA ATGTGAAATG AAATTTGAAC AAGAGGGAAA ACTATTTTTT CCCAAATTCC TAATCAACTT
AACTCCTATG CTTACCAACA GATCTTGTCT GTCGGTAATG AGTCATAAAA TTTACCTATG GAATCCGTCG GTAAAGACCA
TTGTCACAAG TCGTCAATAA ATCTATGAAT AAATAACAAT TATCAACGGA ACAAAAGTCG TTGGTTATGG CCCGTGGGTA
AATTCATTAG TTCTTGTAGT GTGTGCAACA TGACTTTGGC TTAAAAAGTC ATGTTGGGCT TAAATGACTT TATTGTAACT
TTTCTTATCA AAACCAAAAA AAAAATAGTA ACTAAATATT GTGGATATGG AATTATTTTA AGCAAAAATA TGTTTGATAA
GTAAATAGGA TAGGAAAAAT GATAAGAAAT GCAAAATACA ATATTTGTAA TGTGATAATA TATGATTCAA AATAATAATA
AATATTTTAA TATTAATAGA GAAAGTACTC ATATAGATGG GATTAAAGTA AATTTGATAT TAGAAAAACA AATGAGAAAT
ACAAAAGCAT GAATTTGTAT TGGCAAACCA AATTAGCTTC TTTTGATGAC CTTCGATGCT GCAATAAGAA CAATTTGTTG
ACTTATTCAG AATTGGTTAA TCTATTTCGT TATGGAATCA TGACGTGAAT GGTCTTCTAA TTGCATTATC TCATATATGA
GGGTCTGGTA TGAAATTTGG TCCTGTCCAA GTGGACCTGT AATATTCATT TGCAAAAAGG TAAAATTGGA TCTCATAAGC
CTTGTTAATG TTCTAGAGTT CGTAAACAAG ATCGATAAAT TTCGTTAGTT GTAAGTGAGA AAAAGAACAA ACGACTGTGA
CGTGATGACA AAGGATTCAA AAAGCTTGAA AATGGTCACA ATGATACCAC TAATAATTTA ATTTAACTAT ATAAGACAAT
CTAGTCTCAC TAGACGATCT TGTCTTAACA CAAAATCCGT ATAGACCACA CACCAATTTA TACATCAAAG GATATTCAAC
AAATGAAATA TCGACTAACA TCTTTCGGAA GACGAGTATT ATGTATGTCC TACCAAAGAC TAACATACGA TATCCAATAC
AAGACTTGGA TTTACAAGTA AACCCGAGAA TAACTATCAT AGTAAGTTCA TTAAAAATCA TGCCACACAT CTATATATGT
CACGATATGT AAGAATTCCC TCATTAAGTT TCTTACCACA TGATATCTTA GCCTATGTGA CTCATGTACT CAGTTAAACA
TGAAAATCTA TGTTACAACA TGTGTCAATA TTTGATACAC AACTTAAACA ATGGTTAACA CATCATTCTA GATTTATAAC
CCCAAATTCA TACAAGTTCA TCAATCTTAA TAAACATTAT CATACAATAT AATTTATTTA AACAAAACTA CAAAAATAAA
AAAATAAATA TTAAAAAAAG TATTCAATTT TGCATTTATA AAAAGATACC TAGTCAATAA ATTAAAGAGA CTAGAAGAAA
ATCACTTTTT TTTTTTAATT TGAGTGGAAA TGGGTTTATT TTAGCAAAAA TGTACCTGCT TGAGCGAAAG TTAGGCGAAT
CTAAAGGTTG AGTTGTAGTG CTATTTTTTT CATGAGCAAA AAATCTTTCG CTTAAATTAA GATATGGCTA AGAGTAATTT
TCAACTCTAT TTTGGCCCAA GCAAAAATAG GACTGAAGAA TTAGATATGA ATCTCTATTC TATTTTCACT TAAGTGAAAA
TTGGACTTTC TTAAGTGAAA GTTAGGCAAA TCTAGAGGTT TAGTTGCAAT CCTATTTTTT CTTGAGCAAA AGATCCTTCA
CTTGAGTGAA AATATGGCTA AGAGCAATTT TCAACTTTAT TTTTGCTCAA GCAAAAATAG TACCGAGAGT TTGGTTTGAA
TCTATGTTTT ATTTTTGCTT GAGTGAAAAT TCTCTACTCA AGTGAAAGTA TTAGAAAATT CAAGTGAAAG TATTAGAAAA
TTCAACGTCA GCATGAAAAT CAAATCATTT TTCAAATATT TTTTCATAAA CATTTTAATA ATACAACTTC AATAAAATTC
AAATGTTGAA TAAAAAAACA TGATTTGTTA TCATCTTTAC TTATTTGAAA TCAACCTTAG ATCCTTAACT TAAACTTTAC
ATATTTATAC TCACATCAAA TTCATAATAT ATTATAAGGA TAGTTATAGA ATTTTACTCT ACTTGTCTAA ATCATTTTCA
AAACTCGATT TAATAAGAAT TTATTCTTAA CATGCATAAT TTGATACTAA ATCAACTTAT TAATAAGAAT ATTCAATTTT
AAACATTTTA AACAATCACA TATAAAATGA AATCTAATAA GACTTTCTTC AAACCTTCAA ACAAATTTTC AATTAACCAC
AGTCTTTATA TAAAATTGAA GTGACATGTC CTCTTCACAT ATATATATAT ATATATATAT ATATATATAT ATATATATAT
ATATATATAT ATATATATAT ATATATATAT ATATATATAT ATATATATAT ATATATATAT ATAGATCGTT TATCTTAAGG
TTCTATAAAA AAATATAAAT AACTCTCCTT ATTTACAATA TTCATCTTCT AAGCAATTTT TTAAAGTCCA AATAATAATA
ATACTTTTCT AAAATCTAAT GATCTAGAAT AAAGTATTCA AAGATAACAC AATTTTAGCA TATGCTCAAG TAAGTTGAGA
GAATATTTTT TAATTGACTT CACCAAAATT GATTAAAAAA TCATAATAAA AATGAAAAGA AGAAGAAGAA GATGAAACAG
AGAAAAACAA AGTTTAGAAT TGATCTTTAG TTCCATAACT ACTATGAGAT GAAAAAAAAT TTTAAAAAAA TGAAGATTGA
AAACAAAAGT TTAGAGAGAG AAAATGAAGT GAAAAAGAGA AAGGAAAAAA AGAAAAAGAA TTGCGATAAG AGAAAATGAG
TGTCACATTA AGTCATGTCA TTAAGCTTTA GTTTTTCCTC TCTATTTTAT TTTATTGAAT TAAAGCTATG TAATTTATTC
TTTTTATCAA TGTTTTTTAT ATCATTCTTA GTTGACGCGT TAATCAATTT ATGAAAGAAT ACTATACTAT AAAATAAATT
ACAAATAATA TAACTCAAAA TGTAATTAAA GAGTTTGTTA ATGAACATAT ATATTTTAAG TAATATTATT CTAAATCAGT
TTTCCTGCAT CACAATTTTA TAATCTCTAT TTAAATTTTA TCATTTTGCC CATCTTATTA AAAATGTATA AAAGAATATA
GTACAAAAGA AAAAGAAAAC ATAATATATA TTGTGAAGTT TTAATAGAAC GTGCTGCATA TCACAGTTTT TAATACAATT
TTTTAAAATA TTTCTTTTAT TAATTAAAAT TTATTAAAAA TATAAAAATT TAGTTTGTTT CACAGTTTTT TTCTAATGAT
GACTTTTTAA TAATTATGTA ACTTTTAATA ATTTTGATTA ATTAAAAAGA GTGTGTTCCA AACTGTCTTT TCCACACTCC
TAGTAGTGTA ACAATGTCAT GTATATGTAT GACAGACATT TATTTATGTA TTTTTTTTTT ACAGGCAAGG AAGAGCTTCT
TCAGCTACTT CAGTTGTTGT GTGAAAGCCT AAAATTAATT TGAGGGCAAT TGTTTTCAGA CGATTCTGGA TAGGAACATT
TATGCTTTGT TCGTTTGGTG ATCTTCATTT CAAAACAAAT ATTTCTTTTT CAGTTCTAAT CTTCCTGTCG TGATTAGGCA
ATCGTAGCTC AAAATTCGGT TAAATCCTCT TGGGATTATT TTAGGGTATT AAGAGATACA CCGTAAAACT CATTACCAAT
AGATAAGAAT TATTACACTC AA

>Vigan.01G080300.01
TTATAATGAA CCGCGTTGAA CAGAGAGAAA CCAAGTCAGA CACGTATAGA ACACTTGTTG CACCAAATTC TAGCCAATTA
GCAGTGCACG AAAGACTTAA CACACCGGCT ATTACTTCCA CGCCCATTTC CAGATCTCAA CAACACTCAT GGACCGTCGT
AAAGAGAAAA ATGGCACTTG GCTATCAGTA CCACAATTTG GAGACTGGGA TCAGAAGGGC CAAGTGCCAG ACTACTCTCT
TGATTTCTCA AAGATAAGGG AAACTAGGAA GCAGAACAAG ACAAACATTT CGAGGGCAAG TCTTGGTAAT GAAGAAGAGT
TCGATGATTC AACCTCGAGC AGCGCAAACA CTGGTCACAG TGAGCACTCC CAACCTCACT ACCATCAAAC GGTTCCTCCA
AATGCAAGGA AGAGCTTCTT CAGCTACTTC AGTTGTTGTG TGAAAGCCTA AAATTAATTT GAGGGCAATT GTTTTCAGAC
GATTCTGGAT AGGAACATTT ATGCTTTGTT CGTTTGGTGA TCTTCATTTC AAAACAAATA TTTCTTTTTC AGTTCTAATC
TTCCTGTCGT GATTAGGCAA TCGTAGCTCA AAATTCGGTT AAATCCTCTT GGGATTATTT TAGGGTATTA AGAGATACAC
CGTAAAACTC ATTACCAATA GATAAGAATT ATTACACTCA A

>Vigan.01G080300.01
ATGGACCGTC GTAAAGAGAA AAATGGCACT TGGCTATCAG TACCACAATT TGGAGACTGG GATCAGAAGG GCCAAGTGCC
AGACTACTCT CTTGATTTCT CAAAGATAAG GGAAACTAGG AAGCAGAACA AGACAAACAT TTCGAGGGCA AGTCTTGGTA
ATGAAGAAGA GTTCGATGAT TCAACCTCGA GCAGCGCAAA CACTGGTCAC AGTGAGCACT CCCAACCTCA CTACCATCAA
ACGGTTCCTC CAAATGCAAG GAAGAGCTTC TTCAGCTACT TCAGTTGTTG TGTGAAAGCC TAA

>Vigan.01G080300.01
MDRRKEKNGT WLSVPQFGDW DQKGQVPDYS LDFSKIRETR KQNKTNISRA SLGNEEEFDD STSSSANTGH SEHSQPHYHQ
TVPPNARKSF FSYFSCCVKA *