GBrowse Details

Vigan.01G051200.01

Basic Information:
Name: Vigan.01G051200.01
Multiple alignment
Variant Information
Position: Chr01:3855133..3858008 (+ strand)
Length: 2876
Functional Information:
Description: Similar to Uncharacterized protein. [I1K6H0, Glycine max]
GO: Molecular Function: acid-amino acid ligase activity (GO:0016881)
InterPro: Ubiquitin-conjugating enzyme, E2 (IPR000608)
Ubiquitin-conjugating enzyme/RWD-like (IPR016135)
Ubiquitin-conjugating enzyme, active site (IPR023313)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:6.46,12.39,17.35,8.36,36.18,29.53,29.31,18.72
Arabidopsis thaliana homolog: AT1G63800.1
Automatic updates:
Name: NM_001249999 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100527756 (LOC100527756), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:3855133..3855302 (+ strand)
Length: 170
Type: five_prime_UTR
Position: Chr01:3855303..3855346 (+ strand)
Length: 44
Type: CDS
Position: Chr01:3855470..3855549 (+ strand)
Length: 80
Type: CDS
Position: Chr01:3855891..3856005 (+ strand)
Length: 115
Type: CDS
Position: Chr01:3856159..3856211 (+ strand)
Length: 53
Type: CDS
Position: Chr01:3856325..3856453 (+ strand)
Length: 129
Type: CDS
Position: Chr01:3857679..3857812 (+ strand)
Length: 134
Type: CDS
Position: Chr01:3857813..3858008 (+ strand)
Length: 196
Type: three_prime_UTR

>Vigan.01G051200.01 class=Sequence position=Chr01:3855133..3858008 (+ strand)
CAAACTTTCA GTTTTTTTTT GTTTGTTTGT TTGGGTTTGA GCCTTTTTTT ATTTGTGGAA CATGAAGTAA ACAGTTTCAG
CCTTTCTTCT TGTATGTGTA CCTTTGATTC CACAGAGCTT CGCAGCAGCA GAATCGCACA AACAACAAGA GTCAAACGCA
GAGAGAAACA ATGTCTTCTC CTAGCAAACG CAGGGACATG GACCTGATGA AACTGTCTGT TATATTTTCA AAGTTTTTAT
TTTTATTTCT TTTAATTTCA GAAACTGTTC TTTTTGCATA AATTTCTTGT CTTTTTCCAT TTGGGGTGTG TTTGATTGAC
ATGGATCAGG TCATCAGGAT GATGAGGGAC TACAAGGTGG AGATGATCAA CGATGGCATG CAAGAATTCT TTGTGGAATT
CCACGGACCT AAAGATAGTA AATTTTTGCA TCCTTTGCGT TGTTATTTTA CTTTTTATTT TTTATTTTGT TGTTCAGTTC
CTCCTCTGAT TATTGAGATT ATCTTTTTTT TTTTGGCCCA ACTTTGTCTC CATTGAAATT GAAATTTCTT CCTTCACCGA
CTGTCTTTGA ATTCAATGTG AAGTGTTTGG ATCAGCAGTC AATAGCTTAG ACTAATGTGG TTGATTCATT GTTTGGCTAT
TTTATTCAAT GAGGATTAAT TGCACTAGGA TCTATGTTTA ACTTCAAAGG TGGAAGTGAA TTGTTGTTTT TTTTTTCTCT
GTTTTTTTTT TTTTCACTTT AATGGGAATC ATGTGCAGGT CTGTATGAGG TTGGTGTGTG GAAGGTAAGG GTGGAGCTAC
CTGATGCTTA TCCTTATAAG TCTCCATCTA TTGGCTTTGT CAATAAAATT TTTCATCCTA ATGTTGATGA ATTGTAAGTT
GTTCCACTGC AACCATAACT TCATTAAATC ATAGTTTATA TCTTATTTAA GCAGCACCAC TGAACTCAAT GGAAAGTCTA
TTGGCTGTTG CACAAACACA TTGCAAAACT CAGTAGCTAA TTTATACAGT TTCCTCTAAT GCTTAGGTCT GGTTCTGTAT
GCTTAGATGT TATTAACCAG ACTTGGAGTC CCATGTTTGG TAAGCAATGT TTCAAGAATT TTATTATATG CATACTTGCT
ATGCATTTGA TTCTGCCTTG CTTTGTTACT GCCACTACTT AAAATTTGGT GATTTTCCTT ATTTCTTTTC AGACCTTGTT
AATGTGTTTG AGGTGTTTCT TCCTCAACTT CTTCTGTATC CCAATGCATC AGATCCATTA AATGGTGATG CTGCTGCCTT
GATGATCCGA GATCATGCTA CATATGAACA AAGAGTCAAA GGTGGTAATC CTTTCTGTTG TATAAATCTG TAATGCTTCT
GTCATGCGTA GGTAATTCAT GTTAATAGTA AGAGGGTTCC TGCATTATTG TTAACAATAA CTACAGGCAT CTTTATTTTT
ATCGAATTTG AATTGGAGTG AAAAATCATT AAGTGGTTAA TAGTTATTAA TAAAAAGCTT TGAAGATTCA AGTTTGTACA
AAAGAATCTG TCATTTTTTG CACAAACTGA TATTGAACAC AAATCCTTAC CACAACAATT GCAAATGTTT AGTAATATCA
TTATTAAGTA CAACAATTGA AATCTCCTTT TGTGCCAAAG GATTTGTTCG ATTTAAAGCA CAAGTGTCAA TGCTCCCCAA
CAGTTTTAGA ATATGTTCTC ACTTGCCAAT GAGCATTCCA GCAGCTAGTC ACTTATCTTT AATATGCTAA TCAAAGCTTG
CAGTTTGGAA GCTTTGGCAT CATTCTTTCT TTTTGCTTCT AGGGAATTTG AACATCTTAG TATCATTACC TGCTTGCATC
CTATTCTGAT ATTTGCTTTG GCATTGATCA ATCCTACTCT GTAATGATAA TAAAAAGTGT ATATTGAGTG TGTAAAAGAA
GAGTTTTTGA ATTCCAATAC TCAAATGGTA ATATAGGCCT CATGATTTCA TGGTATAATG TTGAATAGTT TGCTTGTAAC
TGAGCTAATA TAAAGTATTT AACATACTCG ACCATTTTCA AGCTGAGTTA CTGATCAAAG CAAGTACTTT CCAATTTACT
GTCATACAAC TTCTATTATT GTTTGTATCA ATTGAATCTT AGATCCTATA TCTCCGGCCA GGTTTGGTAT AGCGAGAAAT
AATTGCTTAT TATAATAAAT ATTCTGAAAA AAAATTACAA AAATGGTGAT TATTTCCTTA TAAAATGTTG AACCAATGTT
TTTGTTTTGT CATTCTTTTA AACTTTACTT TCTAATTTGG TATGTCAAAT TGGTATACCA TTTGTTTTGT CATCCTTGGC
ATTTTTTGAT CATTGAAGAA AATCGCACTT ATGTGAGTAT CTAGATATTG TATCATGGTC ACAGAAATCT AGATATTCCA
GTGTATTTAA TTCTATGATT TCATGTGAGA CAGTAGTTTA AAGACTGACA AGGGAAACAT TTTAATGTCT ACCATATGTG
AATATGTTAT TATATTCTAA GCAAGTGCTT TTGTTTACAA TTTTCATTTT TTGAGGCAAT GAACAGAATA TTGTGAGAAA
TATGCGAAGC CAGAAGACAT TGGAGCTGCA GAGGAGAAAG ATTCTAGCGA GGATGAGCTG AGTGAAGATG GTTATGCCTC
TAGTGATGAT GATGGCATTG TCGGGCAACC AGATCCTTAG ATTTTTACAT ATAATGCCTG TCTTATTTGA TTGTACATGA
TATCATATGA TTTTATATCG AGTCCAAGAA TAGGTTAAAG AGACAAAGTT CTTATGGTTG AAGGAAAACT ACACACCTTT
CTATCTGTTC CATGGTGGTT GTGTGTAAAT TGGTTTATGA TTTAGGTGTT TAAGGTATTC AGTTATGTGA CTAGAA

>Vigan.01G051200.01
CAAACTTTCA GTTTTTTTTT GTTTGTTTGT TTGGGTTTGA GCCTTTTTTT ATTTGTGGAA CATGAAGTAA ACAGTTTCAG
CCTTTCTTCT TGTATGTGTA CCTTTGATTC CACAGAGCTT CGCAGCAGCA GAATCGCACA AACAACAAGA GTCAAACGCA
GAGAGAAACA ATGTCTTCTC CTAGCAAACG CAGGGACATG GACCTGATGA AACTGATGAT GAGGGACTAC AAGGTGGAGA
TGATCAACGA TGGCATGCAA GAATTCTTTG TGGAATTCCA CGGACCTAAA GATAGTCTGT ATGAGGTTGG TGTGTGGAAG
GTAAGGGTGG AGCTACCTGA TGCTTATCCT TATAAGTCTC CATCTATTGG CTTTGTCAAT AAAATTTTTC ATCCTAATGT
TGATGAATTG TCTGGTTCTG TATGCTTAGA TGTTATTAAC CAGACTTGGA GTCCCATGTT TGACCTTGTT AATGTGTTTG
AGGTGTTTCT TCCTCAACTT CTTCTGTATC CCAATGCATC AGATCCATTA AATGGTGATG CTGCTGCCTT GATGATCCGA
GATCATGCTA CATATGAACA AAGAGTCAAA GAATATTGTG AGAAATATGC GAAGCCAGAA GACATTGGAG CTGCAGAGGA
GAAAGATTCT AGCGAGGATG AGCTGAGTGA AGATGGTTAT GCCTCTAGTG ATGATGATGG CATTGTCGGG CAACCAGATC
CTTAGATTTT TACATATAAT GCCTGTCTTA TTTGATTGTA CATGATATCA TATGATTTTA TATCGAGTCC AAGAATAGGT
TAAAGAGACA AAGTTCTTAT GGTTGAAGGA AAACTACACA CCTTTCTATC TGTTCCATGG TGGTTGTGTG TAAATTGGTT
TATGATTTAG GTGTTTAAGG TATTCAGTTA TGTGACTAGA A

>Vigan.01G051200.01
ATGTCTTCTC CTAGCAAACG CAGGGACATG GACCTGATGA AACTGATGAT GAGGGACTAC AAGGTGGAGA TGATCAACGA
TGGCATGCAA GAATTCTTTG TGGAATTCCA CGGACCTAAA GATAGTCTGT ATGAGGTTGG TGTGTGGAAG GTAAGGGTGG
AGCTACCTGA TGCTTATCCT TATAAGTCTC CATCTATTGG CTTTGTCAAT AAAATTTTTC ATCCTAATGT TGATGAATTG
TCTGGTTCTG TATGCTTAGA TGTTATTAAC CAGACTTGGA GTCCCATGTT TGACCTTGTT AATGTGTTTG AGGTGTTTCT
TCCTCAACTT CTTCTGTATC CCAATGCATC AGATCCATTA AATGGTGATG CTGCTGCCTT GATGATCCGA GATCATGCTA
CATATGAACA AAGAGTCAAA GAATATTGTG AGAAATATGC GAAGCCAGAA GACATTGGAG CTGCAGAGGA GAAAGATTCT
AGCGAGGATG AGCTGAGTGA AGATGGTTAT GCCTCTAGTG ATGATGATGG CATTGTCGGG CAACCAGATC CTTAG

>Vigan.01G051200.01
MSSPSKRRDM DLMKLMMRDY KVEMINDGMQ EFFVEFHGPK DSLYEVGVWK VRVELPDAYP YKSPSIGFVN KIFHPNVDEL
SGSVCLDVIN QTWSPMFDLV NVFEVFLPQL LLYPNASDPL NGDAAALMIR DHATYEQRVK EYCEKYAKPE DIGAAEEKDS
SEDELSEDGY ASSDDDGIVG QPDP*