Variant information

Chr09:34765662 - 34769960

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 [SNPs] [SSR-associated indels]

SNPs

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
34765708TA471781.771.00UTR_5_PRIME(|137||None|Vigan.09G201000.01)Vigna nepalensis
34766169AC572217.771.00INTRON(|||None|Vigan.09G201000.01)Vigna nepalensis
34766198AG511853.771.00INTRON(|||None|Vigan.09G201000.01)Vigna nepalensis
34766253TC532150.771.00INTRON(|||None|Vigan.09G201000.01)Vigna nepalensis
34766581CG632459.771.00SYNONYMOUS_CODING(SILENT|cgC/cgG|R169|None|Vigan.09G201000.01)Vigna nepalensis
34766668AG592396.771.00INTRON(|||None|Vigan.09G201000.01)Vigna nepalensis
34766786CA582350.771.00SYNONYMOUS_CODING(SILENT|cgC/cgA|R205|None|Vigan.09G201000.01)Vigna nepalensis
34766970AT612473.771.00INTRON(|||None|Vigan.09G201000.01)Vigna nepalensis
34767074AG501902.771.00INTRON(|||None|Vigan.09G201000.01)Vigna nepalensis
34767111AT642509.771.00INTRON(|||None|Vigan.09G201000.01)Vigna nepalensis
34767186AG632802.771.00INTRON(|||None|Vigan.09G201000.01)Vigna nepalensis
34767196CT612765.771.00INTRON(|||None|Vigan.09G201000.01)Vigna nepalensis
34767222GT592420.771.00INTRON(|||None|Vigan.09G201000.01)Vigna nepalensis
34767256CG642617.771.00INTRON(|||None|Vigan.09G201000.01)Vigna nepalensis
34767296GC622391.771.00INTRON(|||None|Vigan.09G201000.01)Vigna nepalensis
34767396GA522027.771.00INTRON(|||None|Vigan.09G201000.01), SPLICE_SITE_REGION(|||None|Vigan.09G201000.01)Vigna nepalensis
34767585TG743028.771.00SYNONYMOUS_CODING(SILENT|gtT/gtG|V316|None|Vigan.09G201000.01)Vigna nepalensis
34767618CT692826.771.00SYNONYMOUS_CODING(SILENT|ccC/ccT|P327|None|Vigan.09G201000.01)Vigna nepalensis
34767770GC522181.771.00INTRON(|||None|Vigan.09G201000.01)Vigna nepalensis
34767940TA532112.771.00INTRON(|||None|Vigan.09G201000.01)Vigna nepalensis
34769031AT612646.771.00INTRON(|||None|Vigan.09G201000.01)Vigna nepalensis
34769047AG592591.771.00NON_SYNONYMOUS_CODING(MISSENSE|Aag/Gag|K621E|None|Vigan.09G201000.01)Vigna nepalensis
34769130TC612487.771.00SYNONYMOUS_CODING(SILENT|acT/acC|T648|None|Vigan.09G201000.01)Vigna nepalensis
34769367TA582292.771.00SYNONYMOUS_CODING(SILENT|ccT/ccA|P727|None|Vigan.09G201000.01)Vigna nepalensis
34769442TC582325.771.00SYNONYMOUS_CODING(SILENT|gcT/gcC|A752|None|Vigan.09G201000.01)Vigna nepalensis
34769929TC652776.771.00UPSTREAM(|4669||None|Vigan.09G201100.01), UTR_3_PRIME(|139||None|Vigan.09G201000.01)Vigna nepalensis
34769952GA532434.771.00UPSTREAM(|4646||None|Vigan.09G201100.01), UTR_3_PRIME(|162||None|Vigan.09G201000.01)Vigna nepalensis

SSR-associated indels

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
34765809(GTT)7(GTT)4562457.731.00UTR_5_PRIME(|27||None|Vigan.09G201000.01)Vigna nepalensis