Variant information

Chr09:30743606 - 30745804

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 [SNPs] [Indels] [SSR-associated indels]

SNPs

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
30743616GC612444.771.00DOWNSTREAM(|623||None|Vigan.09G165600.01), UTR_5_PRIME(|266||None|Vigan.09G165700.01)Vigna nepalensis
30744052GA712826.770.99DOWNSTREAM(|1059||None|Vigan.09G165600.01), INTRON(|||None|Vigan.09G165700.01)Vigna nepalensis
30744695TC582339.771.00DOWNSTREAM(|1702||None|Vigan.09G165600.01), INTRON(|||None|Vigan.09G165700.01)Vigna nepalensis
30744744TC612362.771.00DOWNSTREAM(|1751||None|Vigan.09G165600.01), INTRON(|||None|Vigan.09G165700.01)Vigna nepalensis
30744761TC592626.771.00DOWNSTREAM(|1768||None|Vigan.09G165600.01), INTRON(|||None|Vigan.09G165700.01)Vigna nepalensis
30744766TC602658.771.00DOWNSTREAM(|1773||None|Vigan.09G165600.01), INTRON(|||None|Vigan.09G165700.01)Vigna nepalensis
30744767CT602658.771.00DOWNSTREAM(|1774||None|Vigan.09G165600.01), INTRON(|||None|Vigan.09G165700.01)Vigna nepalensis
30745563AT451799.771.00DOWNSTREAM(|2570||None|Vigan.09G165600.01), SYNONYMOUS_CODING(SILENT|atA/atT|I195|None|Vigan.09G165700.01)Vigna nepalensis
30745729CT441760.771.00DOWNSTREAM(|2736||None|Vigan.09G165600.01), UTR_3_PRIME(|106||None|Vigan.09G165700.01)Vigna nepalensis
30745773AT442024.771.00DOWNSTREAM(|2780||None|Vigan.09G165600.01), UTR_3_PRIME(|150||None|Vigan.09G165700.01)Vigna nepalensis
30745783GA492187.771.00DOWNSTREAM(|2790||None|Vigan.09G165600.01), UTR_3_PRIME(|160||None|Vigan.09G165700.01)Vigna nepalensis

Indels

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
30743792GGAA411551.731.00DOWNSTREAM(|800||None|Vigan.09G165600.01), UTR_5_PRIME(|89||None|Vigan.09G165700.01)Vigna nepalensis
30744811ACCTTGTGTA662899.731.00DOWNSTREAM(|1819||None|Vigan.09G165600.01), INTRON(|||None|Vigan.09G165700.01)Vigna nepalensis
30744883GTAATG622737.731.00DOWNSTREAM(|1891||None|Vigan.09G165600.01), INTRON(|||None|Vigan.09G165700.01)Vigna nepalensis
30745653GCG471864.731.00DOWNSTREAM(|2661||None|Vigan.09G165600.01), UTR_3_PRIME(|31||None|Vigan.09G165700.01)Vigna nepalensis

SSR-associated indels

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
30743995(TCA)7(TCA)6502092.730.98CODON_DELETION(|tca/|S39|None|Vigan.09G165700.01), DOWNSTREAM(|1003||None|Vigan.09G165600.01)Vigna nepalensis