Chr07:15563948 - 15579734
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[SNPs] [Indels] |
SNPs
Position | Ref. | Alt. | Depth | Score | Freq. Of Alt. | Effect | Species | |
---|---|---|---|---|---|---|---|---|
15563980 | G | T | 67 | 2359.77 | 1.00 | UTR_5_PRIME( | Vigna nepalensis | |
15564523 | T | A | 61 | 2691.77 | 1.00 | INTRON( | Vigna nepalensis | |
15564524 | A | T | 61 | 2691.77 | 1.00 | INTRON( | Vigna nepalensis | |
15564742 | A | C | 61 | 2443.77 | 1.00 | INTRON( | Vigna nepalensis | |
15564758 | G | T | 57 | 2169.77 | 1.00 | INTRON( | Vigna nepalensis | |
15564843 | C | G | 47 | 1858.77 | 1.00 | INTRON( | Vigna nepalensis | |
15564914 | C | A | 50 | 2216.77 | 1.00 | INTRON( | Vigna nepalensis | |
15565301 | C | T | 43 | 1760.77 | 1.00 | INTRON( | Vigna nepalensis | |
15565488 | G | A | 52 | 2059.77 | 1.00 | INTRON( | Vigna nepalensis | |
15565582 | C | G | 61 | 2470.77 | 1.00 | INTRON( | Vigna nepalensis | |
15565695 | A | C | 43 | 1784.77 | 1.00 | INTRON( | Vigna nepalensis | |
15565907 | C | T | 39 | 1492.77 | 1.00 | INTRON( | Vigna nepalensis | |
15565941 | G | A | 24 | 1051.77 | 1.00 | INTRON( | Vigna nepalensis | |
15565946 | A | C | 27 | 1276.77 | 1.00 | INTRON( | Vigna nepalensis | |
15565947 | T | A | 28 | 1276.77 | 1.00 | INTRON( | Vigna nepalensis | |
15565956 | T | C | 30 | 1366.77 | 1.00 | INTRON( | Vigna nepalensis | |
15565971 | T | C | 28 | 1298.77 | 1.00 | INTRON( | Vigna nepalensis | |
15566002 | C | G | 25 | 1126.77 | 1.00 | INTRON( | Vigna nepalensis | |
15566025 | T | A | 28 | 1231.77 | 1.00 | INTRON( | Vigna nepalensis | |
15566042 | T | C | 27 | 1231.77 | 1.00 | INTRON( | Vigna nepalensis | |
15566060 | C | G | 21 | 961.77 | 1.00 | INTRON( | Vigna nepalensis | |
15566071 | C | T | 21 | 899.77 | 1.00 | INTRON( | Vigna nepalensis | |
15566584 | G | A | 21 | 295.77 | 0.52 | INTRON( | Vigna nepalensis | |
15566736 | G | A | 36 | 572.77 | 0.47 | INTRON( | Vigna nepalensis | |
15566824 | A | T | 33 | 1262.77 | 1.00 | INTRON( | Vigna nepalensis | |
15567397 | A | G | 8 | 331.78 | 1.00 | INTRON( | Vigna nepalensis | |
15567412 | T | C | 14 | 601.77 | 1.00 | INTRON( | Vigna nepalensis | |
15567416 | T | C | 14 | 646.77 | 1.00 | INTRON( | Vigna nepalensis | |
15567421 | T | C | 15 | 646.77 | 1.00 | INTRON( | Vigna nepalensis | |
15567441 | T | G | 16 | 691.77 | 1.00 | INTRON( | Vigna nepalensis | |
15567464 | G | A | 23 | 1006.77 | 1.00 | INTRON( | Vigna nepalensis | |
15567486 | A | G | 26 | 1276.77 | 1.00 | INTRON( | Vigna nepalensis | |
15567511 | A | G | 24 | 1135.77 | 1.00 | INTRON( | Vigna nepalensis | |
15567570 | C | T | 37 | 1557.77 | 1.00 | INTRON( | Vigna nepalensis | |
15567589 | T | G | 31 | 1498.77 | 1.00 | INTRON( | Vigna nepalensis | |
15567655 | A | C | 43 | 1925.77 | 1.00 | INTRON( | Vigna nepalensis | |
15567667 | C | T | 43 | 1860.77 | 1.00 | INTRON( | Vigna nepalensis | |
15567768 | T | C | 46 | 1771.77 | 1.00 | INTRON( | Vigna nepalensis | |
15567794 | T | C | 46 | 1736.77 | 1.00 | INTRON( | Vigna nepalensis | |
15567829 | A | G | 40 | 1545.77 | 1.00 | INTRON( | Vigna nepalensis | |
15567863 | T | C | 45 | 1761.77 | 0.98 | INTRON( | Vigna nepalensis | |
15567926 | G | A | 47 | 1765.77 | 0.91 | INTRON( | Vigna nepalensis | |
15567932 | C | G | 49 | 2160.77 | 1.00 | INTRON( | Vigna nepalensis | |
15567960 | G | A | 40 | 1395.77 | 0.90 | INTRON( | Vigna nepalensis | |
15567972 | T | C | 37 | 1700.77 | 1.00 | INTRON( | Vigna nepalensis | |
15567978 | A | G | 34 | 1591.77 | 1.00 | INTRON( | Vigna nepalensis | |
15567979 | G | C | 33 | 1366.9 | 0.94 | INTRON( | Vigna nepalensis | |
15568010 | C | T | 24 | 1042.77 | 1.00 | INTRON( | Vigna nepalensis | |
15568011 | T | C | 24 | 1042.77 | 1.00 | INTRON( | Vigna nepalensis | |
15568249 | T | C | 23 | 998.77 | 1.00 | INTRON( | Vigna nepalensis | |
15568258 | C | T | 23 | 996.77 | 1.00 | INTRON( | Vigna nepalensis | |
15568423 | A | G | 27 | 991.77 | 1.00 | INTRON( | Vigna nepalensis | |
15568449 | T | C | 23 | 1011.77 | 1.00 | INTRON( | Vigna nepalensis | |
15568466 | A | G | 23 | 1038.77 | 1.00 | INTRON( | Vigna nepalensis | |
15568472 | T | C | 22 | 1044.77 | 1.00 | INTRON( | Vigna nepalensis | |
15568473 | A | G | 23 | 999.77 | 1.00 | INTRON( | Vigna nepalensis | |
15568507 | G | A | 26 | 1038.77 | 1.00 | INTRON( | Vigna nepalensis | |
15568551 | T | C | 39 | 1742.77 | 1.00 | INTRON( | Vigna nepalensis | |
15568574 | C | T | 35 | 1626.77 | 1.00 | INTRON( | Vigna nepalensis | |
15568582 | T | C | 32 | 1485.77 | 1.00 | INTRON( | Vigna nepalensis | |
15568656 | T | C | 33 | 1534.77 | 1.00 | INTRON( | Vigna nepalensis | |
15568678 | T | G | 44 | 1951.77 | 1.00 | INTRON( | Vigna nepalensis | |
15568683 | T | C | 43 | 1996.77 | 1.00 | INTRON( | Vigna nepalensis | |
15568706 | G | T | 46 | 2041.77 | 1.00 | INTRON( | Vigna nepalensis | |
15568718 | G | A | 46 | 2064.77 | 1.00 | INTRON( | Vigna nepalensis | |
15568787 | A | G | 33 | 1487.77 | 1.00 | INTRON( | Vigna nepalensis | |
15568808 | C | G | 31 | 1339.77 | 1.00 | INTRON( | Vigna nepalensis | |
15568841 | C | G | 33 | 1273.77 | 1.00 | INTRON( | Vigna nepalensis | |
15569150 | T | A | 11 | 265.77 | 0.73 | INTRON( | Vigna nepalensis | |
15569179 | C | G, A | 11 | 870.77 | 1.00 | INTRON( | Vigna nepalensis | |
15569209 | G | C | 37 | 124.77 | 0.22 | INTRON( | Vigna nepalensis | |
15569286 | C | T | 34 | 72.77 | 0.21 | INTRON( | Vigna nepalensis | |
15569355 | C | T | 63 | 550.77 | 0.35 | INTRON( | Vigna nepalensis | |
15569404 | G | C | 84 | 1580.77 | 0.71 | INTRON( | Vigna nepalensis | |
15569423 | C | T | 89 | 646.77 | 0.35 | INTRON( | Vigna nepalensis | |
15569436 | G | A | 97 | 2660.77 | 0.72 | INTRON( | Vigna nepalensis | |
15569443 | G | A | 95 | 482.77 | 0.25 | INTRON( | Vigna nepalensis | |
15569535 | C | T | 66 | 162.77 | 0.15 | INTRON( | Vigna nepalensis | |
15569696 | C | T | 41 | 471.77 | 0.49 | INTRON( | Vigna nepalensis | |
15570795 | C | T | 28 | 111.77 | 0.25 | INTRON( | Vigna nepalensis | |
15570796 | G | A | 28 | 254.77 | 0.36 | INTRON( | Vigna nepalensis | |
15570857 | T | C | 36 | 105.77 | 0.22 | INTRON( | Vigna nepalensis | |
15570893 | C | T | 36 | 741.77 | 0.67 | INTRON( | Vigna nepalensis | |
15570930 | C | T | 59 | 444.77 | 0.32 | INTRON( | Vigna nepalensis | |
15571020 | C | T | 62 | 817.77 | 0.37 | INTRON( | Vigna nepalensis | |
15571022 | C | T | 62 | 817.77 | 0.37 | INTRON( | Vigna nepalensis | |
15571055 | T | A | 50 | 1858.77 | 0.98 | INTRON( | Vigna nepalensis | |
15571068 | T | C | 56 | 499.77 | 0.34 | INTRON( | Vigna nepalensis | |
15571096 | C | T | 70 | 2651.77 | 1.00 | INTRON( | Vigna nepalensis | |
15571140 | C | G, A | 57 | 2930.77 | 1.00 | INTRON( | Vigna nepalensis | |
15571189 | G | T | 57 | 434.77 | 0.26 | INTRON( | Vigna nepalensis | |
15571230 | C | T | 23 | 238.77 | 0.35 | INTRON( | Vigna nepalensis | |
15571238 | G | A | 15 | 615.77 | 1.00 | INTRON( | Vigna nepalensis | |
15571239 | T | C | 13 | 188.77 | 0.31 | INTRON( | Vigna nepalensis | |
15571423 | A | T | 11 | 370.77 | 1.00 | INTRON( | Vigna nepalensis | |
15571692 | C | G | 63 | 2468.77 | 1.00 | INTRON( | Vigna nepalensis | |
15571738 | A | G | 58 | 2359.77 | 1.00 | INTRON( | Vigna nepalensis | |
15571831 | A | T | 59 | 2306.77 | 1.00 | INTRON( | Vigna nepalensis | |
15571914 | G | A | 50 | 1938.77 | 1.00 | INTRON( | Vigna nepalensis | |
15571968 | C | T | 66 | 2659.77 | 1.00 | INTRON( | Vigna nepalensis | |
15572003 | T | C | 67 | 2697.77 | 1.00 | INTRON( | Vigna nepalensis | |
15572661 | G | C | 62 | 2496.77 | 1.00 | INTRON( | Vigna nepalensis | |
15572793 | G | A | 63 | 2499.77 | 1.00 | INTRON( | Vigna nepalensis | |
15573424 | T | C | 47 | 2063.77 | 1.00 | INTRON( | Vigna nepalensis | |
15573539 | G | A | 52 | 2185.77 | 1.00 | INTRON( | Vigna nepalensis | |
15573845 | G | C | 62 | 2595.77 | 1.00 | INTRON( | Vigna nepalensis | |
15574284 | A | G | 44 | 1810.77 | 1.00 | INTRON( | Vigna nepalensis | |
15574420 | A | G | 47 | 1903.77 | 1.00 | INTRON( | Vigna nepalensis | |
15574449 | C | T | 39 | 1797.77 | 1.00 | INTRON( | Vigna nepalensis | |
15574452 | G | A | 41 | 1798.77 | 1.00 | INTRON( | Vigna nepalensis | |
15575030 | A | G | 56 | 2319.77 | 1.00 | INTRON( | Vigna nepalensis | |
15575170 | C | G | 42 | 1648.77 | 1.00 | INTRON( | Vigna nepalensis | |
15575293 | C | G | 56 | 2223.77 | 1.00 | INTRON( | Vigna nepalensis | |
15575446 | G | C | 41 | 1591.77 | 1.00 | INTRON( | Vigna nepalensis | |
15575460 | T | C | 40 | 1549.77 | 1.00 | INTRON( | Vigna nepalensis | |
15575481 | T | G | 40 | 1569.77 | 1.00 | INTRON( | Vigna nepalensis | |
15575588 | T | G | 51 | 2108.77 | 1.00 | INTRON( | Vigna nepalensis | |
15575816 | G | C | 50 | 1947.77 | 1.00 | INTRON( | Vigna nepalensis | |
15575862 | G | A | 52 | 2294.77 | 1.00 | INTRON( | Vigna nepalensis | |
15576160 | C | T | 53 | 2172.77 | 1.00 | INTRON( | Vigna nepalensis | |
15576280 | C | T | 60 | 2363.77 | 1.00 | INTRON( | Vigna nepalensis | |
15576310 | A | G | 49 | 2164.77 | 1.00 | INTRON( | Vigna nepalensis | |
15576314 | T | C | 50 | 2329.77 | 1.00 | INTRON( | Vigna nepalensis | |
15576319 | G | A | 50 | 2206.77 | 1.00 | INTRON( | Vigna nepalensis | |
15576421 | T | C | 51 | 2109.77 | 1.00 | INTRON( | Vigna nepalensis | |
15576496 | C | T | 62 | 2383.77 | 0.98 | INTRON( | Vigna nepalensis | |
15576586 | C | T | 52 | 2195.77 | 1.00 | INTRON( | Vigna nepalensis | |
15576610 | T | C | 53 | 2491.77 | 1.00 | INTRON( | Vigna nepalensis | |
15576635 | G | A | 56 | 2611.77 | 1.00 | INTRON( | Vigna nepalensis | |
15576638 | C | G | 57 | 2521.77 | 1.00 | INTRON( | Vigna nepalensis | |
15576673 | T | G | 57 | 2232.77 | 1.00 | INTRON( | Vigna nepalensis | |
15576709 | T | C | 49 | 1878.77 | 1.00 | INTRON( | Vigna nepalensis | |
15576764 | C | G | 55 | 2081.77 | 0.96 | INTRON( | Vigna nepalensis | |
15576935 | G | T | 74 | 2798.77 | 1.00 | INTRON( | Vigna nepalensis | |
15577004 | T | C | 72 | 2977.77 | 1.00 | INTRON( | Vigna nepalensis | |
15577144 | C | T | 54 | 2374.77 | 1.00 | INTRON( | Vigna nepalensis | |
15577170 | A | G | 57 | 2536.77 | 1.00 | INTRON( | Vigna nepalensis | |
15577196 | G | C | 63 | 2956.77 | 1.00 | INTRON( | Vigna nepalensis | |
15577219 | A | G | 68 | 2979.77 | 1.00 | INTRON( | Vigna nepalensis | |
15577467 | C | T | 62 | 2464.77 | 0.98 | INTRON( | Vigna nepalensis | |
15577569 | T | C | 47 | 2078.77 | 1.00 | INTRON( | Vigna nepalensis | |
15577570 | G | A | 46 | 2078.77 | 1.00 | INTRON( | Vigna nepalensis | |
15577624 | T | C | 35 | 1806.77 | 1.00 | INTRON( | Vigna nepalensis | |
15577642 | T | C | 45 | 1896.77 | 1.00 | INTRON( | Vigna nepalensis | |
15577694 | C | G | 52 | 2161.77 | 1.00 | INTRON( | Vigna nepalensis | |
15578827 | G | A | 52 | 2119.77 | 1.00 | INTRON( | Vigna nepalensis | |
15579035 | C | T | 38 | 1761.77 | 1.00 | INTRON( | Vigna nepalensis | |
15579041 | G | A | 37 | 1681.77 | 1.00 | INTRON( | Vigna nepalensis | |
15579048 | T | G | 37 | 1726.77 | 1.00 | INTRON( | Vigna nepalensis | |
15579089 | C | T | 49 | 2311.77 | 1.00 | INTRON( | Vigna nepalensis | |
15579090 | A | C | 50 | 2221.77 | 1.00 | INTRON( | Vigna nepalensis | |
15579116 | A | G | 44 | 2041.77 | 1.00 | INTRON( | Vigna nepalensis | |
15579124 | G | T | 42 | 1996.77 | 1.00 | INTRON( | Vigna nepalensis | |
15579132 | T | C | 43 | 1987.77 | 1.00 | INTRON( | Vigna nepalensis | |
15579133 | A | C | 42 | 1942.77 | 1.00 | INTRON( | Vigna nepalensis | |
15579134 | G | A | 41 | 1942.77 | 1.00 | INTRON( | Vigna nepalensis | |
15579172 | T | C | 35 | 2196.77 | 1.00 | INTRON( | Vigna nepalensis | |
15579181 | C | G | 43 | 1783.77 | 1.00 | INTRON( | Vigna nepalensis | |
15579243 | G | A | 51 | 2018.77 | 1.00 | INTRON( | Vigna nepalensis | |
15579481 | G | T | 31 | 1037.77 | 1.00 | UTR_3_PRIME( | Vigna nepalensis |
Indels
Position | Ref. | Alt. | Depth | Score | Freq. Of Alt. | Effect | Species | |
---|---|---|---|---|---|---|---|---|
15564912 | TG | T | 49 | 2207.73 | 1.00 | INTRON( | Vigna nepalensis | |
15565682 | CT | C | 45 | 1313.73 | 1.00 | INTRON( | Vigna nepalensis | |
15565812 | GTTTGGAACC | G | 49 | 2160.73 | 1.00 | INTRON( | Vigna nepalensis | |
15568693 | A | ATTTT | 45 | 2122.73 | 1.00 | INTRON( | Vigna nepalensis | |
15568694 | GGCTA | G | 47 | 2212.73 | 1.00 | INTRON( | Vigna nepalensis | |
15569149 | CTT | C | 11 | 93.73 | 0.27 | INTRON( | Vigna nepalensis | |
15569151 | T | G, TAGAG | 8 | 453.73 | 1.00 | INTRON( | Vigna nepalensis | |
15570872 | A | A | 36 | 395.73 | 0.33 | INTRON( | Vigna nepalensis | |
15572417 | G | GGAAA | 74 | 3331.73 | 1.00 | INTRON( | Vigna nepalensis | |
15572844 | A | AT | 59 | 2192.73 | 1.00 | INTRON( | Vigna nepalensis | |
15573165 | AT | A | 66 | 2631.73 | 1.00 | INTRON( | Vigna nepalensis | |
15573422 | AT | A | 47 | 2054.73 | 1.00 | INTRON( | Vigna nepalensis | |
15574618 | T | T | 8 | 300.75 | 1.00 | INTRON( | Vigna nepalensis | |
15574805 | T | T | 26 | 1816.73 | 1.00 | INTRON( | Vigna nepalensis | |
15575852 | GA | G | 52 | 2256.73 | 1.00 | INTRON( | Vigna nepalensis | |
15577171 | TGGGAC | T | 57 | 2662.73 | 1.00 | INTRON( | Vigna nepalensis | |
15577180 | T | TC | 61 | 2752.73 | 1.00 | INTRON( | Vigna nepalensis | |
15577182 | TAAA | T | 60 | 2842.73 | 1.00 | INTRON( | Vigna nepalensis | |
15577188 | CCCAA | C | 62 | 2797.73 | 1.00 | INTRON( | Vigna nepalensis | |
15577611 | C | C | 31 | 2132.73 | 1.00 | INTRON( | Vigna nepalensis | |
15577793 | C | CAA | 59 | 2640.73 | 1.00 | INTRON( | Vigna nepalensis | |
15577796 | C | C | 57 | 3304.73 | 1.00 | INTRON( | Vigna nepalensis | |
15579025 | TA | T | 35 | 1557.73 | 1.00 | INTRON( | Vigna nepalensis | |
15579066 | T | T | 44 | 2347.73 | 1.00 | INTRON( | Vigna nepalensis | |
15579072 | C | C | 47 | 2797.73 | 1.00 | INTRON( | Vigna nepalensis | |
15579100 | T | TG | 47 | 2122.73 | 1.00 | INTRON( | Vigna nepalensis | |
15579170 | T | T | 36 | 2089.73 | 1.00 | INTRON( | Vigna nepalensis | |
15579250 | C | CT | 48 | 1355.73 | 1.00 | INTRON( | Vigna nepalensis |