VIGGS:Variant information

Chr06:32952089 - 32956156

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[SNPs] [Indels]

SNPs

Position	Ref.	Alt.	Depth	Score	Freq. Of Alt.	Effect	Species
32953062	A	G	46	1836.77	1.00	INTRON(\|\|\|None\|Vigan.06G192800.01), UPSTREAM(\|3856\|\|None\|Vigan.06G192900.01)	Vigna nepalensis
32953946	G	C	62	2519.77	1.00	INTRON(\|\|\|None\|Vigan.06G192800.01), UPSTREAM(\|2972\|\|None\|Vigan.06G192900.01)	Vigna nepalensis
32954314	C	T	46	1938.77	1.00	SYNONYMOUS_CODING(SILENT\|aaC/aaT\|N174\|None\|Vigan.06G192800.01), UPSTREAM(\|2604\|\|None\|Vigan.06G192900.01)	Vigna nepalensis
32954395	C	T	45	1691.77	1.00	SYNONYMOUS_CODING(SILENT\|gtC/gtT\|V201\|None\|Vigan.06G192800.01), UPSTREAM(\|2523\|\|None\|Vigan.06G192900.01)	Vigna nepalensis
32954443	T	C	59	1769.77	0.85	SYNONYMOUS_CODING(SILENT\|taT/taC\|Y217\|None\|Vigan.06G192800.01), UPSTREAM(\|2475\|\|None\|Vigan.06G192900.01)	Vigna nepalensis
32954449	T	G	62	186.77	0.15	SYNONYMOUS_CODING(SILENT\|gcT/gcG\|A219\|None\|Vigan.06G192800.01), UPSTREAM(\|2469\|\|None\|Vigan.06G192900.01)	Vigna nepalensis
32954450	G	C	62	180.77	0.15	NON_SYNONYMOUS_CODING(MISSENSE\|Gct/Cct\|A220P\|None\|Vigan.06G192800.01), UPSTREAM(\|2468\|\|None\|Vigan.06G192900.01)	Vigna nepalensis
32954453	A	G	63	180.77	0.14	NON_SYNONYMOUS_CODING(MISSENSE\|Att/Gtt\|I221V\|None\|Vigan.06G192800.01), UPSTREAM(\|2465\|\|None\|Vigan.06G192900.01)	Vigna nepalensis
32954459	A	T	61	237.77	0.16	NON_SYNONYMOUS_CODING(MISSENSE\|Att/Ttt\|I223F\|None\|Vigan.06G192800.01), UPSTREAM(\|2459\|\|None\|Vigan.06G192900.01)	Vigna nepalensis
32954514	C	A	58	277.77	0.21	NON_SYNONYMOUS_CODING(MISSENSE\|cCt/cAt\|P241H\|None\|Vigan.06G192800.01), UPSTREAM(\|2404\|\|None\|Vigan.06G192900.01)	Vigna nepalensis
32954665	C	G	54	2179.77	1.00	INTRON(\|\|\|None\|Vigan.06G192800.01), UPSTREAM(\|2253\|\|None\|Vigan.06G192900.01)	Vigna nepalensis
32954993	G	C	66	2689.77	1.00	INTRON(\|\|\|None\|Vigan.06G192800.01), UPSTREAM(\|1925\|\|None\|Vigan.06G192900.01)	Vigna nepalensis
32955253	T	C	73	2850.77	1.00	INTRON(\|\|\|None\|Vigan.06G192800.01), UPSTREAM(\|1665\|\|None\|Vigan.06G192900.01)	Vigna nepalensis
32955409	G	A	63	2461.77	1.00	SYNONYMOUS_CODING(SILENT\|gaG/gaA\|E357\|None\|Vigan.06G192800.01), UPSTREAM(\|1509\|\|None\|Vigan.06G192900.01)	Vigna nepalensis
32955484	T	C	57	2275.77	1.00	UPSTREAM(\|1434\|\|None\|Vigan.06G192900.01), UTR_3_PRIME(\|24\|\|None\|Vigan.06G192800.01)	Vigna nepalensis
32955654	A	C	46	1763.77	1.00	UPSTREAM(\|1264\|\|None\|Vigan.06G192900.01), UTR_3_PRIME(\|194\|\|None\|Vigan.06G192800.01)	Vigna nepalensis
32956030	A	T	59	2680.77	1.00	UPSTREAM(\|888\|\|None\|Vigan.06G192900.01), UTR_3_PRIME(\|570\|\|None\|Vigan.06G192800.01)	Vigna nepalensis
32956031	A	C	60	2680.77	1.00	UPSTREAM(\|887\|\|None\|Vigan.06G192900.01), UTR_3_PRIME(\|571\|\|None\|Vigan.06G192800.01)	Vigna nepalensis

Indels

Position	Ref.	Alt.	Depth	Score	Freq. Of Alt.	Effect	Species
32952308	GA	G	55	1916.73	1.00	UPSTREAM(\|4609\|\|None\|Vigan.06G192900.01), UTR_5_PRIME(\|70\|\|None\|Vigan.06G192800.01)	Vigna nepalensis
32954674	AGCT	A	54	2355.73	1.00	INTRON(\|\|\|None\|Vigan.06G192800.01), UPSTREAM(\|2243\|\|None\|Vigan.06G192900.01)	Vigna nepalensis
32955059	A	AT	58	1686.73	1.00	INTRON(\|\|\|None\|Vigan.06G192800.01), UPSTREAM(\|1858\|\|None\|Vigan.06G192900.01)	Vigna nepalensis
32955763	C	CT	58	1805.73	1.00	UPSTREAM(\|1154\|\|None\|Vigan.06G192900.01), UTR_3_PRIME(\|304\|\|None\|Vigan.06G192800.01)	Vigna nepalensis