VIGGS:Variant information

Chr04:47112077 - 47113593

Position	Ref.	Alt.	Depth	Score	Freq. Of Alt.	Effect	Species
47112151	A	T	52	2071.77	1.00	START_GAINED(\|\|\|None\|Vigan.04G349300.01), UPSTREAM(\|2547\|\|None\|Vigan.04G349400.01), UTR_5_PRIME(\|15\|\|None\|Vigan.04G349300.01)	Vigna nepalensis
47112240	T	C	63	2339.77	1.00	SYNONYMOUS_CODING(SILENT\|tcT/tcC\|S25\|None\|Vigan.04G349300.01), UPSTREAM(\|2458\|\|None\|Vigan.04G349400.01)	Vigna nepalensis
47112571	G	C	48	2153.77	1.00	NON_SYNONYMOUS_CODING(MISSENSE\|aGt/aCt\|S79T\|None\|Vigan.04G349300.01), UPSTREAM(\|2127\|\|None\|Vigan.04G349400.01)	Vigna nepalensis
47112578	A	C	52	2253.77	1.00	SYNONYMOUS_CODING(SILENT\|acA/acC\|T81\|None\|Vigan.04G349300.01), UPSTREAM(\|2120\|\|None\|Vigan.04G349400.01)	Vigna nepalensis
47112653	A	T	65	2420.77	1.00	INTRON(\|\|\|None\|Vigan.04G349300.01), UPSTREAM(\|2045\|\|None\|Vigan.04G349400.01)	Vigna nepalensis
47113084	T	A	59	2217.77	1.00	INTRON(\|\|\|None\|Vigan.04G349300.01), UPSTREAM(\|1614\|\|None\|Vigan.04G349400.01)	Vigna nepalensis
47113318	C	T	65	2577.77	1.00	NON_SYNONYMOUS_CODING(MISSENSE\|aCg/aTg\|T144M\|None\|Vigan.04G349300.01), UPSTREAM(\|1380\|\|None\|Vigan.04G349400.01)	Vigna nepalensis

Position	Ref.	Alt.	Depth	Score	Freq. Of Alt.	Effect	Species
47112107	T	TCTCG	40	1896.73	1.00	UPSTREAM(\|2590\|\|None\|Vigan.04G349400.01), UTR_5_PRIME(\|58\|\|None\|Vigan.04G349300.01)	Vigna nepalensis
47112109	A	AG	43	1942.73	1.00	UPSTREAM(\|2588\|\|None\|Vigan.04G349400.01), UTR_5_PRIME(\|56\|\|None\|Vigan.04G349300.01)	Vigna nepalensis
47112111	T	TGGTTAATGGTTGCAATCTCG	39	2266.73	1.00	UPSTREAM(\|2586\|\|None\|Vigan.04G349400.01), UTR_5_PRIME(\|54\|\|None\|Vigan.04G349300.01)	Vigna nepalensis
47113576	A	AT	59	1918.73	1.00	DOWNSTREAM(\|4893\|\|None\|Vigan.04G349500.01), UPSTREAM(\|1121\|\|None\|Vigan.04G349400.01), UTR_3_PRIME(\|195\|\|None\|Vigan.04G349300.01)	Vigna nepalensis