VIGGS:Variant information

Chr04:22032368 - 22042019

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SNPs

Position	Ref.	Alt.	Depth	Score	Freq. Of Alt.	Effect	Species
22033959	C	G	51	1973.77	1.00	UTR_5_PRIME(\|579\|\|None\|Vigan.04G158400.01)	Vigna nepalensis
22034021	C	T	50	1806.77	1.00	UTR_5_PRIME(\|517\|\|None\|Vigan.04G158400.01)	Vigna nepalensis
22034844	T	C	30	1187.77	1.00	INTRON(\|\|\|None\|Vigan.04G158400.01)	Vigna nepalensis
22035530	C	A	76	539.77	0.28	INTRON(\|\|\|None\|Vigan.04G158400.01)	Vigna nepalensis
22035557	C	T	82	894.77	0.32	INTRON(\|\|\|None\|Vigan.04G158400.01)	Vigna nepalensis
22035560	A	T	83	885.77	0.31	INTRON(\|\|\|None\|Vigan.04G158400.01)	Vigna nepalensis
22035574	T	G	87	929.77	0.32	INTRON(\|\|\|None\|Vigan.04G158400.01)	Vigna nepalensis
22035605	T	A	70	297.77	0.24	INTRON(\|\|\|None\|Vigan.04G158400.01)	Vigna nepalensis
22036349	A	G	47	1851.77	1.00	INTRON(\|\|\|None\|Vigan.04G158400.01)	Vigna nepalensis
22036880	C	A	54	2053.77	1.00	INTRON(\|\|\|None\|Vigan.04G158400.01)	Vigna nepalensis
22037931	A	G	61	2398.77	1.00	INTRON(\|\|\|None\|Vigan.04G158400.01)	Vigna nepalensis
22038544	T	G	56	2187.77	1.00	INTRON(\|\|\|None\|Vigan.04G158400.01)	Vigna nepalensis
22038610	C	A	49	2150.77	1.00	INTRON(\|\|\|None\|Vigan.04G158400.01)	Vigna nepalensis
22038612	A	T	49	2150.77	1.00	INTRON(\|\|\|None\|Vigan.04G158400.01)	Vigna nepalensis
22038761	A	G	59	2395.77	1.00	INTRON(\|\|\|None\|Vigan.04G158400.01), UPSTREAM(\|4858\|\|None\|Vigan.04G158500.01)	Vigna nepalensis
22039578	T	G	49	1939.77	1.00	INTRON(\|\|\|None\|Vigan.04G158400.01), UPSTREAM(\|4041\|\|None\|Vigan.04G158500.01)	Vigna nepalensis
22039636	A	T	47	1808.77	1.00	INTRON(\|\|\|None\|Vigan.04G158400.01), UPSTREAM(\|3983\|\|None\|Vigan.04G158500.01)	Vigna nepalensis
22039879	A	G	33	1165.77	1.00	INTRON(\|\|\|None\|Vigan.04G158400.01), UPSTREAM(\|3740\|\|None\|Vigan.04G158500.01)	Vigna nepalensis
22040476	A	T	64	2507.77	1.00	INTRON(\|\|\|None\|Vigan.04G158400.01), UPSTREAM(\|3143\|\|None\|Vigan.04G158500.01)	Vigna nepalensis
22040509	T	A	57	2208.77	0.98	INTRON(\|\|\|None\|Vigan.04G158400.01), UPSTREAM(\|3110\|\|None\|Vigan.04G158500.01)	Vigna nepalensis
22040699	C	T	31	1360.77	1.00	INTRON(\|\|\|None\|Vigan.04G158400.01), UPSTREAM(\|2920\|\|None\|Vigan.04G158500.01)	Vigna nepalensis
22040705	C	T	31	1438.77	1.00	INTRON(\|\|\|None\|Vigan.04G158400.01), UPSTREAM(\|2914\|\|None\|Vigan.04G158500.01)	Vigna nepalensis

Indels

Position	Ref.	Alt.	Depth	Score	Freq. Of Alt.	Effect	Species
22032556	GCAGCAGCTGCCTTA	G	47	2057.73	1.00	UTR_5_PRIME(\|1968\|\|None\|Vigan.04G158400.01)	Vigna nepalensis
22035259	TA	T	37	1195.73	0.95	INTRON(\|\|\|None\|Vigan.04G158400.01)	Vigna nepalensis
22035505	TG	T	70	300.73	0.16	INTRON(\|\|\|None\|Vigan.04G158400.01)	Vigna nepalensis
22035963	GT	G	57	1592.73	1.00	INTRON(\|\|\|None\|Vigan.04G158400.01)	Vigna nepalensis
22036092	CGG	C	63	2783.73	1.00	INTRON(\|\|\|None\|Vigan.04G158400.01)	Vigna nepalensis
22037628	ACATGATAAATAGGATAACTCTAGACACAATATAAT	A	37	1511.73	0.97	INTRON(\|\|\|None\|Vigan.04G158400.01)	Vigna nepalensis
22041904	GTGAAT	G	51	2258.73	1.00	UPSTREAM(\|1714\|\|None\|Vigan.04G158500.01), UTR_3_PRIME(\|414\|\|None\|Vigan.04G158400.01)	Vigna nepalensis
22042002	CTT	C	58	2191.73	1.00	UPSTREAM(\|1616\|\|None\|Vigan.04G158500.01), UTR_3_PRIME(\|512\|\|None\|Vigan.04G158400.01)	Vigna nepalensis