VIGGS:Variant information

Chr02:7895123 - 7905040

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[SNPs] [Indels]

SNPs

Position	Ref.	Alt.	Depth	Score	Freq. Of Alt.	Effect	Species
7895885	C	A	48	1785.77	1.00	DOWNSTREAM(\|1567\|\|None\|Vigan.02G097300.01), INTRON(\|\|\|None\|Vigan.02G097400.01)	Vigna nepalensis
7896400	T	G	41	1878.77	1.00	DOWNSTREAM(\|2082\|\|None\|Vigan.02G097300.01), INTRON(\|\|\|None\|Vigan.02G097400.01)	Vigna nepalensis
7896402	C	A	40	1854.77	1.00	DOWNSTREAM(\|2084\|\|None\|Vigan.02G097300.01), INTRON(\|\|\|None\|Vigan.02G097400.01)	Vigna nepalensis
7896490	C	A	53	2089.77	1.00	DOWNSTREAM(\|2172\|\|None\|Vigan.02G097300.01), INTRON(\|\|\|None\|Vigan.02G097400.01)	Vigna nepalensis
7896999	G	T	48	1846.77	1.00	DOWNSTREAM(\|2681\|\|None\|Vigan.02G097300.01), SYNONYMOUS_CODING(SILENT\|atC/atA\|I365\|None\|Vigan.02G097400.01)	Vigna nepalensis
7897171	T	C	60	2375.77	1.00	DOWNSTREAM(\|2853\|\|None\|Vigan.02G097300.01), INTRON(\|\|\|None\|Vigan.02G097400.01)	Vigna nepalensis
7897319	G	A	53	1983.77	1.00	DOWNSTREAM(\|3001\|\|None\|Vigan.02G097300.01), INTRON(\|\|\|None\|Vigan.02G097400.01)	Vigna nepalensis
7897350	T	C	45	1733.77	1.00	DOWNSTREAM(\|3032\|\|None\|Vigan.02G097300.01), INTRON(\|\|\|None\|Vigan.02G097400.01)	Vigna nepalensis
7897730	T	C	55	2079.77	1.00	DOWNSTREAM(\|3412\|\|None\|Vigan.02G097300.01), INTRON(\|\|\|None\|Vigan.02G097400.01)	Vigna nepalensis
7898157	A	G	54	2194.77	1.00	DOWNSTREAM(\|3839\|\|None\|Vigan.02G097300.01), INTRON(\|\|\|None\|Vigan.02G097400.01)	Vigna nepalensis
7898500	T	C	58	2104.77	1.00	DOWNSTREAM(\|4182\|\|None\|Vigan.02G097300.01), SYNONYMOUS_CODING(SILENT\|ttA/ttG\|L197\|None\|Vigan.02G097400.01)	Vigna nepalensis
7904097	T	A	20	747.77	1.00	INTRON(\|\|\|None\|Vigan.02G097400.01), SPLICE_SITE_REGION(\|\|\|None\|Vigan.02G097400.01), UPSTREAM(\|147\|\|None\|Vigan.02G097500.01)	Vigna nepalensis
7904726	A	G	49	1762.77	1.00	DOWNSTREAM(\|86\|\|None\|Vigan.02G097500.01), NON_SYNONYMOUS_CODING(MISSENSE\|gTt/gCt\|V34A\|None\|Vigan.02G097400.01)	Vigna nepalensis
7904842	C	T	46	1798.77	1.00	DOWNSTREAM(\|202\|\|None\|Vigan.02G097500.01), UTR_5_PRIME(\|16\|\|None\|Vigan.02G097400.01)	Vigna nepalensis

Indels

Position	Ref.	Alt.	Depth	Score	Freq. Of Alt.	Effect	Species
7895808	T	TA	40	1369.73	1.00	DOWNSTREAM(\|1491\|\|None\|Vigan.02G097300.01), INTRON(\|\|\|None\|Vigan.02G097400.01)	Vigna nepalensis
7896389	AC	A	36	1465.73	1.00	DOWNSTREAM(\|2072\|\|None\|Vigan.02G097300.01), INTRON(\|\|\|None\|Vigan.02G097400.01)	Vigna nepalensis
7897359	AT	A	36	1042.73	1.00	DOWNSTREAM(\|3042\|\|None\|Vigan.02G097300.01), INTRON(\|\|\|None\|Vigan.02G097400.01)	Vigna nepalensis
7898833	A	ATT	48	1775.73	1.00	DOWNSTREAM(\|4516\|\|None\|Vigan.02G097300.01), INTRON(\|\|\|None\|Vigan.02G097400.01)	Vigna nepalensis
7904232	GA	G	41	1236.73	1.00	INTRON(\|\|\|None\|Vigan.02G097400.01), UPSTREAM(\|11\|\|None\|Vigan.02G097500.01)	Vigna nepalensis