VIGGS:Variant information

Chr02:7500694 - 7510887

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SNPs

Position	Ref.	Alt.	Depth	Score	Freq. Of Alt.	Effect	Species
7501419	T	C	72	2710.77	0.97	INTRON(\|\|\|None\|Vigan.02G094100.01)	Vigna nepalensis
7501644	T	C	52	2023.77	1.00	NON_SYNONYMOUS_CODING(MISSENSE\|tTg/tCg\|L134S\|None\|Vigan.02G094100.01)	Vigna nepalensis
7502396	T	C	53	2157.77	1.00	INTRON(\|\|\|None\|Vigan.02G094100.01)	Vigna nepalensis
7503035	G	A	62	2439.77	1.00	INTRON(\|\|\|None\|Vigan.02G094100.01)	Vigna nepalensis
7503607	G	A	69	2771.77	1.00	INTRON(\|\|\|None\|Vigan.02G094100.01)	Vigna nepalensis
7503620	T	A	71	3179.77	1.00	INTRON(\|\|\|None\|Vigan.02G094100.01)	Vigna nepalensis
7503622	G	T	70	3179.77	1.00	INTRON(\|\|\|None\|Vigan.02G094100.01)	Vigna nepalensis
7504422	T	A	52	2060.77	1.00	INTRON(\|\|\|None\|Vigan.02G094100.01)	Vigna nepalensis
7504713	C	G	68	2727.77	1.00	INTRON(\|\|\|None\|Vigan.02G094100.01)	Vigna nepalensis
7505413	C	T	46	1862.77	1.00	INTRON(\|\|\|None\|Vigan.02G094100.01)	Vigna nepalensis
7505473	A	G	51	1984.77	1.00	INTRON(\|\|\|None\|Vigan.02G094100.01)	Vigna nepalensis
7506213	A	T	52	2218.77	1.00	INTRON(\|\|\|None\|Vigan.02G094100.01)	Vigna nepalensis
7506600	G	A	60	2323.77	1.00	INTRON(\|\|\|None\|Vigan.02G094100.01)	Vigna nepalensis
7506647	C	A	56	2202.77	1.00	INTRON(\|\|\|None\|Vigan.02G094100.01)	Vigna nepalensis
7507427	C	G	66	2478.77	1.00	INTRON(\|\|\|None\|Vigan.02G094100.01)	Vigna nepalensis
7507500	G	T	69	2690.77	1.00	INTRON(\|\|\|None\|Vigan.02G094100.01)	Vigna nepalensis
7507969	G	T	53	2108.77	1.00	SYNONYMOUS_CODING(SILENT\|gtG/gtT\|V458\|None\|Vigan.02G094100.01)	Vigna nepalensis
7508213	C	A	34	1241.77	1.00	UTR_3_PRIME(\|14\|\|None\|Vigan.02G094100.01)	Vigna nepalensis
7508459	A	G	69	2795.77	1.00	UTR_3_PRIME(\|260\|\|None\|Vigan.02G094100.01)	Vigna nepalensis
7508637	T	A	64	2461.77	1.00	UTR_3_PRIME(\|438\|\|None\|Vigan.02G094100.01)	Vigna nepalensis
7508886	T	C	59	2398.77	1.00	UTR_3_PRIME(\|687\|\|None\|Vigan.02G094100.01)	Vigna nepalensis
7508970	C	T	40	1751.77	1.00	UTR_3_PRIME(\|771\|\|None\|Vigan.02G094100.01)	Vigna nepalensis
7508972	G	A	39	1751.77	1.00	UTR_3_PRIME(\|773\|\|None\|Vigan.02G094100.01)	Vigna nepalensis
7509055	C	T	53	2116.77	1.00	UTR_3_PRIME(\|856\|\|None\|Vigan.02G094100.01)	Vigna nepalensis
7509134	T	C	56	2193.77	1.00	UTR_3_PRIME(\|935\|\|None\|Vigan.02G094100.01)	Vigna nepalensis
7509196	C	T	54	2144.77	1.00	UTR_3_PRIME(\|997\|\|None\|Vigan.02G094100.01)	Vigna nepalensis
7509995	C	T	62	2721.77	1.00	UTR_3_PRIME(\|1796\|\|None\|Vigan.02G094100.01)	Vigna nepalensis
7510086	T	A	47	1803.77	1.00	UTR_3_PRIME(\|1887\|\|None\|Vigan.02G094100.01)	Vigna nepalensis
7510618	G	T	42	1647.77	1.00	UTR_3_PRIME(\|2419\|\|None\|Vigan.02G094100.01)	Vigna nepalensis
7510744	C	T	68	2733.77	1.00	UTR_3_PRIME(\|2545\|\|None\|Vigan.02G094100.01)	Vigna nepalensis
7510849	A	G	63	2410.77	1.00	UTR_3_PRIME(\|2650\|\|None\|Vigan.02G094100.01)	Vigna nepalensis

Indels

Position	Ref.	Alt.	Depth	Score	Freq. Of Alt.	Effect	Species
7504153	TG	T	69	2667.73	1.00	INTRON(\|\|\|None\|Vigan.02G094100.01)	Vigna nepalensis
7506210	TAA	T	49	2209.73	1.00	INTRON(\|\|\|None\|Vigan.02G094100.01)	Vigna nepalensis
7509586	C	CA	52	1395.73	0.98	UTR_3_PRIME(\|1388\|\|None\|Vigan.02G094100.01)	Vigna nepalensis
7509659	CAT	C	48	2107.73	1.00	UTR_3_PRIME(\|1461\|\|None\|Vigan.02G094100.01)	Vigna nepalensis
7509937	A	AT	60	1993.73	1.00	UTR_3_PRIME(\|1739\|\|None\|Vigan.02G094100.01)	Vigna nepalensis
7509999	TGTTGAAAAATAAC	T	58	2658.73	1.00	UTR_3_PRIME(\|1801\|\|None\|Vigan.02G094100.01)	Vigna nepalensis