VIGGS:Variant information

Chr01:7888956 - 7892007

Position	Ref.	Alt.	Depth	Score	Freq. Of Alt.	Effect	Species
7889733	T	C	49	2049.77	1.00	INTRON(\|\|\|None\|Vigan.01G093100.01), UPSTREAM(\|3920\|\|None\|Vigan.01G093200.01)	Vigna nepalensis
7890000	G	C	42	1613.77	1.00	INTRON(\|\|\|None\|Vigan.01G093100.01), UPSTREAM(\|3653\|\|None\|Vigan.01G093200.01)	Vigna nepalensis
7890496	T	C	55	2122.77	1.00	SYNONYMOUS_CODING(SILENT\|aaT/aaC\|N235\|None\|Vigan.01G093100.01), UPSTREAM(\|3157\|\|None\|Vigan.01G093200.01)	Vigna nepalensis
7891009	A	T	65	2543.77	1.00	INTRON(\|\|\|None\|Vigan.01G093100.01), UPSTREAM(\|2644\|\|None\|Vigan.01G093200.01)	Vigna nepalensis
7891134	C	T	60	2415.77	1.00	INTRON(\|\|\|None\|Vigan.01G093100.01), UPSTREAM(\|2519\|\|None\|Vigan.01G093200.01)	Vigna nepalensis
7891230	C	T	50	2020.77	1.00	INTRON(\|\|\|None\|Vigan.01G093100.01), UPSTREAM(\|2423\|\|None\|Vigan.01G093200.01)	Vigna nepalensis
7891616	C	G	61	2316.77	1.00	NON_SYNONYMOUS_CODING(MISSENSE\|aCc/aGc\|T515S\|None\|Vigan.01G093100.01), UPSTREAM(\|2037\|\|None\|Vigan.01G093200.01)	Vigna nepalensis
7891995	C	T	43	1765.77	1.00	UPSTREAM(\|1658\|\|None\|Vigan.01G093200.01), UTR_3_PRIME(\|240\|\|None\|Vigan.01G093100.01)	Vigna nepalensis

Position	Ref.	Alt.	Depth	Score	Freq. Of Alt.	Effect	Species
7889853	C	CA	35	944.73	1.00	INTRON(\|\|\|None\|Vigan.01G093100.01), UPSTREAM(\|3799\|\|None\|Vigan.01G093200.01)	Vigna nepalensis
7891692	C	CTCA	46	2015.73	1.00	CODON_INSERTION(\|tca/TCAtca\|S541SS\|None\|Vigan.01G093100.01), UPSTREAM(\|1960\|\|None\|Vigan.01G093200.01)	Vigna nepalensis
7891820	GT	G	35	918.73	1.00	UPSTREAM(\|1832\|\|None\|Vigan.01G093200.01), UTR_3_PRIME(\|66\|\|None\|Vigan.01G093100.01)	Vigna nepalensis