GBrowse Details

Vigan.UMG010600.01

Basic Information:
Name: Vigan.UMG010600.01
Multiple alignment
Variant Information
Position: Scaffold_0032:49161..51239 (- strand)
Length: 2079
Functional Information:
Description: Similar to Uncharacterized protein. [C6TFW8, Glycine max]
InterPro: SOUL haem-binding protein (IPR006917)
Regulatory factor, effector binding domain (IPR011256)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:38.52,32.49,160.13,230.23,0.60,532.21,17.24,76.83
Arabidopsis thaliana homolog: AT1G17100.1
Automatic updates:
Name: BT096512 NCBI(nuccore)
Organism: Glycine max
Description: Soybean clone JCVI-FLGm-9P4 unknown mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001249085 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100305993 (LOC100305993), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Scaffold_0032:49161..49356 (- strand)
Length: 196
Type: three_prime_UTR
Position: Scaffold_0032:49357..49792 (- strand)
Length: 436
Type: CDS
Position: Scaffold_0032:50876..51135 (- strand)
Length: 260
Type: CDS
Position: Scaffold_0032:51136..51239 (- strand)
Length: 104
Type: five_prime_UTR

>Vigan.UMG010600.01 class=Sequence position=Scaffold_0032:49161..51239 (- strand)
GTGGCTTGTA ATAATCACAG AGAGGGTTTC ATAAAATATA TGGACATTAA GCCATAGAAT TTCACATTTT ATCCTTTGCT
CGTTAGCGTT CTGCAATTTC CGCCATGGCT GCTGCTACCA TCGCATGCAA GGTTTCACTG CTTTTGAGCC TCTTCTCTGT
TTGGTTTGTG TATGTAAGTT CGGATTCTCT TCCGAATGTA GGGGCACTTC CCCCAACATG CCAGCGCATA GAATGTCCCA
GCTATGATCT CATTCAGGTT GGAAATGGCT ACGAAATCCG CCGCTATAAT TCTCCCGTTT GGATTTCCAA CTCCCCCATT
CAAGACATTT CTCTTGTAGA AGCCACAAGA ACCGGCTTCT TGAGGTAATC TTATCTTCGT TTATATCACA ATAAAAATAA
TATTATCATG TTATGTATGA GAAAGTGAGT TTATGGTCAT CACACTACAT ATTTGTGGGT AATGGGCTGA ACATATCGTT
GCTATAGGTT TTGATAGATT TTGATATCGT ATTAGGAACT GGGTGTAATT CGTCTTCAGA AAACCAATTT GGAAGATCCA
TGTGCAAGTT AGAATTCTTG TGTTGATATA TTAAAGACTT AATCAAACTT ATCTTCTTTT AAGTTTTGGG TTTAGAGTTG
TCGTTTGATT TTGTTTACGA TGACTGATTG GTGTAATTTT TTTCTAGTTC AATGAACTCA TATGAAGTCG TTATATTGAT
TAATGTTTTA ATGAAGTTAT TATATTGATT TGTATTTCGA AATTTTAAAA CATGTTTGGA TAAACTTTTC CATGTTTACT
TGTAAGGGAG AAAAAAATTA ATTTATCCCT AAGTTAACAT TAATTTGTAA GTTAAAAATA AAAATTTTAA AAATAATATA
AATTAATTTA TATAAAACTA ATTTTAGCTT ATTGAGAATT TCATTTCATT TATCTTCTTG TTTTTCAATT GTAGAAGTGT
TTACTTAGAA AAAGTGTGGC ATATTTGATT GGTAATATGG TTCTTCTTTA GATGTATTCG AACTTATTTG TTGCATATTT
GATTGAATAC AGTAACTAAT TCATGGTTTT GAGTGTGACT ACGTCTTGAA CCGAGTCAAC CTATAGAACT GGGGCTTGCG
GGAATATCTT GATTTTCTAC TAGGAAGCCA AAAGTCCTAA TTACAGTGAT TGCAATACAA AAATGCTATT GATGAAGGGT
TACTATTCTG CAGCACGATT AATAAGACTG CAGGAAAATT GCATATGTAA CTGGTTGTAA TGGCATCAGA GATTTTAAAA
TTGCAAATTT GAAGCCACAA TTATGATATC AGATAACAAT TTAAAACCAT GAATTTGGAC TTGTTTTTCT ACACTGCGAA
AGGTTTTTTC AGTTAGTGCT CATGGAATAG GATACTCCCA TCTAAGGAGC TAATTAAATT TGAGTAACCT TCTCGTTTTT
TGCTCAGGCT ATTTGATTAT ATTCAGGGTA AGAACAACTA CAAGCAGAAA ATTGAGATGA CAGCACCTGT GATCTCTGAA
GTATCACCCA GTGATGGACC TTTCTGTGAG TCCTCATTTG TTGTGAGCTT CTATGTGCCG AAAGAGAACC AAGCAAACCC
GCCCCCTGCA AAGGGCCTTC ATGTTCAAAG ATGGAAGACT GTGTATGTAG CAGTTAGACA GTTTGGTGGA TTTGTCAAAG
ATTCTGAAGT TGGGGAGCAA GCTGCAGCCT TGAAGGCTAG TATTGCTGGA ACCAAGTGGG GTGCTGCAGT TGAGAAGAGC
AAGAGTGCTA ATCATACTTC TGTTTACACT GTTGCACAGT ACAATGCCCC TTTTGAATAT GATAACAGGG TGAATGAGAT
ATGGTTCTTG TTTGACATTG AAGATGGACA GCAAACCATG TGAAAATGTA TACCAGACAT AAGCTTTCGA CATGAAAGCA
ATATGCAGAG TGCAAACTGA TGTGTGAGGA GACCTTGAAT GGATGAATAA AGTGTTTCAC GTTTTGCTAA AACACTGTTT
TCTGATTGAC TTGCTTTTGG GGTTCATCAT AGCTATACAC TTGAAACTTT TCAACATAAA AGCAATATGC AGAGTGGAG

>Vigan.UMG010600.01
GTGGCTTGTA ATAATCACAG AGAGGGTTTC ATAAAATATA TGGACATTAA GCCATAGAAT TTCACATTTT ATCCTTTGCT
CGTTAGCGTT CTGCAATTTC CGCCATGGCT GCTGCTACCA TCGCATGCAA GGTTTCACTG CTTTTGAGCC TCTTCTCTGT
TTGGTTTGTG TATGTAAGTT CGGATTCTCT TCCGAATGTA GGGGCACTTC CCCCAACATG CCAGCGCATA GAATGTCCCA
GCTATGATCT CATTCAGGTT GGAAATGGCT ACGAAATCCG CCGCTATAAT TCTCCCGTTT GGATTTCCAA CTCCCCCATT
CAAGACATTT CTCTTGTAGA AGCCACAAGA ACCGGCTTCT TGAGGCTATT TGATTATATT CAGGGTAAGA ACAACTACAA
GCAGAAAATT GAGATGACAG CACCTGTGAT CTCTGAAGTA TCACCCAGTG ATGGACCTTT CTGTGAGTCC TCATTTGTTG
TGAGCTTCTA TGTGCCGAAA GAGAACCAAG CAAACCCGCC CCCTGCAAAG GGCCTTCATG TTCAAAGATG GAAGACTGTG
TATGTAGCAG TTAGACAGTT TGGTGGATTT GTCAAAGATT CTGAAGTTGG GGAGCAAGCT GCAGCCTTGA AGGCTAGTAT
TGCTGGAACC AAGTGGGGTG CTGCAGTTGA GAAGAGCAAG AGTGCTAATC ATACTTCTGT TTACACTGTT GCACAGTACA
ATGCCCCTTT TGAATATGAT AACAGGGTGA ATGAGATATG GTTCTTGTTT GACATTGAAG ATGGACAGCA AACCATGTGA
AAATGTATAC CAGACATAAG CTTTCGACAT GAAAGCAATA TGCAGAGTGC AAACTGATGT GTGAGGAGAC CTTGAATGGA
TGAATAAAGT GTTTCACGTT TTGCTAAAAC ACTGTTTTCT GATTGACTTG CTTTTGGGGT TCATCATAGC TATACACTTG
AAACTTTTCA ACATAAAAGC AATATGCAGA GTGGAG

>Vigan.UMG010600.01
ATGGCTGCTG CTACCATCGC ATGCAAGGTT TCACTGCTTT TGAGCCTCTT CTCTGTTTGG TTTGTGTATG TAAGTTCGGA
TTCTCTTCCG AATGTAGGGG CACTTCCCCC AACATGCCAG CGCATAGAAT GTCCCAGCTA TGATCTCATT CAGGTTGGAA
ATGGCTACGA AATCCGCCGC TATAATTCTC CCGTTTGGAT TTCCAACTCC CCCATTCAAG ACATTTCTCT TGTAGAAGCC
ACAAGAACCG GCTTCTTGAG GCTATTTGAT TATATTCAGG GTAAGAACAA CTACAAGCAG AAAATTGAGA TGACAGCACC
TGTGATCTCT GAAGTATCAC CCAGTGATGG ACCTTTCTGT GAGTCCTCAT TTGTTGTGAG CTTCTATGTG CCGAAAGAGA
ACCAAGCAAA CCCGCCCCCT GCAAAGGGCC TTCATGTTCA AAGATGGAAG ACTGTGTATG TAGCAGTTAG ACAGTTTGGT
GGATTTGTCA AAGATTCTGA AGTTGGGGAG CAAGCTGCAG CCTTGAAGGC TAGTATTGCT GGAACCAAGT GGGGTGCTGC
AGTTGAGAAG AGCAAGAGTG CTAATCATAC TTCTGTTTAC ACTGTTGCAC AGTACAATGC CCCTTTTGAA TATGATAACA
GGGTGAATGA GATATGGTTC TTGTTTGACA TTGAAGATGG ACAGCAAACC ATGTGA

>Vigan.UMG010600.01
MAAATIACKV SLLLSLFSVW FVYVSSDSLP NVGALPPTCQ RIECPSYDLI QVGNGYEIRR YNSPVWISNS PIQDISLVEA
TRTGFLRLFD YIQGKNNYKQ KIEMTAPVIS EVSPSDGPFC ESSFVVSFYV PKENQANPPP AKGLHVQRWK TVYVAVRQFG
GFVKDSEVGE QAAALKASIA GTKWGAAVEK SKSANHTSVY TVAQYNAPFE YDNRVNEIWF LFDIEDGQQT M*