GBrowse Details

Vigan.11G260000.01

Basic Information:
Name: Vigan.11G260000.01
Multiple alignment
Variant Information
Position: Chr11:37938263..37940821 (- strand)
Length: 2559
Functional Information:
Description: Similar to phospholipase A2-alpha-like. [XP_004513106.1, Cicer arietinum]
GO: Biological Process: phospholipid metabolic process (GO:0006644)
Biological Process: lipid catabolic process (GO:0016042)
Molecular Function: phospholipase A2 activity (GO:0004623)
Molecular Function: calcium ion binding (GO:0005509)
InterPro: Phospholipase A2 (IPR001211)
Phospholipase A2, active site (IPR013090)
Phospholipase A2 domain (IPR016090)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:1.30,2.77,38.84,14.44,85.50,51.67,49.33,37.09
Arabidopsis thaliana homolog: AT2G06925.1
Automatic updates:
Name: NM_001248551 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100500260 (LOC100500260), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001254447 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max phospholipase A2 homolog 3-like (LOC100797904), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr11:37938263..37938550 (- strand)
Length: 288
Type: three_prime_UTR
Position: Chr11:37938551..37938726 (- strand)
Length: 176
Type: CDS
Position: Chr11:37939894..37940019 (- strand)
Length: 126
Type: CDS
Position: Chr11:37940124..37940166 (- strand)
Length: 43
Type: CDS
Position: Chr11:37940285..37940413 (- strand)
Length: 129
Type: CDS
Position: Chr11:37940414..37940821 (- strand)
Length: 408
Type: five_prime_UTR

>Vigan.11G260000.01 class=Sequence position=Chr11:37938263..37940821 (- strand)
ACAAGATAAG GGTTTGTTTT ATTGTCACTA TTTTAAGATT TTTAATTTGA TGTGTTGACA TTGTAAAAGC TTTTTCTCTG
CAATGTCGTC ATATGCTGAG AGATTTCTGT GTATTGGCTG TGAAAATTGC ATAATGGGAA TGCAAAAAAG TTTGTAATGC
AGCTACAGAA TCATGAATTA AAATAATGCA AACAATATAG TCACGAGACG CTACAAAACA AATCACCTAC CTTCCACTCT
TTCTCTGAGC TGTGGCTGTG GCTCTGGTTG AGACTGTGCC TGCCATGTGT TCGAAACTTT GCTCTCAAAT CTAACACACC
TTTTCATCAT ATAAATCAGA GCCTTTAAAC AACACCAAGT TTCCCAAACT CAAAAGTAAG TTCACTTTTC CCCTTTGTTC
GTCCAAACAT GCTACCAACC TCCTCACTCA AGTATGTTCT TCTCCTCTTT TATTGTACTT TTTCCTTTAA CTTGTTAACC
ACTCCTGGCT GTGCCCTCAA CATAGGAGCT GAAACCACTG GAGTAGCTGT CTCTGTGGTA ACCTTCTTGT TTAATTTTTA
CAGCATTCAG TTCTAAACTA ATTAATTAAG CCTTAAATTA ACATATACAG CTAGTAGTTT TCCTAATTCT CTCTTTTTTT
ATTGTTCATC TGCAGAGCAA AGAGTGCAGC AAACAATGTG AGTCAAGTTT CTGCTCAGGT ACAAGACTGA TCCCATGAGT
GTTTTTCTTC TTACTTTTAA GATTTGGCTG ATTGGGTTAA GTTATAGTTT GTTTAATAAC ACTTTGGAGT TTGGAATGAC
AGTGCCTCCA TTATTGAGAT ATGGGAAATA CTGTGGACTT TTGTATAGTG GATGCCCTGG TGAAAAACCT TGTGATGGCC
TTGATGCTTG TTGTATGAAG CATGATCAAT GTGTGCAAGC CAAAAACAGT GAGTTCTCTG CTAGCTTTTT AATTAAGACA
TCTTACATTA TTTCTTTAAT TCAAGCAAGA TTTGCTTGAA TACTTCCATT ATCAGAACTA TCGGATCTGA CTCTTTGTCG
GTGGGGATCA TCACGTCCCT TCACAGACTA GATGTTCAAT TCAGTTTTTT CTTTTTGTAC CGTGTTTCTC TTTATTTTGA
TAGGTCCCGT ATTATCTTAA AACCCAGTTT TGAGTGATCC ATGATTACTT ATTTTGTACA TAAAAAAACT TGATCGGTAC
TAAATTAGGT CTAATGGTAA ATGAACCATT GAAATAAATA TGACAGGAAA TTGAATCAGT CAGTGCACTT GCTGTCGCAA
GCATATGGCT TAGAAAATCG TCAGGATGGA GAGGGTGAGA ATAAAAAATG GGATTTAGGA AGTGTGTAGT CTAGCTTCTT
GTTTACCTTC TCTTTTTCTC AAAGGAGGAA GTGGGTTTAA ACACAAATTC TTAAAAGTAA AATAAGTTTT TCAATGACCT
TATATCCCAA AAGTTAGAGT TTTCTCATCG AAATTAAAAA TAAAAATTTC ACTCGTTTCG AAGAAAAACA AAAGCAGAGT
TGGACCAAAC CAATGTTCAA AAGCAGGATA ACCCAAGGAA TTCTTTCCAA AGTCTTCAAT TAAAATGAAA TAAAGATGAC
GGTTGATGGG GATTCTTCAC TTAATTTTGC TTTTGATCAG TATACTAATG AATCCTGTAA ATGCCATGAA GTTGATGGAC
ATAAATAGAA ACTAATCGTC AACTTTCATC TATTTACTTC TTTTTTGAAT GACTGTCTAC TACCATAAGT TTGTAACGGA
GCTTCCTTAG CCAACTTAGT TTGCTTGATA ATGAAGACGA CCCTCATTGC ATCCCTTCTC CTATACTCAA ACAACAAGCA
TAAGAGGACA TTCGAGTGAT AATTATAACT AACAGCGATC TTTGTACCCC ACAAAAATGA TTATTGAACA ACTATTTTGT
CGAGTAGTGA AATCTTGTAG ACTTGTGTTA TTGAACAATA TAATCCAATT TCGGTTTATT GACTAAGTGG GTCGGTTTTC
CATCCTAGAA CAACTTTGTG TAAAATCAAC GCAAAAGAAC CTATTAGTTG AGTCGGGGAA TATGGTAACT ATTGATTAAT
GACTGTGTTA TGCAGATGAC TACCTAAGCC AAGAATGTAG CCAAGCATTG ATAAACTGTA TGAATAACTT CAAGAACTCG
AAGGCTCCTA CATTCAAAGG AAACACGTGC AATGTGAATG ATGTTATTGA AGTAATACAT GTTGTGATGG AAGCCGCTTT
ACTGGCTGGA GGGATTCTCC ACAAGCCCTA GAGAGTAATG TTGTTTATCT GTCTGTCTGT CTTATCAAGT CTCAGCTAAG
AATAGATATT CTCTCGTTCT TCCTATTGTT TGTAGTTGCT CTCTTACCAA ATTAATCAAG CTTCAATGCT TTATTTTATT
TGTTCACAAC CAATGTACTC TTTTCGCACA CTCTTATTAT TTAGGTAATG TATGTTTAGT CATTCTTGTG ATCCCCCACT
TCCGACAAAT GTACACTGCA AACACATTTT TTGTTCTTCT GTTTTCCTTG TGATGGAATT AGTTTCGCTT TTTGAAAAA

>Vigan.11G260000.01
ACAAGATAAG GGTTTGTTTT ATTGTCACTA TTTTAAGATT TTTAATTTGA TGTGTTGACA TTGTAAAAGC TTTTTCTCTG
CAATGTCGTC ATATGCTGAG AGATTTCTGT GTATTGGCTG TGAAAATTGC ATAATGGGAA TGCAAAAAAG TTTGTAATGC
AGCTACAGAA TCATGAATTA AAATAATGCA AACAATATAG TCACGAGACG CTACAAAACA AATCACCTAC CTTCCACTCT
TTCTCTGAGC TGTGGCTGTG GCTCTGGTTG AGACTGTGCC TGCCATGTGT TCGAAACTTT GCTCTCAAAT CTAACACACC
TTTTCATCAT ATAAATCAGA GCCTTTAAAC AACACCAAGT TTCCCAAACT CAAAAGTAAG TTCACTTTTC CCCTTTGTTC
GTCCAAACAT GCTACCAACC TCCTCACTCA AGTATGTTCT TCTCCTCTTT TATTGTACTT TTTCCTTTAA CTTGTTAACC
ACTCCTGGCT GTGCCCTCAA CATAGGAGCT GAAACCACTG GAGTAGCTGT CTCTGTGAGC AAAGAGTGCA GCAAACAATG
TGAGTCAAGT TTCTGCTCAG TGCCTCCATT ATTGAGATAT GGGAAATACT GTGGACTTTT GTATAGTGGA TGCCCTGGTG
AAAAACCTTG TGATGGCCTT GATGCTTGTT GTATGAAGCA TGATCAATGT GTGCAAGCCA AAAACAATGA CTACCTAAGC
CAAGAATGTA GCCAAGCATT GATAAACTGT ATGAATAACT TCAAGAACTC GAAGGCTCCT ACATTCAAAG GAAACACGTG
CAATGTGAAT GATGTTATTG AAGTAATACA TGTTGTGATG GAAGCCGCTT TACTGGCTGG AGGGATTCTC CACAAGCCCT
AGAGAGTAAT GTTGTTTATC TGTCTGTCTG TCTTATCAAG TCTCAGCTAA GAATAGATAT TCTCTCGTTC TTCCTATTGT
TTGTAGTTGC TCTCTTACCA AATTAATCAA GCTTCAATGC TTTATTTTAT TTGTTCACAA CCAATGTACT CTTTTCGCAC
ACTCTTATTA TTTAGGTAAT GTATGTTTAG TCATTCTTGT GATCCCCCAC TTCCGACAAA TGTACACTGC AAACACATTT
TTTGTTCTTC TGTTTTCCTT GTGATGGAAT TAGTTTCGCT TTTTGAAAAA 

>Vigan.11G260000.01
ATGCTACCAA CCTCCTCACT CAAGTATGTT CTTCTCCTCT TTTATTGTAC TTTTTCCTTT AACTTGTTAA CCACTCCTGG
CTGTGCCCTC AACATAGGAG CTGAAACCAC TGGAGTAGCT GTCTCTGTGA GCAAAGAGTG CAGCAAACAA TGTGAGTCAA
GTTTCTGCTC AGTGCCTCCA TTATTGAGAT ATGGGAAATA CTGTGGACTT TTGTATAGTG GATGCCCTGG TGAAAAACCT
TGTGATGGCC TTGATGCTTG TTGTATGAAG CATGATCAAT GTGTGCAAGC CAAAAACAAT GACTACCTAA GCCAAGAATG
TAGCCAAGCA TTGATAAACT GTATGAATAA CTTCAAGAAC TCGAAGGCTC CTACATTCAA AGGAAACACG TGCAATGTGA
ATGATGTTAT TGAAGTAATA CATGTTGTGA TGGAAGCCGC TTTACTGGCT GGAGGGATTC TCCACAAGCC CTAG

>Vigan.11G260000.01
MLPTSSLKYV LLLFYCTFSF NLLTTPGCAL NIGAETTGVA VSVSKECSKQ CESSFCSVPP LLRYGKYCGL LYSGCPGEKP
CDGLDACCMK HDQCVQAKNN DYLSQECSQA LINCMNNFKN SKAPTFKGNT CNVNDVIEVI HVVMEAALLA GGILHKP*