GBrowse Details

Vigan.11G255800.01

Basic Information:
Name: Vigan.11G255800.01
Multiple alignment
Variant Information
Position: Chr11:37760542..37762703 (+ strand)
Length: 2162
Functional Information:
Description: Similar to Uncharacterized protein. [C6SXR3, Glycine max]
GO: Biological Process: transport (GO:0006810)
Biological Process: protein transport (GO:0015031)
Molecular Function: protein transporter activity (GO:0008565)
InterPro: Longin-like domain (IPR011012)
Adaptor protein complex, sigma subunit (IPR016635)
AP complex, mu/sigma subunit (IPR022775)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:11.02,6.91,16.62,17.65,24.70,22.74,30.05,22.61
Arabidopsis thaliana homolog: AT2G19790.1
Automatic updates:
Name: NM_001249806 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100306047 (LOC100306047), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr11:37760542..37760592 (+ strand)
Length: 51
Type: five_prime_UTR
Position: Chr11:37760593..37760733 (+ strand)
Length: 141
Type: CDS
Position: Chr11:37760878..37760964 (+ strand)
Length: 87
Type: CDS
Position: Chr11:37761853..37761921 (+ strand)
Length: 69
Type: CDS
Position: Chr11:37762008..37762142 (+ strand)
Length: 135
Type: CDS
Position: Chr11:37762143..37762703 (+ strand)
Length: 561
Type: three_prime_UTR

>Vigan.11G255800.01 class=Sequence position=Chr11:37760542..37762703 (+ strand)
GTGTTGTTTG TTGAGATTTG TAGAGAAAGA TTGAATTAGG GCAGAATCAG AATGGGGATC CGATTCGTGT TGATGGTGAA
CAAGCAAGGC CAAACGCGCC TTGCTCAGTA CTACGAATAC CTCACTCTCG AAGAGCGTCG AGCTCTCGAA GGTGAAATCG
TTCGTAAATG TCTCGCCCGC AACGAACAAC AGGTTCCATT TCAATCTTAT TTAGATCCAC AATTTAACTA TTCAGATCCA
TCTTCTGTAT TCAGCATTCG CTTTATGCGC GATTCAACTT TCTGATTTTG AATTCTCACT CTTAAATTGT TTATCGTCGT
TTTTGATGAT GGACAGTGTT CCTTTGTTGA GCATCGCAAC TACAAAATAG TGTACAGGCG CTACGCCTCC TTGTTTTTCC
TCGTTGGAGT CGACGATGAC GAGGTAAATT AAAAAGTTCC TTTCTCTACG CCTTATTTTC ATCGAAAGAC AGTGGAATTT
GAAGTTCGTG TGAAAACTAA GCAGTTAAGT GTCTTCTTAA CATAAATGAA TTCTTTGAAA TTGAGAGGAT ATTTCAGTTT
GCTGTAAAAG TAATGTTAGA GTGGCGAGTG TTAGTGAAGA AATCTGGAAT TAATTGAACA TAAATGAAAG ATGTTATGCT
TTAAGGTGTT GATGTGATGT GGCGTCAATT TCACTTATGA TTTGTTCATC ACATGTTGAA TGATATTTCC TCAGTATTTT
ACTTGCTCGT ATCCCATAAC AGTGATCAAC CTGATTATAT TGATCTGGTA TGCATCTTTA CCGGAATTAT GTGAATATCA
CTTGGATTTA GTTCCTCTAA AGCGAGTTAA GGGTGAAACA AGTAGTAATC GTTGCCGTTG ATGAGAAATT TGACCAATAC
ATTTATGATT TGTTGTGCAT GTAAATGTTT TTCTTTTGCT GGTTGATTAT GCATGTACTG TAAAGTTGAC CATTAGTTTT
CTCATCAATG ACTTTGATTT AGTTTATCTG AAGTGATTAT ATATATATAT ATATATATCA CTTGGCTTTA ACTCCTCTAA
GGTGAGTAAG GATAAAATAA GTAATCAAAG TTGTCGATGA GAAAATTAAT GGTTGACGTT GCAACATGCT CTTCTTGGTT
TCTTATGCAT GTATATGTAA TATAGGCTGT TGACGTTTTT ATTCATGACT GGAATTACTT ACTTACTTTA TCTTCTAAAG
TGAGTTGTTT ATGTTTAGAA GAGTGGGATC CATGTCACTC TTGTGTAAAC CATGGGAAAT ATTTAGAATC TTCATGACTT
CTTATTCGAC CTTCTGCTGA TAATGATGCA GAATGAGCTT GCTATTTTGG AATTTATACA CCTCTTGGTT GAAACAATGG
ATCGTCATTT TGGCAATGTG GTATGTCTCG ATTTAGAAAC TGATCTTCCC TGTTTTGAAG GTATATTCCG GTAATTTACT
TATTTCTCCT TCACTTTTAC TTGCAGTGCG AGCTAGATAT TATGTTCCAT TTAGAAAAGG CGCATTTTAT GTTGGAAGAA
ATGGTTATGA ATGGTTGTAT TGTGGAGACA AACAAATCAA ATATTCTGAC TCCAATTCAG CTGATGGATA AAACATCTTG
AAGGAGAAAA AAAGAAATAT GCCCGGCTTT TGATGTATGA ATATCGTTCT GTGTACAATA GACAAGATAA TCTATAATTT
TCAGTATGAA GGAAAATTCG CGTGTAACTT TCTGTCTTGT TTTTCTCACA CCCCTTGTAT GAATGATTAT GAACTAGTTT
TTTTTTTTTT TTTTTTCAAA TGGCATTTGG CATTAGAAAA ATACCCTGAT AATGGAAATT ATAAATTTCA AATTAAGATT
GCACGTTGAC CGTTCCGACC AGTTGAGGTG TAGTTATGTA ACATACGCAA TAAATTTTCC AGCCGGATGT AGGAGTCTAA
AGATTATCTA TTTTATTTTA GGGTTAATTG CATGAACATG GCTTTCAAAT GGACTTTCCT ATAGTTGAAT ATGAAAGGCT
CGAGCTACTA AATGCTAAAG CCATGACAAT CGTTCAGAGT AACATTCTAA AGAGGACAAG CTGCAATGTT TTATAATTGT
ATTTTTAAAT AATTAAAAAA GGTTTCGGAT AAATGTATAG AAAGTGTTCT TATAATTTCA CGAATTCTGA AGAGTGATGA
GA

>Vigan.11G255800.01
GTGTTGTTTG TTGAGATTTG TAGAGAAAGA TTGAATTAGG GCAGAATCAG AATGGGGATC CGATTCGTGT TGATGGTGAA
CAAGCAAGGC CAAACGCGCC TTGCTCAGTA CTACGAATAC CTCACTCTCG AAGAGCGTCG AGCTCTCGAA GGTGAAATCG
TTCGTAAATG TCTCGCCCGC AACGAACAAC AGTGTTCCTT TGTTGAGCAT CGCAACTACA AAATAGTGTA CAGGCGCTAC
GCCTCCTTGT TTTTCCTCGT TGGAGTCGAC GATGACGAGA ATGAGCTTGC TATTTTGGAA TTTATACACC TCTTGGTTGA
AACAATGGAT CGTCATTTTG GCAATGTGTG CGAGCTAGAT ATTATGTTCC ATTTAGAAAA GGCGCATTTT ATGTTGGAAG
AAATGGTTAT GAATGGTTGT ATTGTGGAGA CAAACAAATC AAATATTCTG ACTCCAATTC AGCTGATGGA TAAAACATCT
TGAAGGAGAA AAAAAGAAAT ATGCCCGGCT TTTGATGTAT GAATATCGTT CTGTGTACAA TAGACAAGAT AATCTATAAT
TTTCAGTATG AAGGAAAATT CGCGTGTAAC TTTCTGTCTT GTTTTTCTCA CACCCCTTGT ATGAATGATT ATGAACTAGT
TTTTTTTTTT TTTTTTTTCA AATGGCATTT GGCATTAGAA AAATACCCTG ATAATGGAAA TTATAAATTT CAAATTAAGA
TTGCACGTTG ACCGTTCCGA CCAGTTGAGG TGTAGTTATG TAACATACGC AATAAATTTT CCAGCCGGAT GTAGGAGTCT
AAAGATTATC TATTTTATTT TAGGGTTAAT TGCATGAACA TGGCTTTCAA ATGGACTTTC CTATAGTTGA ATATGAAAGG
CTCGAGCTAC TAAATGCTAA AGCCATGACA ATCGTTCAGA GTAACATTCT AAAGAGGACA AGCTGCAATG TTTTATAATT
GTATTTTTAA ATAATTAAAA AAGGTTTCGG ATAAATGTAT AGAAAGTGTT CTTATAATTT CACGAATTCT GAAGAGTGAT
GAGA

>Vigan.11G255800.01
ATGGGGATCC GATTCGTGTT GATGGTGAAC AAGCAAGGCC AAACGCGCCT TGCTCAGTAC TACGAATACC TCACTCTCGA
AGAGCGTCGA GCTCTCGAAG GTGAAATCGT TCGTAAATGT CTCGCCCGCA ACGAACAACA GTGTTCCTTT GTTGAGCATC
GCAACTACAA AATAGTGTAC AGGCGCTACG CCTCCTTGTT TTTCCTCGTT GGAGTCGACG ATGACGAGAA TGAGCTTGCT
ATTTTGGAAT TTATACACCT CTTGGTTGAA ACAATGGATC GTCATTTTGG CAATGTGTGC GAGCTAGATA TTATGTTCCA
TTTAGAAAAG GCGCATTTTA TGTTGGAAGA AATGGTTATG AATGGTTGTA TTGTGGAGAC AAACAAATCA AATATTCTGA
CTCCAATTCA GCTGATGGAT AAAACATCTT GA

>Vigan.11G255800.01
MGIRFVLMVN KQGQTRLAQY YEYLTLEERR ALEGEIVRKC LARNEQQCSF VEHRNYKIVY RRYASLFFLV GVDDDENELA
ILEFIHLLVE TMDRHFGNVC ELDIMFHLEK AHFMLEEMVM NGCIVETNKS NILTPIQLMD KTS*