GBrowse Details

Vigan.11G249900.01

Basic Information:
Name: Vigan.11G249900.01
Multiple alignment
Variant Information
Position: Chr11:37249893..37252061 (+ strand)
Length: 2169
Functional Information:
Description: Similar to Uncharacterized protein. [K7K3W3, Glycine max]
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.05,0.17,0.02,0.00,3.32,0.00,4.24,0.82
Arabidopsis thaliana homolog: AT2G20080.1
Automatic updates:
Name: NM_001255780 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100804813 (LOC100804813), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr11:37249893..37250036 (+ strand)
Length: 144
Type: five_prime_UTR
Position: Chr11:37250037..37250264 (+ strand)
Length: 228
Type: CDS
Position: Chr11:37250381..37250494 (+ strand)
Length: 114
Type: CDS
Position: Chr11:37251160..37251227 (+ strand)
Length: 68
Type: CDS
Position: Chr11:37251372..37251423 (+ strand)
Length: 52
Type: CDS
Position: Chr11:37251559..37251675 (+ strand)
Length: 117
Type: CDS
Position: Chr11:37251676..37252061 (+ strand)
Length: 386
Type: three_prime_UTR

>Vigan.11G249900.01 class=Sequence position=Chr11:37249893..37252061 (+ strand)
ATCTGATCCA GCGATGCAAT TATTCCTGAG TTTTGGTAGA AGCTTAAAAG AGACCACACG AGATCTCTGA TTTCCCAGCC
AGAAAATTAA GTGGAAGCTG TTCTTGAGGG ATTTGGCAAC ACAGAAAAAG AGAAGAGAAG AAGCATGGAT GGCAGTTTTT
TTGGAGAGGC AAACATGGGA AATGAAAGAG TAAGTGGTTC TTCTTCTTCT TCTTCTTCAA GGAAAGGGAA GAAGAACAAT
CAAGAGAAGC CAAAGCAACC ACAGAGAGGA TTAGGAGTTG CTCAATTGGA GAAAATCAGA TTACATGGTC AAATGGGTTG
TGGTGCCTAT CATCCTCCTC TGCACGCTTC TTACCCATCT AACTTCAACA ATGTAAGACC CTTTTTCTTC TCTCTCAAAA
TCTCTCAAAA ACTGCCACTG TTTTTGGCTT GGATCTTCGG AATTCCAATA TTGGGGGGTT TTGTTCATTG ATCCTGGTCA
ACATGCAGGA AGATCCAAGG GTGCAAACAC CCTATTCATC AGTACCATCT TCATCATCTT TTTCTTACTC CTCCTCATCT
ACTTCATACT CAGCTTCATA TGGCTTCCAA CCCAACATTG TGGTATGTGT AGTTTTTGCC TTTTTCTTCA ACCGATCCCA
ATTGATTTTA CACTTCTACA GACACACTAT AGCTTTGTTT GTACACATAT GTTTAACTTA TTCGTTTTCG GTTTTCTTTC
TATGAGTAAA CATCTTCCAC ACATATTTTC ATAATAATTG TCAGTAACTA CAACTGAAAG CAAATATATA TATGCAAGTA
GACTCAAGTT ATCCCCAAAG CAATTTGATT AACCATTGTT TTATTTTCCT GGAAATGGTT GGCATGATAC TTATCTTCTT
ATTATATATT GGAAAGTATA TATATAGATA GATAGCATAT ATATAACCCT AGAATCTGAA TTCATTTTCT CCTGTATATA
TGTTTGGTTG AATGTGAAAG TGCAAGGTTA GTGCTAATTA GGGTTGTGTG TGGGGTGTTC TGCTAATTGA AAAGCATCTG
GGCTACAAAA AGTTATCAAA AGAACCAAAA AAATGTCATT CAAATCATCT CTGTCGTTAC AGTTTTGCTG ATTACTTTCA
CATCTAATGT TGCAAAAACG TACAAGTAAT AATTCTTCTA CTTCCAACAT GTCCATGTGA GTGTAGTAAC ACACACACAT
ATATATATTG AAAGAGTGAG TTTGGATCGT GGATCTTGAA ATTGGACAAC ACTGTTTGCC TGTGCAGATG TCCCTACCCG
AGTATGAAAG AACAAGCATT AGATATGGAG ATTCTCAGCC AACTAATACT GCAAGGTACT TCAACCTTTC AGCCCTATTA
GACCCTTTTG GTTGATATGA CTAAACTGCA AATGTGTTTA TACTTGTTGG ATTTTTGTTC TTTATCTTGA AGAATTTCTA
GACTGATATA TATATGTTAA ATTCTTTGTT GAAAACCAGA TGGGAGCATG CCAATTCCAC TGCTCAAACA AGACCTTTAC
TTAACCTATA TGTAAGCAAC CTTTTCAAAT TGTATATCTC ATTTGATATT CTGATCATAG AACATATATT TGGCTTGGCA
CCCAATAGAG AATCCATCAT TAAATTCACA ATGACCTTGA TTATGGTGGT TTCTATAATC ATATAGGACT CACAACACAT
AGATACCAAG AAGCATAGAA GTGGTTCAGT GGGCGCAAGC AGTCAGAACT CTGAATCAAG TGACACTCAA GAACCAGATT
TGGAGCTAAG ACTATCTCTT TGATCTGCTG CCACTGAGTG GCAAATTCTA GTAATTGTAA TGCTTTTGTT TACAATTATG
AATTGAAAAA GCACATGAAC AAGCCAATGT GTTTGTTTTA AAGTTTCATT GGGATCATAC TCTTGTGTCA TGGAAGATAT
AGATATTGAC TACTCTTTGC ATAAAAGCAA TGCAAACTTC TCTTTTAACG TAAATCATCA AAGAAACTCA AGAGAAGTTA
TTTTTATTAT AGCTAGCTCT AATTTTATTT GGTTTTCTCT TAGTTTGGAA TCTTTCATGC ATTCAAGGCT CCATATGTGA
CAAATGGTAC TGAAATGATC ATGAAAAGAT CATACGGAAC TGAATATCTT CTTCATTTTC TTTTCTTCAA ATTTGGATGC
ATGCTGTAG

>Vigan.11G249900.01
ATCTGATCCA GCGATGCAAT TATTCCTGAG TTTTGGTAGA AGCTTAAAAG AGACCACACG AGATCTCTGA TTTCCCAGCC
AGAAAATTAA GTGGAAGCTG TTCTTGAGGG ATTTGGCAAC ACAGAAAAAG AGAAGAGAAG AAGCATGGAT GGCAGTTTTT
TTGGAGAGGC AAACATGGGA AATGAAAGAG TAAGTGGTTC TTCTTCTTCT TCTTCTTCAA GGAAAGGGAA GAAGAACAAT
CAAGAGAAGC CAAAGCAACC ACAGAGAGGA TTAGGAGTTG CTCAATTGGA GAAAATCAGA TTACATGGTC AAATGGGTTG
TGGTGCCTAT CATCCTCCTC TGCACGCTTC TTACCCATCT AACTTCAACA ATGAAGATCC AAGGGTGCAA ACACCCTATT
CATCAGTACC ATCTTCATCA TCTTTTTCTT ACTCCTCCTC ATCTACTTCA TACTCAGCTT CATATGGCTT CCAACCCAAC
ATTGTGATGT CCCTACCCGA GTATGAAAGA ACAAGCATTA GATATGGAGA TTCTCAGCCA ACTAATACTG CAAGATGGGA
GCATGCCAAT TCCACTGCTC AAACAAGACC TTTACTTAAC CTATATGACT CACAACACAT AGATACCAAG AAGCATAGAA
GTGGTTCAGT GGGCGCAAGC AGTCAGAACT CTGAATCAAG TGACACTCAA GAACCAGATT TGGAGCTAAG ACTATCTCTT
TGATCTGCTG CCACTGAGTG GCAAATTCTA GTAATTGTAA TGCTTTTGTT TACAATTATG AATTGAAAAA GCACATGAAC
AAGCCAATGT GTTTGTTTTA AAGTTTCATT GGGATCATAC TCTTGTGTCA TGGAAGATAT AGATATTGAC TACTCTTTGC
ATAAAAGCAA TGCAAACTTC TCTTTTAACG TAAATCATCA AAGAAACTCA AGAGAAGTTA TTTTTATTAT AGCTAGCTCT
AATTTTATTT GGTTTTCTCT TAGTTTGGAA TCTTTCATGC ATTCAAGGCT CCATATGTGA CAAATGGTAC TGAAATGATC
ATGAAAAGAT CATACGGAAC TGAATATCTT CTTCATTTTC TTTTCTTCAA ATTTGGATGC ATGCTGTAG

>Vigan.11G249900.01
ATGGATGGCA GTTTTTTTGG AGAGGCAAAC ATGGGAAATG AAAGAGTAAG TGGTTCTTCT TCTTCTTCTT CTTCAAGGAA
AGGGAAGAAG AACAATCAAG AGAAGCCAAA GCAACCACAG AGAGGATTAG GAGTTGCTCA ATTGGAGAAA ATCAGATTAC
ATGGTCAAAT GGGTTGTGGT GCCTATCATC CTCCTCTGCA CGCTTCTTAC CCATCTAACT TCAACAATGA AGATCCAAGG
GTGCAAACAC CCTATTCATC AGTACCATCT TCATCATCTT TTTCTTACTC CTCCTCATCT ACTTCATACT CAGCTTCATA
TGGCTTCCAA CCCAACATTG TGATGTCCCT ACCCGAGTAT GAAAGAACAA GCATTAGATA TGGAGATTCT CAGCCAACTA
ATACTGCAAG ATGGGAGCAT GCCAATTCCA CTGCTCAAAC AAGACCTTTA CTTAACCTAT ATGACTCACA ACACATAGAT
ACCAAGAAGC ATAGAAGTGG TTCAGTGGGC GCAAGCAGTC AGAACTCTGA ATCAAGTGAC ACTCAAGAAC CAGATTTGGA
GCTAAGACTA TCTCTTTGA

>Vigan.11G249900.01
MDGSFFGEAN MGNERVSGSS SSSSSRKGKK NNQEKPKQPQ RGLGVAQLEK IRLHGQMGCG AYHPPLHASY PSNFNNEDPR
VQTPYSSVPS SSSFSYSSSS TSYSASYGFQ PNIVMSLPEY ERTSIRYGDS QPTNTARWEH ANSTAQTRPL LNLYDSQHID
TKKHRSGSVG ASSQNSESSD TQEPDLELRL SL*