GBrowse Details

Vigan.11G247400.01

Basic Information:
Name: Vigan.11G247400.01
Multiple alignment
Variant Information
Position: Chr11:37040394..37044170 (+ strand)
Length: 3777
Functional Information:
Description: Similar to Continuous vascular ring family protein. [B9ILN4, Populus trichocarpa]
InterPro: Protein of unknown function DUF502 (IPR007462)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:58.74,27.91,15.38,20.68,16.37,16.75,18.80,16.57
Arabidopsis thaliana homolog: AT2G20120.1
Automatic updates:
Name: NM_001251314 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100305375 (LOC100305375), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr11:37040394..37040579 (+ strand)
Length: 186
Type: five_prime_UTR
Position: Chr11:37040580..37040726 (+ strand)
Length: 147
Type: CDS
Position: Chr11:37041236..37041288 (+ strand)
Length: 53
Type: CDS
Position: Chr11:37042016..37042125 (+ strand)
Length: 110
Type: CDS
Position: Chr11:37042462..37042629 (+ strand)
Length: 168
Type: CDS
Position: Chr11:37042717..37042814 (+ strand)
Length: 98
Type: CDS
Position: Chr11:37043156..37043282 (+ strand)
Length: 127
Type: CDS
Position: Chr11:37043833..37043930 (+ strand)
Length: 98
Type: CDS
Position: Chr11:37043931..37044170 (+ strand)
Length: 240
Type: three_prime_UTR

>Vigan.11G247400.01 class=Sequence position=Chr11:37040394..37044170 (+ strand)
TTCAAAGACA GATAGAATTA AAATATATTT TAGGAAAATA AAATTATAAT AGAAAAATTA GAAAAGGAAG CGAAGACCAA
ATGTGAATTA CAGCTTTGGA CTCTCCGAAG AACGCAAGGA AGAACGGAGA GTTTCAGAAA CTTCAGAAAG GTTTTTGCGT
TTTGAGTTAC CAAACGCCGT CGTTTAATGG GCGATGACAA ATCCTCCATG GCCATCACCA CTAGAGACAG AGATCGAGAG
CTTCTCATAC CCGTCGCCGA CACCGCCGTC CCCGCCGCCT CACTTTCCCC CAAGCCACCC TCGTCGTCGT CCGCGCATCA
TGCTGGACGC GAGGTGATCT CTTTGTTCAC TGTTTTTCAT TTAGGGTTTT CAATTCGCCA CTCGTTTCCC CTTTTTTATG
CAATTCGCTC AACCTGGACT GTTTTGAATG TGTTGGGTTG GGGGATTTAC TTTAAAGTTT TTACTTTGAC TTGAATTGTG
CTTTTTTGGG GACGAACCAG TTAGGCATTG AGGAGTTAAT AGTGTCTTGT TGAGAGCAGT GTGTGGCTTC AAGAGAATGA
AGATTTAAGT GAATGATAGT CCGAGTTTGT TTCATGAATC ATCGAATTGT ATTCAAACTG AAAAGTGATA GCAAAATTGT
AATAAAGTGA AGCCATCTAG TCCTAACTAT TACACCTAAG TAGAAAGAAA TTTAGGTGCA TGTATTGGGT GTAAATATTC
ATTTTTGTTT TCGTGGTTTT GAATACCAGA GAAGAGTTAT AGGTTGCATA GGATAATTTG CTATACCTTC TTAACTATTT
ATCTGACAGA TTGCTCTTTT TTCCTGTTTC TGTCATTTGT AGACTTTTTT CAAAGTTATT AGAAGCTGGG CATCAAAAAA
GTTCATGACA GGATGGTGCG TGATTCTTCT GTCCATCATC TTGATATTTA ATCATTGATA CATGAGATGT ATTGCATTTT
CCTACACATG ATACTGTTTA TGCTTTCTGA ATGAATTTGC CTCGTGCATT CTTTGAGATG CTGGTTTATT TTCATAATTT
TTTATCTTCA CTTTATTTCT ACATGCATAT TTTCTATTTT TTATGTTGTA TCGCAAAAGG AAAATTACAG AGCATAATAG
TTGATTTCTG AATATGGGGA AGCTCTTCTT TTCTACATTA CGGGAGGATA TATATTCCTG GTGATATTAC AAGAGTCCAA
GTGATATCCT TCTTATTGGG AAATTTTAAA TGAATGAAAA TCCTGGGTTC TATATTCTGA AGACTGTAAA TCTCAAAGTT
GCTTACCGGG CACCAGATAC TATTATGCAC TCTTTTATGA CAATTCTCAA CACAAGTGCC GCAAAAGTAT GTAACAATCT
CATTGCTATC TTGTCACTTT ATTTGAACTA AAAGGACAAC ATGATGGAGA AATAATAGGT TTTAAGTCAT TAATGATGAT
TTAATATGGA TGCTTGCTCC TAAGAAGAAT ACGTGTTCTT GTCAGTATAC CTCTCACTGC TTGTACATAT CTATGGTTTG
CTGAATTATG TTTGTTTACC TTATTTGTTT GGATCAGTGG TCGCATTGTC CTTTTCTAAT TTCCAAAGTC CTTTGCTTGT
CTCACAGTTA GTTCTTTTGC AGTGTCATTC TCTTTCCAAT TGCTATCACC TTCTATATAA CATGGTGGTT CATTCATTTT
GTGGATGGAT TTTTCTCTCC TATCTATGCT CAACTTGGAA TTGATATTTT TGGTAAGTGA TTATGTTTTA TGGTATTTCA
CAATTAACTT TTACTCACGC AAAGATTGTA ACAAAGTTCG TTTTTATACA TCAACAACTT TTTCTTCTGG CAGGAATTGT
TTTAAGATTT TTTTTTTTCA CTTGAGACTG CTAAGATCAT GGTTATTAAG TATTCTATTG TATTTGATGC ATGTTTAAGT
GAATTTATAT TCGTAATATT TCTATATTTG TTGTCTTCTA TATATTTTGG CCTGGAGTGA GTTGGATTAT TTCATTGAGC
GGCAAAACCT TTTTGAATTG ATTTTATTGT TTGAAACTTG TTAACTCTAT TTGCTAATAT TTGGTCAGGT CTTGGTTTCA
TAACTTCCAT AACTTTCATC TTCTTGGTTG GGGTTTTCAT GTCATCATGG TTGGGTGCAT CTGTCCTGGG CCTTGGGGAG
TGGTTTATCA AGCGAATGCC ACTTGTTCGT CATATTTATA ATGCCTCCAA GCAGATCAGT GCTGCTATCT CTCCAGGTAT
GTGTTTGCCA ACATGTAACT CTTAATTGGT ATGAGTGAAA AATTGGATGA GAACAGTTTA TGCTAACATG CATATTGTCA
CAGATCAAAA TACACAAGCC TTCAAAGAAG TAGCTATCAT ACGGCATCCA CGTATTGGAG AATATGCATT TGGATTCATC
ACCTCATCTG TTACTCTTCA GGTCTCTGAA ACTTCGATGT TTAGAGTATT TTAAGTTAAG AGCATTTACT AGCATCATTT
CTTGAGTCTG AGTTTGATTA TAATTCCCTG GTGTCACTTA GTGCTATTCC TTGTCTATGA TCCCATTATT ATGATGTTAT
TTGATATTTA ATTTAGCATT TTTTGTGTTC TTTTTCAATC ATTGTGTATC TTAATACTGT ACATACAATA AGCTAGGGAA
AATTTCATTA TTGGTAAGCA GATGATGCTT CATGTTTGAT GAAACTGGTT CATGGTCAAT TCATGATGAT ATCTGTGTTT
ACAAAGATTT TACACAGTAT TAATTAAATA TTTGTTTTAC AGAACTATTC TGGGGACGAG GAGTTATACT GTGTCTATGT
TCCTACAAAT CATCTCTATA TCGGTGATAT ATTTCTAGTC AACAGCAAAG ATGTCATTAG GCCAAACTTA TCAGTTCGAG
AAGGAATTGG TGAGTGATTC TTTTTCATTT ACTTGAAGTC TCAAATTACA GAGGTCAAAG CAGGCATATT TATTTTGCAC
TGTGGTAATA TGGTTCTGTT ACAAATACCA AGTTCCCTTC TGTGACTCTC TCCGGTCATG GTATACCAAT ATTTGAACTA
ACGACTTTTG GTCTTGCAAA TTTGGAAGAT AAATTTCAGA AAGGATAGTG GCTAAACGAG TAATGATAGT TATCTACACT
TAGTCACATA TTGTAAACAT ACCATTTTGG TTAATTTTTT GTATGACACT CCGGTCCTAA CTCATAATAT ACACAGCATA
GTGGCTAGAT TCTGTAAGTA CCCAAACATT ATACGTGTGT CTATCATTTT CTAGGCTAGC TTTTGTACTT CAATTTGCAG
GCAATGAATG TGTATACAAG TGTCTCTGTG TGTGTGTAAT TTGTTTTTCT TGGGATATGA CCTACTCTTA AAGATTCATC
TCTAAAAGGC ATAATAATAA GAATAATGAA GAAGAAGAAT AACAATAATT CATTCCACTA ATTTGTTTTG AAATTGCAGA
AATTGTTGTT TCGGGAGGCA TGTCAATGCC ACAGATCCTA TCAACGGTAG ATTCACGCAT CATACCAGGG GAGATAAGTA
GAATCAACAG AAGCTGAGAG TTAAGAGCAG GGTAGTTATT CATGTTTCTG TTCCTTGGTG TCATATGAAG CCATCAGAAT
GACAATCCAA TCATTGTGTT GCGGATGCAG TATTGAATTT ACGTGATTGA TTGCTGAGAA AGTGAGACTC TGATGGCTTG
TGTAACATTG GTTTGTGTAA GAATGTAGAG TTTAGCATTT ATTTGACAAC CATACAAAAT TCTAGTGTGC TTGGATTCTC
GGATTTTTAC CTGTGTA

>Vigan.11G247400.01
TTCAAAGACA GATAGAATTA AAATATATTT TAGGAAAATA AAATTATAAT AGAAAAATTA GAAAAGGAAG CGAAGACCAA
ATGTGAATTA CAGCTTTGGA CTCTCCGAAG AACGCAAGGA AGAACGGAGA GTTTCAGAAA CTTCAGAAAG GTTTTTGCGT
TTTGAGTTAC CAAACGCCGT CGTTTAATGG GCGATGACAA ATCCTCCATG GCCATCACCA CTAGAGACAG AGATCGAGAG
CTTCTCATAC CCGTCGCCGA CACCGCCGTC CCCGCCGCCT CACTTTCCCC CAAGCCACCC TCGTCGTCGT CCGCGCATCA
TGCTGGACGC GAGACTTTTT TCAAAGTTAT TAGAAGCTGG GCATCAAAAA AGTTCATGAC AGGATGTGTC ATTCTCTTTC
CAATTGCTAT CACCTTCTAT ATAACATGGT GGTTCATTCA TTTTGTGGAT GGATTTTTCT CTCCTATCTA TGCTCAACTT
GGAATTGATA TTTTTGGTCT TGGTTTCATA ACTTCCATAA CTTTCATCTT CTTGGTTGGG GTTTTCATGT CATCATGGTT
GGGTGCATCT GTCCTGGGCC TTGGGGAGTG GTTTATCAAG CGAATGCCAC TTGTTCGTCA TATTTATAAT GCCTCCAAGC
AGATCAGTGC TGCTATCTCT CCAGATCAAA ATACACAAGC CTTCAAAGAA GTAGCTATCA TACGGCATCC ACGTATTGGA
GAATATGCAT TTGGATTCAT CACCTCATCT GTTACTCTTC AGAACTATTC TGGGGACGAG GAGTTATACT GTGTCTATGT
TCCTACAAAT CATCTCTATA TCGGTGATAT ATTTCTAGTC AACAGCAAAG ATGTCATTAG GCCAAACTTA TCAGTTCGAG
AAGGAATTGA AATTGTTGTT TCGGGAGGCA TGTCAATGCC ACAGATCCTA TCAACGGTAG ATTCACGCAT CATACCAGGG
GAGATAAGTA GAATCAACAG AAGCTGAGAG TTAAGAGCAG GGTAGTTATT CATGTTTCTG TTCCTTGGTG TCATATGAAG
CCATCAGAAT GACAATCCAA TCATTGTGTT GCGGATGCAG TATTGAATTT ACGTGATTGA TTGCTGAGAA AGTGAGACTC
TGATGGCTTG TGTAACATTG GTTTGTGTAA GAATGTAGAG TTTAGCATTT ATTTGACAAC CATACAAAAT TCTAGTGTGC
TTGGATTCTC GGATTTTTAC CTGTGTA

>Vigan.11G247400.01
ATGGGCGATG ACAAATCCTC CATGGCCATC ACCACTAGAG ACAGAGATCG AGAGCTTCTC ATACCCGTCG CCGACACCGC
CGTCCCCGCC GCCTCACTTT CCCCCAAGCC ACCCTCGTCG TCGTCCGCGC ATCATGCTGG ACGCGAGACT TTTTTCAAAG
TTATTAGAAG CTGGGCATCA AAAAAGTTCA TGACAGGATG TGTCATTCTC TTTCCAATTG CTATCACCTT CTATATAACA
TGGTGGTTCA TTCATTTTGT GGATGGATTT TTCTCTCCTA TCTATGCTCA ACTTGGAATT GATATTTTTG GTCTTGGTTT
CATAACTTCC ATAACTTTCA TCTTCTTGGT TGGGGTTTTC ATGTCATCAT GGTTGGGTGC ATCTGTCCTG GGCCTTGGGG
AGTGGTTTAT CAAGCGAATG CCACTTGTTC GTCATATTTA TAATGCCTCC AAGCAGATCA GTGCTGCTAT CTCTCCAGAT
CAAAATACAC AAGCCTTCAA AGAAGTAGCT ATCATACGGC ATCCACGTAT TGGAGAATAT GCATTTGGAT TCATCACCTC
ATCTGTTACT CTTCAGAACT ATTCTGGGGA CGAGGAGTTA TACTGTGTCT ATGTTCCTAC AAATCATCTC TATATCGGTG
ATATATTTCT AGTCAACAGC AAAGATGTCA TTAGGCCAAA CTTATCAGTT CGAGAAGGAA TTGAAATTGT TGTTTCGGGA
GGCATGTCAA TGCCACAGAT CCTATCAACG GTAGATTCAC GCATCATACC AGGGGAGATA AGTAGAATCA ACAGAAGCTG
A

>Vigan.11G247400.01
MGDDKSSMAI TTRDRDRELL IPVADTAVPA ASLSPKPPSS SSAHHAGRET FFKVIRSWAS KKFMTGCVIL FPIAITFYIT
WWFIHFVDGF FSPIYAQLGI DIFGLGFITS ITFIFLVGVF MSSWLGASVL GLGEWFIKRM PLVRHIYNAS KQISAAISPD
QNTQAFKEVA IIRHPRIGEY AFGFITSSVT LQNYSGDEEL YCVYVPTNHL YIGDIFLVNS KDVIRPNLSV REGIEIVVSG
GMSMPQILST VDSRIIPGEI SRINRS*