GBrowse Details

Vigan.11G246600.01

Basic Information:
Name: Vigan.11G246600.01
Multiple alignment
Variant Information
Position: Chr11:36980694..36984680 (- strand)
Length: 3987
Functional Information:
Description: Similar to Uncharacterized protein. [V7CEE3, Phaseolus vulgaris]
GO: Molecular Function: protein binding (GO:0005515)
InterPro: Target SNARE coiled-coil domain (IPR000727)
Sec20 (IPR005606)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.15,1.97,12.26,2.84,20.36,10.37,14.61,15.00
Arabidopsis thaliana homolog: AT2G35190.1
Automatic updates:
Name: NM_001319728 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max novel plant SNARE 11-like (LOC100796579), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr11:36980694..36981171 (- strand)
Length: 478
Type: three_prime_UTR
Position: Chr11:36981172..36981261 (- strand)
Length: 90
Type: CDS
Position: Chr11:36981875..36981949 (- strand)
Length: 75
Type: CDS
Position: Chr11:36982077..36982169 (- strand)
Length: 93
Type: CDS
Position: Chr11:36982258..36982314 (- strand)
Length: 57
Type: CDS
Position: Chr11:36983087..36983166 (- strand)
Length: 80
Type: CDS
Position: Chr11:36983438..36983526 (- strand)
Length: 89
Type: CDS
Position: Chr11:36983679..36983716 (- strand)
Length: 38
Type: CDS
Position: Chr11:36983835..36983928 (- strand)
Length: 94
Type: CDS
Position: Chr11:36984240..36984332 (- strand)
Length: 93
Type: CDS
Position: Chr11:36984418..36984494 (- strand)
Length: 77
Type: CDS
Position: Chr11:36984495..36984680 (- strand)
Length: 186
Type: five_prime_UTR

>Vigan.11G246600.01 class=Sequence position=Chr11:36980694..36984680 (- strand)
AGAAAACCCC AATAATTTTT GTTTGTTCCT TGAAAGTAAA AGGGACGAAC ATACACTGAA GATCCCGTCC CAACCGCACA
ACGCGCTGTT TGGGAGCAAC GCGAAATCTG ACCCGCATTC CTCGTTTCCT CTCACTCCTA AAGGCCTCAT CCAAACAGCC
CTCTCTGCCT CAGATCTCGC TGCGAGATGG ATCAGTTGTC GGCGATCAGC GAGGACCTGG CCGAGATCGA GGGGCAAATC
GCCGACAATT TCCGCGCCCT ATCGTCAGAA CCTCAACCTC CTCGCTTCCT TTCGTGTTCC GTTCCTGCAT TGTTTTCTCA
TATGTTGGTC TTGTGGTTGC TGTTGCAGAA ATGGATTTCA GAAGTTGGAG AAGATTAAGG ATTCGAATAG ACAGAGCAGG
CAGTTGGAAG AGCTCACGGA GAAAATGCGA GAATGTAAAC GGTATTTTTC ACATTCCACA TATGAATAAT TTCGATTATG
TCGTTTGCAC TTCGCTTATT CGAATTGCGT TTGTCTCACA TTGATGAGAG CTTTGTGCAA GAGAGCCTGT ATAATCTGTC
ACAACTTTCA GATCTGTGAT ACTGAAAAAT CATGAACAGA AACCTGTCTA TAGCGTGAGG TTTTAATTTG TTTTCCAAAG
TCTGATTGTG TGATTTTCCT GATAATCGTT TGGCATTGAA GCACATCTTG GATTTGAGAT TTTGCCGTGG CTGCCTCGTC
TAGTGTGTTT ACGGTTGGAT CTCATTTTTC AGGCTTATCA AGGAGTTCGA TAAAGAAGTC AAAGCTTTGG AGAATAACTT
CGACAGAGAA ACTAACAAAA TGTTGAATGA GAAAAAGCAG TCAATGGTTA GATGATTGTG GATTTTTTTT TCCGTTGACA
TTTTAATCGA TATGTTTTCG CATTTTAGTT TTATTGATTT CCATAACAAA TGTTACTTAC AAGCATCTTC TATTTTTGTT
GCAGATCAAA GAGTTAAACT CATATGTTGC TTTAAAAAAG AAGTAAGTTA AAACAAAGCA TAAGCTATCG ATTTATCCCG
TTTGGCAGAC ATATTTTTTT ATTGCTTCTG TAACTTCGAA ATATATTCTG CCATTAGTGG ATGTATTCCT TGATATCAAC
GACCAACTCT AGTGTGTGCT ATGTTGCAAT GCAGGTATGC TACAAATATT GAGCATAAAC GAATTGAACT CTTTGAGGGG
CCAAATGAAG GTTTTGCTGA AGAAAATGGC TTGCTAGCAT CCTGTAAGCA GACCGATACC TTTATGTTGT ACATGCGGGT
ATTTATTTTT CGTATCACAT TTTCTGCTTT CAAATCAATG AAAGCCTATA ATAATTTATT TTTCGTATCA CATTTCTGTC
ACTGAAAGGC ATTTGCATGT CTATAGTTTT GGTCAACTGC CTGGAAGTCT TAAAAGCCTT TGAAAAGAAA GGAAACTAAA
AACAAGCTGT TTAGCAAATA GAATCAAGAT CTATACTATT GTGCTTAACA TTGACCCTTT ATGATTTATT ACAGCAATGA
CTAACGAACA ACTAATGGAT CATGGGAATA GGATGATGGA TGAGACAGAT CAGGCCATTG AAAGGGGAAA GAAGGTAGGT
CTATTTTTTG GGTGTCACAT CTTTTAGAAT TTGCAGTGCA CAACGAATTT GTCTATAGTT TGCTATTATA TTTTTTCTAG
TCCAAGGAAC CCAGAGCGAA ATCACATTGG TTCCTCCAAG TGTTTCTTGT ATGTGGCAGT TTTGGAAATG CGGGGACCTT
AAGTTATCGT TACCGTCTTT CTGGTCTCTT ATTTTTCTGT CCTGCTATGA TCTAATTTGT TTCTTGTTGT TTAATTGGCA
CTTGCTTGCC ATTTTGCTTA TTTGCTACAT GTTCTTCCTC AATTAAATTA CATTGTAAAC TTTTATGCTC TTGAAGAACT
ACTGTCCCAA TCTTGCTTTT GTTCACTCCC ATTCTATCAT CACGTTTGCT AGAATTTTTC TGGCTCTCCA GGAAATGAAG
GTGTGTGTGA TGGAGGTTTG GGAGAAAGGA TATTTTTCAA TAGTAGTAGG CGTACAAAGG CATAGCTATA TAAGATAATT
GTACGGTTTT TGTATGACAT AGTATACACA TTTAGACCAG TGTAGCAATT AGAGAACTTA TCCATGTGCA TTGTTGAACT
TTATGTGGAA AAAGACTTGC ATTTTATGTG TAACTAACCT GAAAGGTCAC AATTGAACTC TCTATCCGCT GGAAGTTTGA
AGAGATGAGA AAGTTGTGGA ATCAAAAATT CTTGATGTTT AATTTGAATA TTCTTTACAT ATAGTTTTTG CTTTCCTCTT
TTGGGTAAAA GGGGAAGTTT GCTGATAGGA AGTTGATTGC TGATAGGTCG TTCAAGAAAC AATAAATGTT GGTACAGAGA
CTGCAGCAGC TCTTAAGGCT CAGGTATGAA TCTTATGCAT ACCCCAAAAT TAACGAAGAA AAAAAGACTT GAATTCGACA
TGGGTTTAAG TGTACACTCT TCTATGTATA GACGGAACAA ATGAGCAGAG TTGTCAATGA GCTGGATTCG ATCCATTTCT
CTTTAAAGAA AGCATCACAA TTGGTCAAGG AAATCGGTAG GCAGGTCAAT TTCTACAGAA TCCACATCAT TTCATTGCAA
TGTAGTTACT ATATATATAT ATATATATAT ATATATATAT ATATATATAT ATATGAATCA TTCATCTAAC ATATGGGTGC
TTTTATAATA GGTTGCTACT GACAAGTGTA TTATGATGCT ACTTTTCCTT ATTGTCATTG GAGTAATTGC TATCATTATA
GTAAAGGTAA GAGAATGACT TTTTAACCCA AGGTTTAATT CAGAACCGTT ATCGGGAATT TTTAACTATT ATTGTATTTC
TAGGTGAAGT TATTGGGCCG GGATTTTTTT TGTAGTTAAC GGTAAAAATT GCTTGACAAT GTGTAAGGAT ATGTATGTTG
CTTGTGGAAG CATATTATAT TTACTTATCG ATTAACCATG AAAAAGAACT TCCGTTTTCC AAGTCTTTCA CTGGATACAG
AATTTGATGG CCTTCATTAG TTTATGCATT TTTATGTGAT ATGCTAAGGT TCATCTTTTT ATGTTATTGA TCGATGCAGC
CATGTGACAA TTATCATAAA AAACACTTCC AAAATTTATT TGCAGTATGT TTGAAAGAGA TTGTTTTGGC ATTGGATTTA
AAACAAAAAT ATCATTGATT GGGTCCAGGG CAGTTGAAGG TGGTGAAAAA AGTTCTAAAA TTTAAATATA GTTACAAATG
TCACAATTTG GAATGCCATT TTTCTTTTTG GTAAAAAGTT TCATTCACAA CCTAATAGAA CTAGATTCCA GAAGTCACCT
TTTGTAAGTA TTTAATCTTA TGACTGCTCA AATTATTATG AATTCTTTCA AAATTTCAGC TTGTGCACCC GGAGAACAAG
GACATTCGCG ACATTCCAGG ACTGGCTCCT CCAGTTCAGA ACCGAAGACT GCTTTGGAGT CACAGTTGAA GAGTTAAAAT
GAACATGATG ATGACTGATA AGCTTACGAC AAATGCGTTG GGGACACTAA AATGATCATG TTTATGACCT CACCAAATTG
ATTTGATGGT TATGACATTG GATGAAGGTA TTACCAGAAA CGCAGTTGCC ATTAATTGAG TTTGTTATTA CATAATATTA
GAAGAGGGTT GGTTGGCCTG AGGCATAATA GAACGTGGGT CTAGGAATGC ACGCTGAACT TTTTCTTGAA CCGAACCATT
TTTACTACTA TACAGGTTCT GTCTATGGAA TCATAGGGAA AGCCAAACAA ATGGGCCCTT GAGATTCTTT GCTGGTTGTC
TTTCTGTCAA TCGTGTAATG TACGGTGCCA TTTACTGTAT ACCTTCACTT CTAAAAAACC TACCTAGTAT TATCAATTTA
TAATATAAGC ACTACTTTAT CATGTTTAAA TCTTGCAAGT CCTTTGTTTT GTTTTAATCG ATGTCCA

>Vigan.11G246600.01
AGAAAACCCC AATAATTTTT GTTTGTTCCT TGAAAGTAAA AGGGACGAAC ATACACTGAA GATCCCGTCC CAACCGCACA
ACGCGCTGTT TGGGAGCAAC GCGAAATCTG ACCCGCATTC CTCGTTTCCT CTCACTCCTA AAGGCCTCAT CCAAACAGCC
CTCTCTGCCT CAGATCTCGC TGCGAGATGG ATCAGTTGTC GGCGATCAGC GAGGACCTGG CCGAGATCGA GGGGCAAATC
GCCGACAATT TCCGCGCCCT ATCAAATGGA TTTCAGAAGT TGGAGAAGAT TAAGGATTCG AATAGACAGA GCAGGCAGTT
GGAAGAGCTC ACGGAGAAAA TGCGAGAATG TAAACGGCTT ATCAAGGAGT TCGATAAAGA AGTCAAAGCT TTGGAGAATA
ACTTCGACAG AGAAACTAAC AAAATGTTGA ATGAGAAAAA GCAGTCAATG ATCAAAGAGT TAAACTCATA TGTTGCTTTA
AAAAAGAAGT ATGCTACAAA TATTGAGCAT AAACGAATTG AACTCTTTGA GGGGCCAAAT GAAGGTTTTG CTGAAGAAAA
TGGCTTGCTA GCATCCTCAA TGACTAACGA ACAACTAATG GATCATGGGA ATAGGATGAT GGATGAGACA GATCAGGCCA
TTGAAAGGGG AAAGAAGGTC GTTCAAGAAA CAATAAATGT TGGTACAGAG ACTGCAGCAG CTCTTAAGGC TCAGACGGAA
CAAATGAGCA GAGTTGTCAA TGAGCTGGAT TCGATCCATT TCTCTTTAAA GAAAGCATCA CAATTGGTCA AGGAAATCGG
TAGGCAGGTT GCTACTGACA AGTGTATTAT GATGCTACTT TTCCTTATTG TCATTGGAGT AATTGCTATC ATTATAGTAA
AGCTTGTGCA CCCGGAGAAC AAGGACATTC GCGACATTCC AGGACTGGCT CCTCCAGTTC AGAACCGAAG ACTGCTTTGG
AGTCACAGTT GAAGAGTTAA AATGAACATG ATGATGACTG ATAAGCTTAC GACAAATGCG TTGGGGACAC TAAAATGATC
ATGTTTATGA CCTCACCAAA TTGATTTGAT GGTTATGACA TTGGATGAAG GTATTACCAG AAACGCAGTT GCCATTAATT
GAGTTTGTTA TTACATAATA TTAGAAGAGG GTTGGTTGGC CTGAGGCATA ATAGAACGTG GGTCTAGGAA TGCACGCTGA
ACTTTTTCTT GAACCGAACC ATTTTTACTA CTATACAGGT TCTGTCTATG GAATCATAGG GAAAGCCAAA CAAATGGGCC
CTTGAGATTC TTTGCTGGTT GTCTTTCTGT CAATCGTGTA ATGTACGGTG CCATTTACTG TATACCTTCA CTTCTAAAAA
ACCTACCTAG TATTATCAAT TTATAATATA AGCACTACTT TATCATGTTT AAATCTTGCA AGTCCTTTGT TTTGTTTTAA
TCGATGTCCA 

>Vigan.11G246600.01
ATGGATCAGT TGTCGGCGAT CAGCGAGGAC CTGGCCGAGA TCGAGGGGCA AATCGCCGAC AATTTCCGCG CCCTATCAAA
TGGATTTCAG AAGTTGGAGA AGATTAAGGA TTCGAATAGA CAGAGCAGGC AGTTGGAAGA GCTCACGGAG AAAATGCGAG
AATGTAAACG GCTTATCAAG GAGTTCGATA AAGAAGTCAA AGCTTTGGAG AATAACTTCG ACAGAGAAAC TAACAAAATG
TTGAATGAGA AAAAGCAGTC AATGATCAAA GAGTTAAACT CATATGTTGC TTTAAAAAAG AAGTATGCTA CAAATATTGA
GCATAAACGA ATTGAACTCT TTGAGGGGCC AAATGAAGGT TTTGCTGAAG AAAATGGCTT GCTAGCATCC TCAATGACTA
ACGAACAACT AATGGATCAT GGGAATAGGA TGATGGATGA GACAGATCAG GCCATTGAAA GGGGAAAGAA GGTCGTTCAA
GAAACAATAA ATGTTGGTAC AGAGACTGCA GCAGCTCTTA AGGCTCAGAC GGAACAAATG AGCAGAGTTG TCAATGAGCT
GGATTCGATC CATTTCTCTT TAAAGAAAGC ATCACAATTG GTCAAGGAAA TCGGTAGGCA GGTTGCTACT GACAAGTGTA
TTATGATGCT ACTTTTCCTT ATTGTCATTG GAGTAATTGC TATCATTATA GTAAAGCTTG TGCACCCGGA GAACAAGGAC
ATTCGCGACA TTCCAGGACT GGCTCCTCCA GTTCAGAACC GAAGACTGCT TTGGAGTCAC AGTTGA

>Vigan.11G246600.01
MDQLSAISED LAEIEGQIAD NFRALSNGFQ KLEKIKDSNR QSRQLEELTE KMRECKRLIK EFDKEVKALE NNFDRETNKM
LNEKKQSMIK ELNSYVALKK KYATNIEHKR IELFEGPNEG FAEENGLLAS SMTNEQLMDH GNRMMDETDQ AIERGKKVVQ
ETINVGTETA AALKAQTEQM SRVVNELDSI HFSLKKASQL VKEIGRQVAT DKCIMMLLFL IVIGVIAIII VKLVHPENKD
IRDIPGLAPP VQNRRLLWSH S*